LOCUS       NZ_CP056228             1443 bp    DNA     circular CON 17-MAY-2024
DEFINITION  Klebsiella pneumoniae strain RHBSTW-00973 plasmid pRHBSTW-00973_7,
            complete sequence.
ACCESSION   NZ_CP056228
VERSION     NZ_CP056228.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15148755
            Assembly: GCF_013724605.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1443)
  AUTHORS   AbuOun,M., Jones,H., Stubberfield,E., Gilson,D., Shaw,L.P.,
            Hubbard,A.T.M., Chau,K.K., Sebra,R., Peto,T.E.A., Crook,D.W.,
            Read,D.S., Gweon,H.S., Walker,A.S., Stoesser,N., Smith,R.P.,
            Anjum,M.F. and On Behalf Of The Rehab,Consortium.
  TITLE     A genomic epidemiological study shows that prevalence of
            antimicrobial resistance in Enterobacterales is associated with the
            livestock host, as well as antimicrobial usage
  JOURNAL   Microb Genom 7 (10) (2021)
   PUBMED   34609275
REFERENCE   2  (bases 1 to 1443)
  AUTHORS   Shaw,L.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUN-2020) Nuffield Department of Medicine, University
            of Oxford, John Radcliffe Hospital, Oxford OX3 9DU, United Kingdom
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.7
            Assembly Name                     :: WTP3 T3-00973
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 44.9275864910522x
            Sequencing Technology :: Hybrid: Illumina and OXFORD_NANOPORE
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013724605.1-RS_2024_05_17
            Annotation Date                   :: 05/17/2024 03:04:16
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,752
            CDSs (total)                      :: 5,628
            Genes (coding)                    :: 5,483
            CDSs (with protein)               :: 5,483
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 145
            CDSs (without protein)            :: 145
            Pseudo Genes (ambiguous residues) :: 0 of 145
            Pseudo Genes (frameshifted)       :: 68 of 145
            Pseudo Genes (incomplete)         :: 81 of 145
            Pseudo Genes (internal stop)      :: 33 of 145
            Pseudo Genes (multiple problems)  :: 31 of 145
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP056228.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1443
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="RHBSTW-00973"
                     /isolation_source="Wastewater influent sample"
                     /db_xref="taxon:573"
                     /plasmid="pRHBSTW-00973_7"
                     /geo_loc_name="United Kingdom"
                     /collection_date="2017"
     gene            complement(join(1371..1443,1..422))
                     /locus_tag="HV338_RS28630"
                     /old_locus_tag="HV338_28635"
     CDS             complement(join(1371..1443,1..422))
                     /locus_tag="HV338_RS28630"
                     /old_locus_tag="HV338_28635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000469298.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_016240432.1"
                     /translation="MFVNPELHGKKRQEQLDENVRKATREHEEAKKNSRFTQVSPKGWE
                     RVRELLTDKQGVAALRLYSFLAEHIDPSCGAVVADQQFLADKMGVNRSTIIRWLNYLES
                     KNALVRIPVAGKVCAYALDPHEVWKGYNTSKDYSAFVTKTLVNNDGDIKRRIMSMFSSN
                     E"
                     /name="helix-turn-helix domain-containing protein"
ORIGIN
        1 acaaatgctg agtagtcttt tgatgtgtta tatcccttcc acacttcatg aggatctaat
       61 gcatatgcgc agacctttcc tgcaacgggg atcctaacca atgcgttttt tgactctaag
      121 taatttagcc accttattat tgtcgatcta ttcacaccca ttttatcggc aagaaattgc
      181 tgatctgcaa caactgctcc acatgaagga tcgatatgtt ctgctaaaaa tgagtagagt
      241 cgtagcgccg ctaccccttg tttgtcagtg aggagctctc taacacgttc ccagccttta
      301 ggtgatacct gggtgaacct ggagttcttt ttcgcttcct catgctctct agtggctttt
      361 ctgacgttct catcaagttg ctcttgccgt ttttttccgt gtaactctgg attcacaaac
      421 atgacatttt cgcctttggt tttgatggta cattgctgtt ccaaaaatgc tacatcttgt
      481 tgcatttgcg cgtcaaggtg ttccgtattg ttgcacgcag ggtgcaacaa cgttgttgca
      541 ccctgcgtgc aacaggtcaa aggtatgttt cccagcaaaa acaataagtt attatttttg
      601 ctatatctaa tctttaaaga cctaacagca aacatcaaaa gttaggtacc tcccgccttt
      661 aatcgggcat ttttgagggt caaggttcac gtaagtgacc gcggagcggc tcgaccttga
      721 tgctcaaaaa tgcctaacaa gcttcgcgga ggtggttgtg atcacgcagt gagcgcaacc
      781 acctgccaga cgcatttgat tttagccatt gcgggttccg ggcgcagcgc cggaccagtc
      841 acgtagcgct agcggagtgt atactggctt aggtgtgtaa gcagaaaatg tggggtgttg
      901 gttatcttgc gcctccttcg ttcattcgct cactacgttc ggtcatgaac tgcggcaggc
      961 actcttggct cttaacctta atggtttcga taccaatcgc tgatactgtc aacagcgagc
     1021 tactcgagtt tatttacgtc gacagcgtat tgttagatga tcgtgtgcag atgttttgtt
     1081 agattattta tttgtaatta taaaaaaaca gccattcggc tgttttcttt actgctatcg
     1141 ccatgtaata aaaatacgca tattattatc acaacagcct tatttatttt tattttcata
     1201 aaggctccat tttattatta tgccgaaatc gacgataaat atataatata tttttaatat
     1261 aaaaagcaaa tatattttgc gatattatca aaatatattt gctgatattt tttattttag
     1321 tgttttacat taaaaaacaa taacttatat atttaagtat cttgctttgg ctattcattg
     1381 gaagaaaaca tcgacatgat tcttctctta atgtcgccat cattgttaac taaagtcttt
     1441 gtc
//
