LOCUS       NZ_CP058145             1240 bp    DNA     circular CON 03-APR-2024
DEFINITION  Klebsiella quasipneumoniae strain RHBSTW-00138 plasmid
            pRHBSTW-00138_15, complete sequence.
ACCESSION   NZ_CP058145
VERSION     NZ_CP058145.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15148509
            Assembly: GCF_013624775.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella quasipneumoniae
  ORGANISM  Klebsiella quasipneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1240)
  AUTHORS   AbuOun,M., Jones,H., Stubberfield,E., Gilson,D., Shaw,L.P.,
            Hubbard,A.T.M., Chau,K.K., Sebra,R., Peto,T.E.A., Crook,D.W.,
            Read,D.S., Gweon,H.S., Walker,A.S., Stoesser,N., Smith,R.P.,
            Anjum,M.F. and On Behalf Of The Rehab,Consortium.
  TITLE     A genomic epidemiological study shows that prevalence of
            antimicrobial resistance in Enterobacterales is associated with the
            livestock host, as well as antimicrobial usage
  JOURNAL   Microb Genom 7 (10) (2021)
   PUBMED   34609275
REFERENCE   2  (bases 1 to 1240)
  AUTHORS   Shaw,L.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUN-2020) Nuffield Department of Medicine, University
            of Oxford, John Radcliffe Hospital, Oxford OX3 9DU, United Kingdom
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.7
            Assembly Name                     :: WTP1 T1-00138
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 76.0293412188064x
            Sequencing Technology :: Hybrid: Illumina and PACBIO_SMRT
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013624775.1-RS_2024_04_03
            Annotation Date                   :: 04/03/2024 04:50:16
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,635
            CDSs (total)                      :: 5,511
            Genes (coding)                    :: 5,336
            CDSs (with protein)               :: 5,336
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 175
            CDSs (without protein)            :: 175
            Pseudo Genes (ambiguous residues) :: 0 of 175
            Pseudo Genes (frameshifted)       :: 53 of 175
            Pseudo Genes (incomplete)         :: 117 of 175
            Pseudo Genes (internal stop)      :: 27 of 175
            Pseudo Genes (multiple problems)  :: 19 of 175
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP058145.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1240
                     /organism="Klebsiella quasipneumoniae"
                     /mol_type="genomic DNA"
                     /strain="RHBSTW-00138"
                     /isolation_source="Wastewater influent sample"
                     /db_xref="taxon:1463165"
                     /plasmid="pRHBSTW-00138_15"
                     /geo_loc_name="United Kingdom"
                     /collection_date="2017"
     gene            join(872..1240,1..141)
                     /locus_tag="HV092_RS28030"
                     /old_locus_tag="HV092_28035"
     CDS             join(872..1240,1..141)
                     /locus_tag="HV092_RS28030"
                     /old_locus_tag="HV092_28035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016243913.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_052923824.1"
                     /translation="MIVASEHQTKLRQKEIQEIDRKASKEHEEAKKNSNFTQTYPKGWQ
                     RIRELVRDKQGAAAIGLYSFFAEHIDPTCGAVVCDQQFLANQMGVSTRTIRRWLDYLEE
                     KGALVRIPVAGKVCAYALDPHEVWKGYNTSKDYSAFVTKTLVNKDGEIKRRIMAMFSGE
                     ESGQEQ"
                     /name="helix-turn-helix domain-containing protein"
ORIGIN
        1 cctcatgaag tctggaaagg atataacaca tcaaaagact actcagcctt tgttaccaag
       61 acgttagtga acaaagatgg agaaataaaa cgccggataa tggctatgtt ttcaggagag
      121 gagagcggtc aagagcagta gcgaagcgac tcttgacggc tcggaacgac ccccaccctc
      181 gaaaaggggg atggttcgcc acagcgagcc atccccatga taagcagccc tttaagcagt
      241 aaatcccata aataaataaa acagcacatc acttttgtaa tgtgccgcat tcctttggga
      301 ctaaaaggac ttagccagga atgtaataca gaaaattaat cgacaaggag gtcatcatga
      361 tcacttcaac aatcatcaca atcattggct taattggaag cctcataacg atttaccgag
      421 agatatatcc taaggataag cactaattag ccagtataca ctccgctagc ggagtgactg
      481 gttcagggct tcgccccgaa acccctaaaa accgtcatgc atggtgatgg ctcactatgc
      541 gagccatcac cagataaaag gttaaatggg cattttgatc gtcaaggtca agccgctaac
      601 gcggtcgcct atggcgaacc ctgaccctca aaatgcccga ccggagggag ggagctacct
      661 tgaactttgg tgttgtctgt tggttttcat agaagagaat aggggaaaat agtaaattac
      721 tgattcttat agaattgttt ttttctgata ggacacagct ggtgtccgca cgtgaggaca
      781 cagctggtgt ccgcatgtgg ctggacatag gacgccgcaa gtcctatgat aggacaaaaa
      841 tgtcctatca aaaagacacc gagggataaa gatgatcgta gcttcagaac atcaaacaaa
      901 gctaagacag aaagaaatac aggaaatcga caggaaggca tctaaagagc acgaggaggc
      961 gaagaagaat agcaacttca cccagacata cccaaagggc tggcaacgca ttagagagct
     1021 tgtgagggac aaacaaggtg ctgccgctat aggtctttac tcatttttcg ctgaacacat
     1081 agatcctacc tgcggtgccg tggtctgcga ccagcaattt ttagctaatc aaatgggtgt
     1141 ttctactcgg acaattcgtc gttggttaga ttatttggag gagaagggtg ccttggtaag
     1201 aataccagtt gccggcaagg tctgtgctta cgctttagat
//
