LOCUS       NZ_CP056391             2173 bp    DNA     circular CON 17-MAY-2024
DEFINITION  Klebsiella pneumoniae strain RHBSTW-00610 plasmid pRHBSTW-00610_7,
            complete sequence.
ACCESSION   NZ_CP056391
VERSION     NZ_CP056391.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15148664
            Assembly: GCF_013735155.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2173)
  AUTHORS   AbuOun,M., Jones,H., Stubberfield,E., Gilson,D., Shaw,L.P.,
            Hubbard,A.T.M., Chau,K.K., Sebra,R., Peto,T.E.A., Crook,D.W.,
            Read,D.S., Gweon,H.S., Walker,A.S., Stoesser,N., Smith,R.P.,
            Anjum,M.F. and On Behalf Of The Rehab,Consortium.
  TITLE     A genomic epidemiological study shows that prevalence of
            antimicrobial resistance in Enterobacterales is associated with the
            livestock host, as well as antimicrobial usage
  JOURNAL   Microb Genom 7 (10) (2021)
   PUBMED   34609275
REFERENCE   2  (bases 1 to 2173)
  AUTHORS   Shaw,L.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUN-2020) Nuffield Department of Medicine, University
            of Oxford, John Radcliffe Hospital, Oxford OX3 9DU, United Kingdom
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.7
            Assembly Name                     :: WTP3 T2-00610
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 72.9533752167854x
            Sequencing Technology :: Hybrid: Illumina and OXFORD_NANOPORE
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013735155.1-RS_2024_05_17
            Annotation Date                   :: 05/17/2024 03:20:16
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,516
            CDSs (total)                      :: 5,390
            Genes (coding)                    :: 5,246
            CDSs (with protein)               :: 5,246
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 144
            CDSs (without protein)            :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 60 of 144
            Pseudo Genes (incomplete)         :: 80 of 144
            Pseudo Genes (internal stop)      :: 29 of 144
            Pseudo Genes (multiple problems)  :: 22 of 144
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP056391.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2173
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="RHBSTW-00610"
                     /isolation_source="Freshwater sample from downstream of
                     wastewater treatment plant"
                     /db_xref="taxon:573"
                     /plasmid="pRHBSTW-00610_7"
                     /geo_loc_name="United Kingdom"
                     /collection_date="2017"
     gene            445..732
                     /locus_tag="HV247_RS27355"
                     /old_locus_tag="HV247_27360"
     CDS             445..732
                     /locus_tag="HV247_RS27355"
                     /old_locus_tag="HV247_27360"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_086611227.1"
                     /translation="MVFASVGMLGCHGCLIDGVIATDLPVGALIIGGSGNTVRNFDFKR
                     VNTAVKAVGSSSLFLENGLHEEPIKKANGPTLIATLVKQYLYGGNNNANV"
                     /name="hypothetical protein"
     gene            719..946
                     /locus_tag="HV247_RS27360"
                     /old_locus_tag="HV247_27365"
     CDS             719..946
                     /locus_tag="HV247_RS27360"
                     /old_locus_tag="HV247_27365"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_086611229.1"
                     /translation="MPMFDLDGCNDANIKGNKTSSEELLKAKQSDNLTAIDNEAGLPKK
                     KDEILGLKPGVYGFSIDLKALYRRIFKKRK"
                     /name="hypothetical protein"
     gene            complement(1536..1940)
                     /locus_tag="HV247_RS27365"
                     /old_locus_tag="HV247_27370"
     CDS             complement(1536..1940)
                     /locus_tag="HV247_RS27365"
                     /old_locus_tag="HV247_27370"
                     /inference="COORDINATES: protein motif:HMM:NF020265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1778 domain-containing protein"
                     /protein_id="WP_086611226.1"
                     /translation="MTEKTAILSLRITPELKRKLEACADDEHKTLTEFVRKTLAHSQEE
                     SVMHSAKEKLAELQTDVSKAEEQISNFQSQHTKLMDQLVNAQNRLVSEMENRLKVLRRN
                     RLLDIVLMTMFCIAGSVLGGLITELMRVKG"
                     /name="DUF1778 domain-containing protein"
ORIGIN
        1 atatagtttg tattaccgcc actctgtgcc gcactccaaa catcctgtca gaatcggtat
       61 tcagtgaagg tcaggacaag atgtgggttt gctataccgc cacccaatat cttgccgtca
      121 gggctgcgcc ccgacacccc gccaacgcct cacgagccgg caataaattg cctgcccgtt
      181 caccgtttcg taattgatga tcgtgcctac ttttagtctg ttggttctct gttttggatg
      241 aaatcatgcg tcagtcgttc gggtgcataa cgattcaccc cctcagaatt catctgagcc
      301 attctgagag gttttcaggg ggtaagacgg agtgttttac ggcttaagcc tcagaatcgc
      361 tctgaggccg tctgagcagt gcgcgtaaga gggcgttatg gtaaatttat aagtgggatg
      421 ttttcttctg ggtgggaggg ggatatggtt tttgcttctg ttggtatgct gggctgtcat
      481 gggtgtctta tcgatggtgt tattgctact gacttaccgg ttggtgcttt gatcattggt
      541 ggtagtggga atacagttag aaactttgat ttcaaaaggg ttaatacggc tgttaaggct
      601 gtaggtagct ctagtctctt tttggagaac ggcctccatg aagagcctat caagaaggct
      661 aatggtccga cgctaattgc cactcttgtg aagcagtatt tatacggagg taataataat
      721 gccaatgttt gatctcgatg gttgcaatga tgcaaatatt aaaggcaata agacctcgtc
      781 agaagagctt ctgaaagcta agcaatcaga taaccttact gctattgata atgaggctgg
      841 gcttcctaag aagaaagatg aaattctggg cttgaaacca ggagtttatg gcttctctat
      901 tgatttaaaa gcgctttacc gtcgaatttt taaaaaaaga aaatagatat ctaatgcccc
      961 cgtggtgggt atatgaaaac cacggggagc gtagcgacca tcgtcaagct ctcttcttgt
     1021 gtgtctcacc ctgcaaaagg tttgattgtg tgggagcagc gtttgacgtt tgaatcacac
     1081 tgttccgctt gatgctgcct tagatgctcg ttttatcagg tgccagttat cgtactgcga
     1141 gacggggtag agcttaactc tttcgcggtt aagttacgta tccaccaatt gcctgtttat
     1201 cctgccggag tccggggcgt agacctgagc gtctaaggtg cagatatgat tttaatgtcg
     1261 ttgaatggta ttaagctggt agtgacatcg ctagccagcc ctgctaggat ttagattctc
     1321 acgtctgatc cgtagcaggt atctgcgaag aattagagta cctaagccct gtgattctgt
     1381 cacggggctt ttgtacattt agcgcccgag aatcaaaaac atcccttcag aacgtcgcca
     1441 acgctcgccg cagaagcaaa cccgtttgcg ccgaggaagc ggaattttat agcttccccg
     1501 ccattttcta cttacgcacg gtattggtat tttttctatc ccttgaccct catcagctcc
     1561 gtgattaagc cgcccagcac cgaccctgct atgcagaaca tcgtcatcag tacgatatcg
     1621 agcagcctgt tgcgtcgtaa aacctttagc cggttttcca tctcagagac cagcctattc
     1681 tgcgcgttaa ccagctggtc catcagtttg gtatgttgtg actgaaaatt actgatctgt
     1741 tcttcggctt tgcttacgtc cgtttgcagt tcagcgagct tttcttttgc cgaatgcata
     1801 acactttcct cctggctgtg tgccagtgtc ttgcgtacaa attcggtcag tgtcttatgc
     1861 tcatcatcag cacaggcttc gagtttccgt ttcagttcag gggtgatacg caggctcagg
     1921 atggcggttt tctctgtcat ggatgtttac gctgtaattc ataccgtata cgccttatac
     1981 catcagcgtt tcgtccgtaa aggggctgat tttctgtaaa cacgggaaat atgtccgtta
     2041 aaaagtgagg cacgttaccg atgtttacac gggggaaatc ccccgttaca aatcgtccgc
     2101 gccaaagggt gcccctttga aacccaaaac cggtaatgcc tgacagatcc ggaggactaa
     2161 attacgggac agg
//
