LOCUS       NZ_CP054276             1432 bp    DNA     circular CON 08-DEC-2023
DEFINITION  Raoultella ornithinolytica strain OHMEATKPC2_NDM5 plasmid pOSUMEAT6,
            complete sequence.
ACCESSION   NZ_CP054276
VERSION     NZ_CP054276.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15079954
            Assembly: GCF_021496525.1
KEYWORDS    RefSeq.
SOURCE      Raoultella ornithinolytica
  ORGANISM  Raoultella ornithinolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Raoultella.
REFERENCE   1  (bases 1 to 1432)
  AUTHORS   Wittum,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUN-2020) College of Veterinary Medicine, The Ohio
            State University, 1920 Coffey Rd., Columbus, OH 43210, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: NOV-2019
            Assembly Method                   :: Unicycler v. v0.4.8
            Assembly Name                     :: OSU_Rorn_KPC2NDM5
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology             :: Illumina MiSeq; PacBio RS
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/08/2023 12:16:34
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,519
            CDSs (total)                      :: 5,396
            Genes (coding)                    :: 5,259
            CDSs (with protein)               :: 5,259
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 137
            CDSs (without protein)            :: 137
            Pseudo Genes (ambiguous residues) :: 0 of 137
            Pseudo Genes (frameshifted)       :: 64 of 137
            Pseudo Genes (incomplete)         :: 89 of 137
            Pseudo Genes (internal stop)      :: 21 of 137
            Pseudo Genes (multiple problems)  :: 31 of 137
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP054276.1.
            Bacteria and source DNA available from Thomas Wittum, The Ohio
            State University College of Veterinary Medicine, 1920 Coffey Rd.,
            Columbus, OH 43210.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1432
                     /organism="Raoultella ornithinolytica"
                     /mol_type="genomic DNA"
                     /strain="OHMEATKPC2_NDM5"
                     /isolation_source="Retail Pork"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:54291"
                     /plasmid="pOSUMEAT6"
                     /geo_loc_name="USA: Ohio"
                     /collection_date="2018"
     gene            complement(join(848..1432,1..246))
                     /locus_tag="HRV96_RS27475"
                     /old_locus_tag="HRV96_27370"
     CDS             complement(join(848..1432,1..246))
                     /locus_tag="HRV96_RS27475"
                     /old_locus_tag="HRV96_27370"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_234972293.1"
                     /translation="MKNNHTRAKRGEVKGWSKTASRNNTKFLRSVYVPDLTGAAVAFTL
                     TIRDCPPTSDDWKKLREAFIVRLRRAGMVRLHWLTEWQKRGVPHLHGIAYFPAAYEAAT
                     VVWNWIAVAEKYGANIRSQHVVPITDMQGWFMYLAKHAGRSETHYQRNPEFVPAGWAKT
                     GRVWGYCGDWPIDEPMQLDASHAAFCALRRICRNWRLADARSANYGKVKDAEKKRRRRI
                     VSARTMLRCNKLGQSACHGVSEWIPLDVSLTAAYWCMSQHPMPEVDDSRHQIEI"
                     /name="hypothetical protein"
ORIGIN
        1 ccattcagta agccagtgaa gccgaaccat gccagcacga cgaaggcgaa caatgaaagc
       61 ctcgcggagt tttttccaat cgtcagacgt tggagggcaa tcacgaatag tcagcgtgaa
      121 cgccacagca gcgccagtga ggtcaggaac gtatacagag cgaaggaatt tagtgttatt
      181 gcgagaggca gtcttagacc agcccttaac ctctccacgc tttgcgcggg tatgattatt
      241 tttcatgggc ggaatcccag ccgtaagacc gttatgatat aatttcagcg tagccaaggt
      301 tagatccttt accgttcaga agtggttacc gagccccgga ctgttagcgc agttgcgggg
      361 ttttcttttg tccaaaggac agggaaaaga tacacccaaa gaagggaaaa aaacaggagt
      421 cgcgtcgagt tatgtaacaa ctaatcgaga cagccactca gaccgctttc agaaaaaccg
      481 atccagtgca tacacgcata cacgcataca tgagtaacag aggggtggca aaatgacaca
      541 aacgtgcagt attacataca ctgcacgccc gccaacgctg gaaacagtga acagggacaa
      601 atagagtcaa tccgaggtaa ccacgttcaa aacaggatgc cgcagcccct acggggcagg
      661 gcttccgcac ctaccccgca gcgccagcgt caacccgatt aaaaagcggc tttacagggc
      721 gatggctcac cttgtgaacc atcacctaat ccaagtgttg gggggggtgc gctgtacaaa
      781 cactaaatcg gaaccctaaa gggatccccc gatttagcat ttgacagttc ggcggcggtg
      841 aacgctgtca gatttcaatc tgatggcgtg aatcgtctac ctccggcatc gggtgctgag
      901 acatgcacca gtacgcagcc gtcagagaca catcgagcgg gatccactcc gagacaccat
      961 ggcaggcaga ttgccccagc ttgttacagc gcaacattgt ccgcgcggag acaatacggc
     1021 gacggcgttt cttttcggcg tctttcactt tgccataatt agctgaacgg gcatctgcaa
     1081 gacgccagtt acgacaaatg cgcctgagag cacagaacgc agcgtgagag gcgtcgagct
     1141 gcataggctc atcaatgggc caatcaccac agtaacccca tacacgaccc gttttagccc
     1201 atccagcagg gacaaactca gggttgcgct gatagtgagt ctcagaacgg ccagcatgct
     1261 tagccaggta cataaaccag ccctgcatat ccgtgatagg tacaacatgc tgagaacgga
     1321 tatttgcacc gtacttttct gcaacagcaa tccaattcca gaccacagtt gccgcctcat
     1381 aggcggcagg gaagtacgca atcccatgca aatgcggaac gcctcgtttc tg
//
