LOCUS       NZ_CP053779             5850 bp    DNA     linear   CON 09-JAN-2024
DEFINITION  Klebsiella pneumoniae strain BP3636 plasmid punnamed_1_VBP3636.
ACCESSION   NZ_CP053779
VERSION     NZ_CP053779.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14402341
            Assembly: GCF_011742415.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 5850)
  AUTHORS   Veeraraghavan,B., Shankar,C., Vasudevan,K. and Jacob,J.
  TITLE     Klebsiella pneumoniae VBP3636
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5850)
  AUTHORS   Veeraraghavan,B., Shankar,C., Vasudevan,K. and Jacob,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAY-2020) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
REFERENCE   3  (bases 1 to 5850)
  AUTHORS   Veeraraghavan,B., Shankar,C., Vasudevan,K. and Jacob,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAR-2020) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2020
            Assembly Method                   :: Unicycler v. 4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 106.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/09/2024 04:03:51
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,683
            CDSs (total)                      :: 5,561
            Genes (coding)                    :: 5,366
            CDSs (with protein)               :: 5,366
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 195
            CDSs (without protein)            :: 195
            Pseudo Genes (ambiguous residues) :: 0 of 195
            Pseudo Genes (frameshifted)       :: 94 of 195
            Pseudo Genes (incomplete)         :: 99 of 195
            Pseudo Genes (internal stop)      :: 35 of 195
            Pseudo Genes (multiple problems)  :: 30 of 195
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP053779.1.
            Bacteria and source DNA available from Department of Clinical
            Microbiology, Christian Medical College, Vellore, India.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..5850
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="BP3636"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="punnamed_1_VBP3636"
                     /geo_loc_name="India"
                     /lat_lon="12.9246 N 79.1348 E"
                     /collection_date="2019"
                     /collected_by="Dept of Microbiology, CMC Vellore"
     gene            <1..293
                     /locus_tag="HBJ33_RS28285"
     CDS             <1..293
                     /locus_tag="HBJ33_RS28285"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_218673681.1"
                     /translation="RMARAGEIRAAMMCAKPCRGARFQRGTRTKNSLSIADGRGAEHPI
                     KGVLYGKILEVWRKDFEQSSSSEPTLSKRLTERIHEARESYLGALKSSGRK"
                     /name="hypothetical protein"
     gene            290..421
                     /locus_tag="HBJ33_RS28700"
     CDS             290..421
                     /locus_tag="HBJ33_RS28700"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_267314057.1"
                     /translation="MSAAIAEHSQKMGWLLLKTWIWMLVSIVPVLERNRQDPLVSGN"
                     /name="hypothetical protein"
     gene            complement(946..1083)
                     /locus_tag="HBJ33_RS28220"
                     /old_locus_tag="HBJ33_028775"
     CDS             complement(946..1083)
                     /locus_tag="HBJ33_RS28220"
                     /old_locus_tag="HBJ33_028775"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_179108545.1"
                     /translation="MSDSDFKNSPEYDDWIESGGRDEDYSYYYENGIEELNDTLPIKGK
                     "
                     /name="hypothetical protein"
     gene            1806..2606
                     /gene="blaOXA"
                     /locus_tag="HBJ33_RS28225"
                     /old_locus_tag="HBJ33_028780"
                     /pseudo=""
     CDS             1806..2606
                     /gene="blaOXA"
                     /locus_tag="HBJ33_RS28225"
                     /old_locus_tag="HBJ33_028780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011071128.1"
                     /GO_function="GO:0008800 - beta-lactamase activity
                     [Evidence IEA]"
                     /GO_process="GO:0030655 - beta-lactam antibiotic catabolic
                     process [Evidence IEA]"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="class D beta-lactamase"
                     /name="blaOXA"
     Typing          4201..4473
                     /name="ColKP3"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="91.259"
                     /coverage="99.0"
                     /evalue="1.54e-100"
ORIGIN
        1 tacgcatggc ccgggcaggg gagatcagag ccgcgatgat gtgcgcaaag ccttgcaggg
       61 gtgcgaggtt tcagcgtggt acgcgaacca aaaacagcct gagcattgcc gacggacggg
      121 gggcggaaca tccgattaaa ggggtgctgt atggcaagat tttggaagta tggcgaaagg
      181 acttcgagca gagctcaagc agcgaaccaa cgctatcgaa gcgtctgacc gaaagaattc
      241 acgaggcacg agaaagctat ctcggggcgt tgaaatcaag cgggagaaaa tgagcgccgc
      301 tattgccgag cacagccaga aaatgggctg gctgttgctc aaaacgtgga tctggatgct
      361 ggtcagcatc gtccctgttc ttgagcgcaa caggcaggat cctctggtat cagggaattg
      421 atagcgggcg gcaagccact ctcaagcctt ggcagagaag ggcggcaagc taaagctgac
      481 cagtgcgggg aagaaattgg agcacctttg cgttgcagat ctccgacccc aatccaaccg
      541 tttggggaag gatacctgtg gatcgtgccg aagggtacta aatgacggga ttggagcaga
      601 attgctctgc gcgttcgagg ctttgcagag cgcatacgag agcagcacaa ggcatggcag
      661 gaagctacgc gaacttggcg agcatgtacg agagcgcaaa caagaggccg gatcagcagg
      721 gcagcagcag agcgattgac gaggcaggtg aacggcttaa cgcagcaagt ggacggcaga
      781 gcaagcagct ggagggcttg accgggctag tcagcaagtt gcaaaaagaa agggaacaca
      841 ggctcctgaa ggcactggat cgaggctggg agcgtggaga cagatcgcgg gctttgagcg
      901 ttgacggaac aaaacggccg tcagttataa aaaaggaaag tgctatcact ttccttttat
      961 cggcagggta tcgttgagtt cttctatgcc attttcatag tagtaactgt aatcttcatc
     1021 tctaccacca gattcaatcc agtcatcata ctcagggcta tttttgaaat ctgaatcaga
     1081 catgctaact ccttgttatt agttggcttc tatggaagct agcgcaccgt gaagttatga
     1141 tcaacgatgt agtccacatc attgtcgaaa tgtgcgttca gctagtcttg atgttttctg
     1201 ctttatttct agcggcgatt ctaacgtcgt ctgcccatgc agcagacttt tttctgttct
     1261 cgttgttctt cggttgaaga ctcgctgttg agaacttttg ttgctcgttt gtttgaccac
     1321 cgaatcaaac ctgttgttgc tgcaaaatga gctaggttaa caactcccct tacctaacaa
     1381 cttggcacta gcgattgcgg tttctttagc cccaaaaagc atcagacacc tcctcaagcg
     1441 ctttagatag gttaaaaaat cccatactcc cctaagaata tcatcaataa aattgagtgt
     1501 tgctctgtgg ataacttgca gagtttatta agtatcattg cagcaaaaga tgaaatcaat
     1561 gatttatcaa aaatgattga aaggtggttg taaataatgt tacaatgtgt ggaagcagtc
     1621 taaattcttc gtgaaatagt gattttgaag ctaataaaaa aacacacgtg gaatttaggt
     1681 aatagttaaa gcttgtgcct gattgttgcc acaattggtc agcagtttgc taggaatgag
     1741 agggcagaag aatgataaac agcacttaat ttgtatggat atattgcatt aagcaagggg
     1801 acgttatgcg tgtattagcc ttatcggctg tgtttttggt ggcatcgatt atcggaatgc
     1861 cagcggtagc aaaggaatgg caagaaaaca aaagttggaa tgctcacttt actgaacata
     1921 aatcacaggg cgtagttgtg ctctggaatg agaataagca gcaaggattt accaataatc
     1981 ttaaacgggc gaaccaagca ttttacccgc atctaccttt aaaattccca atagcttgat
     2041 cgccctcgat ttgggcgtgg ttaggatgaa caccaagtct ttaagtgggg atggacagac
     2101 gcgtgatatc gccgcttgga atcgtgacca tgacttaatt accgcgatga agtactcagt
     2161 tgtgcctgtt tatcaagaat ttgcccgcca aattggtgag gcacgtatga gtaaaaatgc
     2221 tgcacgcctt cgattatggc aatgaggata tctcgggcaa tgtagacagt ttttggctcg
     2281 atggtggtat tcgcatttcg gctacccagc aaatcgcttt tttttacgca agctgtatca
     2341 caacaagctg cacgtttctg agcgtagtca gcgcatcgtg aaacaagcca tgctgaccga
     2401 agccaatggc gactatatta ttcggctaaa acgggatact cgactagtat cgaacctaag
     2461 attggctggt gggttggttg ggttgaactt gatgtgataa tgtggttttt gcgatgaata
     2521 tggatatgcc cattatcgga tggtttaggg ctgcgctcac aagccatcaa aaagaagtgc
     2581 tcaaacagga gaaaattatt ccctagaagt ggttagcgcg tatttgtgtg aaatagccgt
     2641 catataagct gtaaagatat atggacaaaa tgctgatgct cgatgcgctt gtagttaatg
     2701 gctcatactt aatcggtcag gcctaatcga cttaagctcc gcgttaactt tcagcctgag
     2761 cattagcatc attattctaa acgtaaaaag cctagctaat ttgctaggct ttttgttatc
     2821 tcaatggcca tggtcactca acatgggggt gtgaataaag gagtggcgat gtcagtaaag
     2881 gtgaatgccg ctgcgataaa agtgccctag cccatcaagg attgtaggct ttcttggctg
     2941 ctaaagcgtt tgacgaaaaa gtccaagaag gcgctgatat tggttctcca tcattttcat
     3001 ctaccggttt tactataggt caacagaagc cgtcctcttg ccggcgcttg ggacgcagac
     3061 gatggcatca aatgccctcg ctcaaattcg tttctacaga ggcgctttgg accgcattcg
     3121 ctttgctttc atggggcatc tgtcaatgtc gtgacatgaa tcctccgata taggttgatt
     3181 tttttgatct cttcaacact tggtgttgtc cgaccagaga gacttatatg gatcagtatt
     3241 cttgcaccga caatggtgcc actcaatccc aaggatcgac ctagttagag gcgtagatca
     3301 agcaattcaa aacagcgcag aagcagaagg aggtggaaat atgttcgggg tgaaaggtta
     3361 catgcaacta acgttgctct ctagggatgt gcctgctgta acgtattgtc cagagacaac
     3421 cccgttatcg ctttgcatct tggcggagct gcgaaaacgg gggccgtgac gaatcacaag
     3481 agaagtccta tcattacgga tcatgccaac aaccccacgc cgccaataag cgcggtggtg
     3541 cttgagtagt gcgcacagct tgagctgttt cgggagcgcc tgccccggaa acctactatt
     3601 ccgacgagct tacaacgggc ctacggattg cggatgttgc ccgcgccctt tgcgcgttac
     3661 atccagccga acgggccaac gcaccgccac tggatcgttt tgacgtagac catgcagccg
     3721 ctacgttatc ttggagatga cgtagaggct ccagccccta acattaccgt cacgaacaag
     3781 gccaacggcc acgcgcatct gatctacgga ctggatacgc cgatccgcac tgccccggat
     3841 ggaaatgcag cctctgcggt atgccgccgc catcgggcgc actcccggga gaaattaggg
     3901 gcggatatgg gctactcggg ctgatcttgc aaaacccctg cgcgagcact ggctggtgca
     3961 ggtgtgaaca tccggaactc tacgatttag cacgtatcga ttacctcgat ctgagctcct
     4021 acaatggccc cgcaaatcgc ttcctgagtg cgagcttggg caaaagctgt accctgtttc
     4081 gaagaaaacg cgcctgggcc tataaagcga tccggcaggg ctggcggaat tacgaagaat
     4141 ggttggcctt gtattgaccg ggcatcagga tataacgccc agttcgagca gccgctttac
     4201 aaacagaagt cagcacacgg caagtccatt gccaaatgga cgcaccagca ctaagccccg
     4261 cagggctcag aaggcaggcc cggaggtgcg aagggcggca aggtatccaa gggaggggaa
     4321 ggcctgagca atagcggtaa ggggaccaag tccaatctgt accggaggtt ctgcggctta
     4381 aggctcaggg tacaccaacc gcgatatagc ggacgatctt caaatctccc cagtacgggt
     4441 gaaggcgttt acctaaagcg tgatcgtccg tgatcgaaac aagccttatc agataatagc
     4501 cccctttagg tttcctgcgc tcttgtcttt tagccttaaa aatcctttta agcgcggatc
     4561 tttggcgagg tggacagcac cgcctgtccg tccatcgccc cccctgtttt tcgggggtgt
     4621 gggcggcgcg gttatccacg gagccgctct ttcccttgat ctttgctcta gggctttggt
     4681 atcacccatg gtttgaactc aatgtgcact agcaaaggct gcacagaggc ctctgcctgc
     4741 ttcaggtctc agggcctctg tggccttgtt caggtgcact acgcccccca gagcccccct
     4801 gtggcccccg ctcgatccgc cccttgggga cggtctgcgc ggtaactggc tctggaatgg
     4861 acgaggcccc tatgtcaaca acacaatgaa agattcgaga aggaaggcag tcaatggcgg
     4921 tgttctagtt tccaactaga ggagtataac cgatgagtta aattctactt gaaagattat
     4981 atcaatggaa aaatttccac cgatgaggtg ttagctatgg taagtggcga acccacaaca
     5041 acggaatacg actacgaaat cacccccact cggtcttggc gggagcttag atcgtttgct
     5101 ggaggcttga agaggtcggc aggggtgttt tccttgccgg agcactgcga ttttcgggat
     5161 gaaaaaggcg ctccagacgc tactcgatag cctctatgag gacgccttag cggagcctct
     5221 gcatggctgg ccagccgtta aagcgcctcc gctctatcaa atccaggtct cagatacgga
     5281 gcttgagcgc ctgcggagct ctgccccaag gccgctggcg gagtggatgc gggagcaatg
     5341 tctcggtggt acgcaacccc agcgccgaac gccggcgcct accgtgagat ccggcgctct
     5401 tgcggcagtt ggccggaatg ggcaacaacc tgaacagatc gcccggcgcg ttaattccga
     5461 ggagtggggc cgttggatcg gctacgcatc tggcggagct gtccgctata ggccgcagag
     5521 ctggagaact gcaccgcaaa tcatcaaatt ccataaccgt ggggtaggcc ggggctccgg
     5581 gcctgttggc tacttgttgg gccgtgacgg gaaccgggaa ggcaacgctc gacccagggc
     5641 aaccctgcgg tgattgaagc cctgattgat tccagtccct acgccaaaaa aatacacctc
     5701 tggcgttctg tcgtttgccg aggctgattt gcagggggcg accaaggaca agccttgatg
     5761 agcgactttg aaaaaggcgc tcctgcccgg actggagggt gaccagtacg ctgttttgtg
     5821 ggtagagcac accgcgacaa gggcggctgg
//
