LOCUS       NZ_CP056154             1698 bp    DNA     circular CON 31-MAR-2024
DEFINITION  Klebsiella grimontii strain RHBSTW-00853 plasmid pRHBSTW-00853_5,
            complete sequence.
ACCESSION   NZ_CP056154
VERSION     NZ_CP056154.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15148716
            Assembly: GCF_013730235.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella grimontii
  ORGANISM  Klebsiella grimontii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1698)
  AUTHORS   AbuOun,M., Jones,H., Stubberfield,E., Gilson,D., Shaw,L.P.,
            Hubbard,A.T.M., Chau,K.K., Sebra,R., Peto,T.E.A., Crook,D.W.,
            Read,D.S., Gweon,H.S., Walker,A.S., Stoesser,N., Smith,R.P.,
            Anjum,M.F. and On Behalf Of The Rehab,Consortium.
  TITLE     A genomic epidemiological study shows that prevalence of
            antimicrobial resistance in Enterobacterales is associated with the
            livestock host, as well as antimicrobial usage
  JOURNAL   Microb Genom 7 (10) (2021)
   PUBMED   34609275
REFERENCE   2  (bases 1 to 1698)
  AUTHORS   Shaw,L.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUN-2020) Nuffield Department of Medicine, University
            of Oxford, John Radcliffe Hospital, Oxford OX3 9DU, United Kingdom
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.7
            Assembly Name                     :: WTP5 T3-00853
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 134.023672755191x
            Sequencing Technology :: Hybrid: Illumina and OXFORD_NANOPORE
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013730235.1-RS_2024_03_31
            Annotation Date                   :: 03/31/2024 05:13:40
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,069
            CDSs (total)                      :: 5,950
            Genes (coding)                    :: 5,780
            CDSs (with protein)               :: 5,780
            Genes (RNA)                       :: 119
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 170
            CDSs (without protein)            :: 170
            Pseudo Genes (ambiguous residues) :: 0 of 170
            Pseudo Genes (frameshifted)       :: 56 of 170
            Pseudo Genes (incomplete)         :: 125 of 170
            Pseudo Genes (internal stop)      :: 34 of 170
            Pseudo Genes (multiple problems)  :: 38 of 170
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP056154.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1698
                     /organism="Klebsiella grimontii"
                     /mol_type="genomic DNA"
                     /strain="RHBSTW-00853"
                     /isolation_source="Wastewater influent sample"
                     /db_xref="taxon:2058152"
                     /plasmid="pRHBSTW-00853_5"
                     /geo_loc_name="United Kingdom"
                     /collection_date="2017"
     gene            complement(join(1587..1698,1..80))
                     /locus_tag="HV299_RS30160"
                     /old_locus_tag="HV299_30175"
     CDS             complement(join(1587..1698,1..80))
                     /locus_tag="HV299_RS30160"
                     /old_locus_tag="HV299_30175"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_045892409.1"
                     /translation="MLKKDDIILIKSYGNEKTKIFLRGVNEVLMIDASFEEVKFAINND
                     LQDLQGMQAVSAPLKIAT"
                     /name="hypothetical protein"
     gene            complement(1226..1384)
                     /locus_tag="HV299_RS30165"
                     /old_locus_tag="HV299_30180"
     CDS             complement(1226..1384)
                     /locus_tag="HV299_RS30165"
                     /old_locus_tag="HV299_30180"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_154232883.1"
                     /translation="MNALKATTNHPDNGERMRNLLRGREALPAQPENPFSARSGRGAMY
                     EWFRERI"
                     /name="hypothetical protein"
ORIGIN
        1 tcattcacac cccgtaaaaa tatttttgtt ttttcgttac catatgattt tattaggata
       61 atatcatctt tttttagcat gatactttcg ttacttattg ttttgagatg aagcatcgtc
      121 atggtttttt ttgcatgtgc ttgttaaggg gattgagatt attcctaact ccttgagttt
      181 gtacatacaa aaaaaacaaa aaaatcctaa tgcccccgtg gtgggtatat aaaaatcacg
      241 gggagcgcag cgaccttcgt ccagctcgtt tcttgtgtgt ctcaccctgc aaaaggtttg
      301 attgtgtggg cgctgtgctg acgtctgaga atcacacttt gccgcttact gctgtcttat
      361 tcgctcattt tatcaggtgc ttgttatcgt acagcgagac ggggtagagc ctaactcttt
      421 cgcggttaag ttacgttccc accaatttgc ctgtttatcc tgccggagtc cggggcgtag
      481 acctgagcgt ctaaggtgca gatatgattt taatgtcgtt gaatggtatt aagctggtag
      541 tgacatcgct agccagccct gctaggattt agattctcac gtctgatcct ggcaggtatc
      601 tgcgaagaat tagagtaccg aagccctgtg attctgtcac ggggcttttg tacatttaaa
      661 ggcccggaat caaaaacatc tccttcacat gaaattcagt aacgctcgcc gcagtactga
      721 ctagcggagt ctgtcagtgc gaggaagcgt catatctacc ttgctgagat aagcactgtc
      781 acacggagtc tgaacgtgaa caaacaacaa aagtcagtca tgaacatggc gaaacttata
      841 cgtggccagt aataccccgg tattactctt tatttctttc ctttcatgta attacagtgg
      901 attttaatac ccgggtatta ctcgtgaaaa cgaaatattc cttttttttc ttttaattca
      961 tgtagttgcg atgaaaatcg cggctgcgtt aggtgtatga ccatttaagg gttaaaaaat
     1021 catcattttt ggtagggcgc tctccgtagg ttaagggtta tttggctaaa aagcgtcctg
     1081 ttctttgatg gtcatgcaag catgaccatc tgagcaacca aaaactacag ataaactaca
     1141 aaaaacgttt tgcattagtg atggcagact acaaaaaaac tacaagaaaa ctacagataa
     1201 actaaaaagt aactacctga tcacctcaga tccgttccct gaaccattcg tacatcgccc
     1261 cccttcctga acgtgctgaa aacgggtttt ccggctgcgc cggcaacgcc tcacggccac
     1321 gcaataaatt gcgcatccgt tcaccgttat cggggtggtt cgtggtggct ttcagggcgt
     1381 tcatcggatt ttagccgcta aaatcccggc caggtatgtc cgtgcatagc catgcagtcg
     1441 cgccagaatc atcaggggcg ttttttctcg atatggtcac agaaaggtgt gtgtttcagg
     1501 ccggaggcct cagaaacgcc ctgagggcct ctcaggcggt gcgggcaacg gatgttatgg
     1561 taaatgttga gtgctcttac taaaaatcag gttgctattt ttagcggtgc gcttactgcc
     1621 tgcattccct gaagatcctg aaggtcatta ttgatagcaa actttacctc ttcaaagctc
     1681 gcgtcaatca ttagaacc
//
