LOCUS       NZ_CP055192             2148 bp    DNA     circular CON 01-MAY-2024
DEFINITION  Klebsiella pneumoniae strain STEFF_14 plasmid unnamed6, complete
            sequence.
ACCESSION   NZ_CP055192
VERSION     NZ_CP055192.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13925530
            Assembly: GCF_022354285.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2148)
  AUTHORS   Che,Y., Xu,X., Yang,Y., Brinda,K., Hanage,W., Yang,C. and Zhang,T.
  TITLE     High-resolution genomic surveillance elucidates a multilayered
            hierarchical transfer of resistance between WWTP- and
            human/animal-associated bacteria
  JOURNAL   Microbiome 10 (1), 16 (2022)
   PUBMED   35078531
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2148)
  AUTHORS   Che,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JUN-2020) Civil Engineering, The University of Hong
            Kong, Pokfulam Road, Hong Kong 000000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: "Other" v. Unicycler
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200x
            Sequencing Technology :: Illumina; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022354285.1-RS_2024_05_01
            Annotation Date                   :: 05/01/2024 05:13:17
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,397
            CDSs (total)                      :: 5,273
            Genes (coding)                    :: 5,140
            CDSs (with protein)               :: 5,140
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 133
            CDSs (without protein)            :: 133
            Pseudo Genes (ambiguous residues) :: 0 of 133
            Pseudo Genes (frameshifted)       :: 58 of 133
            Pseudo Genes (incomplete)         :: 78 of 133
            Pseudo Genes (internal stop)      :: 20 of 133
            Pseudo Genes (multiple problems)  :: 20 of 133
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP055192.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2148
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="STEFF_14"
                     /isolation_source="Shatin WWTPs_14 WWTPs effluent"
                     /db_xref="taxon:573"
                     /plasmid="unnamed6"
                     /geo_loc_name="Hong Kong"
                     /lat_lon="22.4 N 114.2 E"
                     /collection_date="2018-12"
     gene            497..958
                     /locus_tag="HUZ42_RS26920"
                     /old_locus_tag="HUZ42_26880"
     CDS             497..958
                     /locus_tag="HUZ42_RS26920"
                     /old_locus_tag="HUZ42_26880"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_239592484.1"
                     /translation="MKKKLLAALILLTSTNAMALNQWVTDNKNGNPMVISEQGKFLITV
                     AYSSSNFENIYLYPLYEDNACKSNNYRPKQAKSAKFNGVLVQLADACMNGAHYFYPITD
                     QGINFVINQFFNSTSVYINQGDFSENISAQGFSRAMSTFRNMGNSTGGL"
                     /name="hypothetical protein"
     Typing          complement(1849..2064)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="88.073"
                     /coverage="100.0"
                     /evalue="3.41e-66"
ORIGIN
        1 gtacaaaagc cccgtgacag aatcacgggg cttgagtact ctaattcttg cagatacctg
       61 ccaggatcag acgtcacaat caaatcctag cagggctggc tagccttgtc actaccagct
      121 taataccatt caacgacatt aaacgcatat ctgcacctta gacgctcagg tctacgcccc
      181 ggactccggc aggataaaca ggcaaacggt ggaaacgtaa cttaaccgcg aaagagttaa
      241 gctctacccc gtctcgcagt acgataactg gcacctgata aaatgagcga acaaggcagc
      301 ggtaagcggt gaagtgtgat tggtaaggtc tgacacttca cccacacaat caagccattt
      361 gcacggcaag agaaacaaga aacgagctgg acgaaggtcg cgacgctccc cgtgattttt
      421 atatacccac cacgggggca ttaggtattt atttgctaaa atacactaag gtaaagacac
      481 tggacgttaa gaaaacatga agaaaaaact actcgcagct cttatcctcc taacctcaac
      541 caacgcaatg gctctcaacc aatgggttac ggataacaag aacggaaatc caatggtgat
      601 tagtgaacaa ggcaaattcc ttatcacagt agcttactca tcaagtaatt ttgagaacat
      661 atatttatac cctctgtatg aggataatgc ttgcaaatca aataattaca gaccaaaaca
      721 agctaaatct gcaaaattta acggtgtatt agttcaacta gctgatgcct gtatgaacgg
      781 agctcattac ttctacccca taacagacca aggtatcaac ttcgtcataa atcagttttt
      841 taactcaaca tcagtttaca taaaccaggg agatttcagc gaaaacatta gtgcgcaagg
      901 gttctcaaga gcaatgagca ctttcagaaa catggggaat agtactgggg ggctataagc
      961 atatttacca taacgcctca ttgcgtgcac cgcctgagag gctctgaggg cgtttctgtg
     1021 gcctgagcca taaaaagccc catcttctcc ccgaaaaccc gccagaaacg cgcaggctct
     1081 gtttttacgg catgcatgag tatgcgcaca agtgcatagc gcggaaattc acgccattca
     1141 gccggggtaa gtcctgtttc cgatgttctt cttacccgaa aacggtgaac ggggacgcaa
     1201 tttattgcgt ggccgtgaag cgttgccggc gcagccggaa aacccgtttt cagcacgttc
     1261 aggaaggggg gcgatgtacg aatggttcag ggaacggatc tgaggtaatc cggtagttac
     1321 tttgtagttt atgtgtagtt ttcttgtagt ttttttgtag tctgccatca ctaatgcaaa
     1381 acgttttttg tagtttatct gtagtttttg gttgctcaga tggacatgca agcatgacca
     1441 tcaaagaaca ggacactctt tagccaaata acccttaacc tacggagagc gccctaccaa
     1501 aaatgatgat tttttaacca ttaaatggtc atacacctaa cgcagccgcg attttcatcg
     1561 caactgcatg aattaaaaga aaaaaaagta atgtttcgtt ttcgcgagta atacccaggt
     1621 attaaaaacc cactgtaatt acatgaaaat aaagaaataa aaggtaatac cggcgtatta
     1681 ccacgtacgc gggcaagcga aaaagctata acgcttcccg gccgacaggc ggcccagaat
     1741 ccacaggggc atgcaggatc tcttcagtaa ccttcgccat taaatcaaaa aggtcatatt
     1801 cgccgggaag ctgcgtatca gtcgaacccc gttgttcatc atattcagat ggcatggggt
     1861 gatatccagt agcagagagg ttgttagcgg gtttcggggc gcagccctga accagtcacg
     1921 tagcgctagc ggagtgtata ctggcttaat atggtaattc gaagtggtaa ttcagggaaa
     1981 tgattcatgt ggcaggtgaa aaatgcggca tgtgggcgta agtgcaaaat gctggaaacg
     2041 atgaactgac gcctcctcgc tcactcggtc gctgcgctcc tgccgtgagg ctccggcggg
     2101 cgttgcgggg atataactga gggataatga aattttcagg ctcaagaa
//
