LOCUS       NZ_CP055301             3305 bp    DNA     circular CON 05-JAN-2024
DEFINITION  Klebsiella pneumoniae strain KP55 plasmid pKP55_7, complete
            sequence.
ACCESSION   NZ_CP055301
VERSION     NZ_CP055301.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15234688
            Assembly: GCF_018336835.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3305)
  AUTHORS   Li,X.
  TITLE     Ceftazidime-avibactam resistance in carbapenem-resistant Klebsiella
            pneumoniae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3305)
  AUTHORS   Quan,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JUN-2020) Infectious Diseases, Sir Run Run Shaw
            Hospital, 3# East Qingchun Road, Hangzhou, Zhejiang 310016, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 12-JUN-2020
            Assembly Method                   :: Unicycler v. 0.4.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/05/2024 11:30:35
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,982
            CDSs (total)                      :: 5,860
            Genes (coding)                    :: 5,681
            CDSs (with protein)               :: 5,681
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 179
            CDSs (without protein)            :: 179
            Pseudo Genes (ambiguous residues) :: 0 of 179
            Pseudo Genes (frameshifted)       :: 68 of 179
            Pseudo Genes (incomplete)         :: 118 of 179
            Pseudo Genes (internal stop)      :: 25 of 179
            Pseudo Genes (multiple problems)  :: 32 of 179
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP055301.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3305
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="KP55"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pKP55_7"
                     /geo_loc_name="China: Hangzhou"
                     /lat_lon="30.3 N 120.2 E"
                     /collection_date="2020-04"
                     /collected_by="Xi Li"
     gene            join(3054..3305,1..684)
                     /locus_tag="HUW33_RS29690"
                     /old_locus_tag="HUW33_29685"
     CDS             join(3054..3305,1..684)
                     /locus_tag="HUW33_RS29690"
                     /old_locus_tag="HUW33_29685"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_033570823.1"
                     /translation="MATYHLSVKFGGKGKALAHASYITREDKFSQRQDLEHTEHGNMPE
                     WARDEPAHFWQAADAFERANGSTYREIEIALPRELNEAQRLALVRDFVKQETGDKHAWT
                     FAIHNPKASIDGGEQPHAHIMMSQRVNDGIERSPEQYFRRYNAKFPARGGARKDSGHNL
                     TPTEQKQALKALRERWERTHNAHMKRYGFEQGFIDSRSLKAQGIDRKPEQHLGFEAAGR
                     LDDSQRQDIKDSRTFSVVDVPEQAKHIDHSDRSWMNASGIEVNRKELVRSLTHDISQQY
                     GREMAARVTKQGNVEIERVKSLSRGFSISR"
                     /name="MobA/MobL family protein"
     gene            687..1217
                     /locus_tag="HUW33_RS29695"
                     /old_locus_tag="HUW33_29690"
     CDS             687..1217
                     /locus_tag="HUW33_RS29695"
                     /old_locus_tag="HUW33_29690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_033570822.1"
                     /translation="MASTEEKLLTLLLSAEHLKEAAKEQQKAVADSLAVARETLKGYRE
                     ISDSVAQQVRDEVRQEVQKMDIAGLIGERISADFQRLEKSVGNMKINADALDKEISIIR
                     SNIIAEYNTLRGYSWKWFAGVAVAFVVLIFATSWFVKTELQDNYNASAAVYQKVADLEK
                     LLTTELKPEKKKN"
                     /name="hypothetical protein"
     gene            complement(1484..1906)
                     /locus_tag="HUW33_RS29700"
                     /old_locus_tag="HUW33_29695"
     CDS             complement(1484..1906)
                     /locus_tag="HUW33_RS29700"
                     /old_locus_tag="HUW33_29695"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_033570825.1"
                     /translation="MKLKFIPIFLFIVTLQAAHSSGIGSTPPPQGKVIYTMNCTFVDDT
                     GKAIGKSQKYILRKGGDGREQMEITPQENAHVPPPIYIQKTSGAYTNGGFKTFYWNNTV
                     RMTVIRGDKTTVEIEFIDSPAISIAKATCDNPVYLP"
                     /name="hypothetical protein"
     gene            complement(2501..2887)
                     /locus_tag="HUW33_RS29705"
                     /old_locus_tag="HUW33_29700"
     CDS             complement(2501..2887)
                     /locus_tag="HUW33_RS29705"
                     /old_locus_tag="HUW33_29700"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_033570824.1"
                     /translation="MRISNVEWLKKRIAFIRKLGEKTARQRQIIDLLDDEASLSETDRR
                     LLHVLATAEKNALQERDAAQKKAVQARISGQKNRRERNHKLFLAAGLMIDAGLVDTKTG
                     ELNFDHEKLLTALKRVRYDLETSA"
                     /name="hypothetical protein"
     Typing          3055..3305
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="94.048"
                     /coverage="100.0"
                     /evalue="3.96e-46"
ORIGIN
        1 cggctggcgc ttgtccggga ttttgtgaag caggaaacgg gcgacaaaca tgcatggacg
       61 tttgcgatcc acaatccgaa agccagcatt gacggcggcg aacagccgca cgcccatatc
      121 atgatgagcc agcgcgtcaa tgacggtatt gagcgcagtc ccgaacagta tttcaggcgc
      181 tataacgcca aatttccggc gcgtggcggc gcgcgcaagg actcagggca taatttaacc
      241 cctacagaac aaaaacaggc actgaaagcc ctgcgggagc gctgggagcg tacgcacaac
      301 gcgcatatga aacgatatgg ctttgagcag ggttttattg atagccggtc actgaaagca
      361 cagggtatcg accggaaacc ggaacagcat ctcggttttg aagcagccgg acgactggac
      421 gacagccaga ggcaggatat taaagacagc cggacgtttt cagtcgtgga tgtgcctgaa
      481 caggcgaagc atatcgacca cagcgaccgt agctggatga atgccagcgg tatcgaggta
      541 aaccggaagg aactggtcag atctctgacg catgatatct cgcagcagta cgggcgggag
      601 atggctgcac gggtcacaaa acagggaaat gttgaaatag agcgcgtgaa atccctgtca
      661 cgcggatttt ccataagcag gtaactatgg cgagcaccga agaaaaactt ctcacgctcc
      721 tgctgtcggc ggagcatctg aaagaggccg caaaagagca gcagaaagcc gtggcggatt
      781 cgctggcggt ggcaagggaa accctgaaag gctaccggga aatatcggac agtgtggcgc
      841 agcaggttcg ggatgaagtc cggcaggaag tgcagaaaat ggatattgcg gggctgatcg
      901 gcgagcgtat cagcgctgat tttcagcgtc tggaaaaatc cgtcgggaac atgaaaatca
      961 atgcggacgc gctggacaag gaaatttcca ttatccgcag taacatcatc gcggagtaca
     1021 acacgctgcg gggttacagc tggaagtggt ttgctggggt tgcggttgcc tttgtcgtac
     1081 tgatatttgc cacaagctgg tttgtgaaaa cggaactaca ggacaattac aacgcgtctg
     1141 ctgccgtcta tcagaaagtg gcagaccttg aaaagctgct gacaacggaa ctgaaaccgg
     1201 aaaagaaaaa gaactgacgc gctgcgcttg tccaacgcct cacgttcgca caataaattg
     1261 cgcacccgtt caccgttttc agccgggttt ggggcgtctt ttgagacttc cggcctgaat
     1321 tcaggccgga agttctcgcc agtcagtcag gtgcatggtt atgcatgggg ctgaaagtca
     1381 cggtatgcga ttctgggcgg ttttcggtga gaaaacgggg gtttttatgg ctcagggcgt
     1441 aaaaccgccc tgagcgcgtc tgagcggtgc gcgtaatgac gcgttatggt aaataaacag
     1501 gattgtcgca tgtggctttc gctatcgaaa tcgcagggga atcaataaac tctatttcca
     1561 cagtggtttt atcgcccctg atcacggtca tccgtactgt attgttccag tagaaggttt
     1621 tgaacccacc attggtgtaa gcaccacttg ttttttgtat gtatatgggg ggggggacat
     1681 gtgcgttttc ttgtggagtt atctccattt gctcacgacc atcccccccc tttcgcagga
     1741 tgtatttttg cgacttacca atagccttac cggtatcatc gacaaaagtg caattcattg
     1801 tgtatatcac cttcccttga ggggggggcg tgctaccaat tccactggaa tgagcggctt
     1861 gtaacgtaac gataaataaa aaaataggta tgaattttag cttcacgtag tgtctccgtt
     1921 gcaaaaaaag cctaatgccc ccgtggtggg tatataaaaa tcacggggag cagagcgacc
     1981 ttcgtccagc tcgtttcttg tgtctctcac cctgcaaggg gcttgattgt gtgggtgaag
     2041 tgtcagacct tagcaatcac acttcgccgc ttaccgctgc cttgttcgct cattttatca
     2101 ggtgccagtt atcgtactgc gagacggggt agagcttaac tctttcgcgg ttaagttacg
     2161 tttccaccgt ttgcctgttt atcctgccgg agtccggggc gtagacctga gcgtctaagg
     2221 tgcagatatg agtttaatgt cgttgaatgg tattaagctg gtagtgacaa ggctagccag
     2281 ccctgctagg attggattgc tacgtctgat cctggcaggt atctgcgaag aattagagta
     2341 ccgaagccct gtgattctgt cacggggctt ttgtacatct ggagcaagaa aattcatgct
     2401 cctatccgaa aatccctacc gctcgccgca gccgaacgac cgagcgtagc gagtcagtga
     2461 gcgaggaagc ggcatttctc cgcccttgca gaatgcacgt tcacgccgat gtttccagat
     2521 cgtagcgtac ccgtttcagc gcagtcagta atttttcgtg gtcaaaattc aactcacccg
     2581 tttttgtatc aaccagtccc gcgtcaatca tcagaccagc cgccagaaat agtttgtgat
     2641 tgcgttccct gcggtttttc tgccctgaaa tccgcgcctg aaccgccttt ttctgtgcgg
     2701 catcccgttc ctgcaacgcg tttttttcag cggttgccag aacgtggagc agtcgtctgt
     2761 cagtttcact gagcgaagct tcatcatcca gcagatcgat aatctgccgt tgccgtgccg
     2821 ttttttctcc cagctttctg atgaaggcta tgcgcttttt aagccattcg acgttactga
     2881 tccgcatcgt ttaacttccc catcccgata tttccgacgg ggaaagtata taacttgcgg
     2941 ttagaagtcg catgacttat ctttactcat aattctttaa attagagtaa agcgcactta
     3001 tatgtttctc cctgcgggca gaaacagtgc gccctgccgg gggctgacac aacatggcaa
     3061 cgtatcatct cagtgtgaaa tttggcggca agggtaaagc ccttgctcat gccagttaca
     3121 tcacgcggga agataagttc agccagcgcc aggatctcga gcacaccgaa cacggcaaca
     3181 tgccggaatg ggcgagagat gaacccgccc atttctggca ggctgcggat gcgttcgaac
     3241 gtgccaacgg ttcaacgtac agggaaattg agatcgccct cccccgcgag ctgaatgaag
     3301 cgcag
//
