LOCUS       NZ_CP058142             1943 bp    DNA     circular CON 03-APR-2024
DEFINITION  Klebsiella quasipneumoniae strain RHBSTW-00138 plasmid
            pRHBSTW-00138_12, complete sequence.
ACCESSION   NZ_CP058142
VERSION     NZ_CP058142.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15148509
            Assembly: GCF_013624775.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella quasipneumoniae
  ORGANISM  Klebsiella quasipneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1943)
  AUTHORS   AbuOun,M., Jones,H., Stubberfield,E., Gilson,D., Shaw,L.P.,
            Hubbard,A.T.M., Chau,K.K., Sebra,R., Peto,T.E.A., Crook,D.W.,
            Read,D.S., Gweon,H.S., Walker,A.S., Stoesser,N., Smith,R.P.,
            Anjum,M.F. and On Behalf Of The Rehab,Consortium.
  TITLE     A genomic epidemiological study shows that prevalence of
            antimicrobial resistance in Enterobacterales is associated with the
            livestock host, as well as antimicrobial usage
  JOURNAL   Microb Genom 7 (10) (2021)
   PUBMED   34609275
REFERENCE   2  (bases 1 to 1943)
  AUTHORS   Shaw,L.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUN-2020) Nuffield Department of Medicine, University
            of Oxford, John Radcliffe Hospital, Oxford OX3 9DU, United Kingdom
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.7
            Assembly Name                     :: WTP1 T1-00138
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 76.0293412188064x
            Sequencing Technology :: Hybrid: Illumina and PACBIO_SMRT
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013624775.1-RS_2024_04_03
            Annotation Date                   :: 04/03/2024 04:50:16
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,635
            CDSs (total)                      :: 5,511
            Genes (coding)                    :: 5,336
            CDSs (with protein)               :: 5,336
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 175
            CDSs (without protein)            :: 175
            Pseudo Genes (ambiguous residues) :: 0 of 175
            Pseudo Genes (frameshifted)       :: 53 of 175
            Pseudo Genes (incomplete)         :: 117 of 175
            Pseudo Genes (internal stop)      :: 27 of 175
            Pseudo Genes (multiple problems)  :: 19 of 175
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP058142.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1943
                     /organism="Klebsiella quasipneumoniae"
                     /mol_type="genomic DNA"
                     /strain="RHBSTW-00138"
                     /isolation_source="Wastewater influent sample"
                     /db_xref="taxon:1463165"
                     /plasmid="pRHBSTW-00138_12"
                     /geo_loc_name="United Kingdom"
                     /collection_date="2017"
     gene            13..249
                     /locus_tag="HV092_RS28005"
                     /old_locus_tag="HV092_28010"
     CDS             13..249
                     /locus_tag="HV092_RS28005"
                     /old_locus_tag="HV092_28010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016947370.1"
                     /translation="MKRLINLTPAEKRFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IESQRQAERQRSAREEERQQAEFTWSRPRAPRR"
                     /name="hypothetical protein"
     gene            complement(459..569)
                     /locus_tag="HV092_RS28410"
                     /old_locus_tag="HV092_28015"
     CDS             complement(459..569)
                     /locus_tag="HV092_RS28410"
                     /old_locus_tag="HV092_28015"
                     /inference="COORDINATES: protein motif:HMM:NF033853.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small membrane protein"
                     /protein_id="WP_181352638.1"
                     /translation="MDWILLTIAIALLVVAVYSGISYFREKKTISRTFRR"
                     /name="small membrane protein"
     Typing          1549..1718
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="87.135"
                     /coverage="98.0"
                     /evalue="2.08e-47"
     Typing          complement(1078..1624)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.909"
                     /coverage="90.0"
                     /evalue="0.0"
ORIGIN
        1 ccggagatcg ccatgaaacg actgataaac ctgacgcccg ccgagaaaag atttctcgac
       61 gatgctgttg ccgccgctga gagagcgtca ggcaagaagc tgaatcagcc caacaggcac
      121 attgtcctta acagggctcg tgcacagatc gaatcgcagc gccaggcaga acggcagcga
      181 tctgcgcgtg aggaggagcg gcagcaggcg gaatttacct ggtcgcgtcc gcgggcgccg
      241 cgtcgctgat tgccactttc gtcggtttcg tggggagttc agggcgaaac agcgtggtat
      301 tcactacggt gcatagtcat tcacccccgt aaaactcacc agagcgattc cgggcggttt
      361 tctgggggta agacgtgctc ttttgtggct gaaggcgcag aaacgccctg aggccgtttt
      421 cgcggtgcgc gtaagaaggg attatggtaa atagggcgct atcgcctaaa tgtacgactg
      481 attgtttttt tttctctgaa gtatgagatt cctgagtaga cagctacaac aagtagagca
      541 atggcgatag taagtaaaat ccagtccata aatgcctgat taatttaata aaaacagcct
      601 gttatgattt cataaagata atatcatctt tttttagcat gatactgtcg ttacttattg
      661 tggtgagatg aaacataacc gctgtttttg tatgtgtttg ttaaggcggc taagattatt
      721 cctaaccact gattttgtac atatcatcaa aaaaataaaa aaactaatgc cctgtggtgg
      781 gtatgtaaca aatcacgggg agcgggtcaa cgccaaaact ttgaatgatc gggtggcagg
      841 ctaaatgaaa tcttgagatt cattcagtct cgtcgtaatc tcttgctctg aaaacgaaaa
      901 aaccacctgg ggaggtggtt tttcgaaggt taagtcagtt ggggaactgc ttaaccaggt
      961 aactggcttc agcagagcgc agataccaaa tactgtcctt ccagtgtagc cgtagttagg
     1021 ccaccacttc aagaactctg tagcatcacc tacattaact cgctctgcta atcctgttac
     1081 cagtggctgc tgccagtggc gctttggcgt gtctttccgg gttggactca agacgatagt
     1141 taccggataa ggcgcagcag tcggactgaa cggggggttc gtgcatacag tccagcttgg
     1201 agcgaactgc cttcccggaa ctgagtgtca ggcgtggaat gagataaacg cggccataac
     1261 agcggaatga caccggtaaa ccgaaaggca ggaacaggag agcgcacgag ggagctacca
     1321 gggggaaacg cctgggatct ttatagtcct gtcgggtttc gccgccactg atttgagcgt
     1381 cagattttgt gatgcttgtc aggggggcgg agcctatgga aaaacggctt cgccgcggcc
     1441 tcatcgcttc cctgttaagt ttcttcctgg tatcttcctg gaaatttccg ccccgcccgt
     1501 aagccggcac cgctcgccgc agccgaacga ccgagcgcag cgagtcagtg agcgaggaag
     1561 cggaatatct tctgtatcgc atattctgct tacgctctgc tgcagcattt ttcttctgcc
     1621 gcataaggcg ctttcctgat tatcgcactc atgccaacat actaagccag tatacactcc
     1681 gctagcgcta cgtgactggt ccggcgctgc gcccggaacc cgcaaattca gaaactgaaa
     1741 gcgggacaag atgtgttttt ggagtaccgc catcacgatg ccggcaccaa aacgatatct
     1801 cagggctgcg ccccgatacc ccgccaacgc ttcacggcac cggattaaaa tccgttcccg
     1861 ttcaccgttt ctcagggctg ttcccggctg caggttcttc atgaggttcg ccgtgtctgg
     1921 cagactgtgc agagttattc tga
//
