LOCUS       NZ_CP055193             2058 bp    DNA     circular CON 01-MAY-2024
DEFINITION  Klebsiella pneumoniae strain STEFF_14 plasmid unnamed7, complete
            sequence.
ACCESSION   NZ_CP055193
VERSION     NZ_CP055193.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13925530
            Assembly: GCF_022354285.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Che,Y., Xu,X., Yang,Y., Brinda,K., Hanage,W., Yang,C. and Zhang,T.
  TITLE     High-resolution genomic surveillance elucidates a multilayered
            hierarchical transfer of resistance between WWTP- and
            human/animal-associated bacteria
  JOURNAL   Microbiome 10 (1), 16 (2022)
   PUBMED   35078531
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Che,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JUN-2020) Civil Engineering, The University of Hong
            Kong, Pokfulam Road, Hong Kong 000000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: "Other" v. Unicycler
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200x
            Sequencing Technology :: Illumina; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022354285.1-RS_2024_05_01
            Annotation Date                   :: 05/01/2024 05:13:17
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,397
            CDSs (total)                      :: 5,273
            Genes (coding)                    :: 5,140
            CDSs (with protein)               :: 5,140
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 133
            CDSs (without protein)            :: 133
            Pseudo Genes (ambiguous residues) :: 0 of 133
            Pseudo Genes (frameshifted)       :: 58 of 133
            Pseudo Genes (incomplete)         :: 78 of 133
            Pseudo Genes (internal stop)      :: 20 of 133
            Pseudo Genes (multiple problems)  :: 20 of 133
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP055193.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="STEFF_14"
                     /isolation_source="Shatin WWTPs_14 WWTPs effluent"
                     /db_xref="taxon:573"
                     /plasmid="unnamed7"
                     /geo_loc_name="Hong Kong"
                     /lat_lon="22.4 N 114.2 E"
                     /collection_date="2018-12"
     gene            complement(join(1120..2058,1..51))
                     /locus_tag="HUZ42_RS26925"
                     /old_locus_tag="HUZ42_26890"
     CDS             complement(join(1120..2058,1..51))
                     /locus_tag="HUZ42_RS26925"
                     /old_locus_tag="HUZ42_26890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_040207214.1"
                     /translation="MQNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIEELGETLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPKWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVKKYRRSPTKDKTESD"
                     /name="protein rep"
     gene            complement(375..566)
                     /locus_tag="HUZ42_RS26930"
                     /old_locus_tag="HUZ42_26885"
     CDS             complement(375..566)
                     /locus_tag="HUZ42_RS26930"
                     /old_locus_tag="HUZ42_26885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_020324555.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     Typing          1203..1394
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.446"
                     /coverage="100.0"
                     /evalue="2.86e-91"
ORIGIN
        1 cgcatctgag ggggagtagt cagttaggtt ctggagttca ggattttgca tgcacaccgc
       61 cccatgctgg gcgatggctc atttgacgtg ttatcattgc catatcacct gtgttgtcgt
      121 gtccaaattc gaattcctac aggtggtcac acccccgaac tgttagcgca gttgcggggg
      181 tcgctttttt ctgcgaccac tcccgacaga atacttccaa aaccattttc aggcaaatca
      241 cactcaaacc cttgcggcac aagggctggc ggcgtttttt gacgccagag ttatccctta
      301 agtataaata caaggatcgc gcgcacgaga ctccggccat tttctgaccg atttccctcg
      361 cgcgcacgcg aggctcacaa ttcagggtcc gattctgaca tcaaatcatg agccaacctg
      421 gtcagtttcc gttgacggat atgccgggga tcattttctt tttcggcctt ccgctgcgca
      481 taggccgcca tgaacatttc ccgatccaca tgcgcaccca tctcatcgag aatctcaaac
      541 agccggttat ccagtctgac gatcatgcct accccctcaa aaaacgctta tcaggtggtt
      601 gcgctcactg cgtgatcaca accaccccct gtaagtattt tacgggtgct gtcgtcaatc
      661 actaaatcgg aacccactgg caagccagcg ggaccccgcg atttagcgtt tgacgatttc
      721 gggaacggcg aacgctgaca gattttaatc tggcggcgtg aggtgttggc agggtgtcgg
      781 ggcgcagccc tgacggatcg tttttggtac cggcatcgtg atggcggtac tccaaaaaca
      841 catcttgtcc gttatcagtt tttgtttttc gtgggcttgc cccaccgcgc gtttctcatc
      901 gccagatgag aaactactaa gcgcgccttc cggaaaatta ccggaagaaa aacccaggtt
      961 cggaatccga actcagtaat cgagtgacgt cactttgcgg cgttagccct atcctgcatc
     1021 ggagtaaaat caatcggaca agatgtgact ttggtacacc gccaccaagg tgacggatgc
     1081 ccaaagccct catggtcagg gcgcagcccc gacaccctgt tagtctgatt cggttttatc
     1141 tttcgtcggc gaacgccggt actttttgac ctcggtcttc cactcgaacg cgatgcggga
     1201 accgtcatca tcgccctcgg aaatatcatc cccgatcacc atgtcggcgt cggtttcctg
     1261 atcgagtttc agcacgtctt tgagtgcgcc gccggtcgcc acaaagcggc gcttgtgcgt
     1321 ctggcgggtc agttcgagga accatttagg atcggccacc atgtcggccg gcttcgtgga
     1381 atatttcagg gtttcggcca ctgcgccgcg caccagttcg gcggtcgcgc aggccagcga
     1441 ttcgccgtcc ttcggcttgc ggggtttcac tgcccggaca tcgacattcg gatcgtaact
     1501 gacccgcagg cactcacgcc acagctcaac ccagcgttca tgcctgacgt aactcttccc
     1561 gttaagcatg cccggcggaa ccatcatcag ggtgtggaag tgcgggtgtg cgctgccgtc
     1621 actgccgcgg gtgacttccg tggtgcgtat ccagccctga actggtcgga actctttacg
     1681 gtccttcagt cgctggaaag ccgtgttcat ccggctcagc gtctcgccca gctcctcgat
     1741 cgcgcagttg cgcacggtca gggtcagaaa catccagcgg gaatcggggt aatccgccac
     1801 gatacgcggc agggactggt agaaacgggc ttgccacatc agggagcgcc tccactggca
     1861 gacaggacag tgccggacac ggcagaaatg cgcctcacgc agcctcaggc gcgtttctcc
     1921 ggtttctttg agggtagacc acccaaacct cagtaaaccg ccacaggagg ccatacgcgc
     1981 cccgtagcgc tcatattcag ccgcaagcag gtaaatccct cccacgtcgt cagaaacgct
     2041 tctgtgagcg tcccacgg
//
