LOCUS       NZ_CP053770             1702 bp    DNA     circular CON 09-JAN-2024
DEFINITION  Klebsiella pneumoniae strain BA10835 plasmid punnamed_VBA10835,
            complete sequence.
ACCESSION   NZ_CP053770
VERSION     NZ_CP053770.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14402356
            Assembly: GCF_011742585.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1702)
  AUTHORS   Veeraraghavan,B., Shankar,C., Vasudevan,K. and Jacob,J.
  TITLE     Klebsiella pneumoniae VBA10835
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1702)
  AUTHORS   Veeraraghavan,B., Shankar,C., Vasudevan,K. and Jacob,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAY-2020) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2020
            Assembly Method                   :: Unicycler v. 4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 146.0x
            Sequencing Technology :: Oxford Nanopore MiniION; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/09/2024 04:30:37
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,847
            CDSs (total)                      :: 5,724
            Genes (coding)                    :: 5,538
            CDSs (with protein)               :: 5,538
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 186
            CDSs (without protein)            :: 186
            Pseudo Genes (ambiguous residues) :: 0 of 186
            Pseudo Genes (frameshifted)       :: 85 of 186
            Pseudo Genes (incomplete)         :: 112 of 186
            Pseudo Genes (internal stop)      :: 27 of 186
            Pseudo Genes (multiple problems)  :: 33 of 186
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP053770.1.
            Bacteria and source DNA available from Department of Clinical
            Microbiology, Christian Medical College, Vellore, India.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1702
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="BA10835"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="punnamed_VBA10835"
                     /geo_loc_name="India"
                     /lat_lon="12.9246 N 79.1348 E"
                     /collection_date="2019"
                     /collected_by="Dept of Microbiology, CMC Vellore"
     gene            122..1417
                     /locus_tag="HBJ44_RS29060"
                     /old_locus_tag="HBJ44_029650"
     CDS             122..1417
                     /locus_tag="HBJ44_RS29060"
                     /old_locus_tag="HBJ44_029650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611665.1"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /GO_process="GO:0006313 - DNA transposition [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISL3-like element ISEfa11 family transposase"
                     /protein_id="WP_002297218.1"
                     /translation="MNDSIKKMLRITEKDLMITEVSYETLQKKKTLVVDAVLSPTPRAC
                     RSCGSTVVDGNGKAIIVKNGKKETIVRFEQYNHMPLVMRLKKQRYTCKNCRTHWTAQSY
                     FVQPRHSIANHVRYKIASLLTEKVSLSFIAKSCQVSLTTVIRTLKEFKSYLPKQSKKIL
                     PRVLMVDEFRSHASIEDKMSFICADGETGKLIDVLPTRKLPRLTSYFLGCTNPEEVEFL
                     VTDMNAAYFQLTKRVLPNAKVVIDRFHIVKHMNQAFNELRIREMNELRKAGQKSQAEKL
                     KKNWRFLLKNRANINHYEYKTWKSFRAPKYPFLTEAMMIDRLLEFSPPLKEAYPFFHEL
                     VEAFRDKDPDLFFSLLAELPETLDDSFREKLQNLLTYEEGITNAMIYPYSNGKIEAKNT
                     HIKTMKRVSYGFKSFENMRIRIFLINQLINVR"
                     /name="ISL3-like element ISEfa11 family transposase"
ORIGIN
        1 gggactgatg aatcagaatt gattcttcag ccccattttc attttaggta ttaaaaaaca
       61 tatcgttctc tagtatgatt aaatcaccac aaaataaaca actgagagga cgatacgcta
      121 tatgaatgat tctatcaaaa aaatgctgag aataacagag aaagatttga tgattacaga
      181 ggtctcttac gagacccttc agaagaaaaa gacgttggtc gtcgatgctg ttctctcgcc
      241 tactcctcgt gcttgtagaa gttgtggttc tactgtggta gatggaaacg ggaaagcaat
      301 tatagtgaaa aatggaaaaa aggaaacgat tgtccgtttt gaacaataca atcatatgcc
      361 tttggttatg cgcctaaaaa agcaacgcta tacctgtaaa aactgtcgca cccattggac
      421 ggctcaaagt tattttgtcc aacccagaca ttcaatcgca aatcatgtta gatataaaat
      481 tgcttcttta ctgactgaaa aagtatcttt atcttttatt gcgaaaagct gtcaggtatc
      541 tttgaccacc gttattcgta cattgaaaga gtttaaaagc tatttaccaa agcaatctaa
      601 gaagatcctc cccagagtat tgatggttga cgaatttcgt tcgcatgctt ccatagaaga
      661 taagatgagc tttatttgcg cggatggcga aacaggaaaa ttaatagatg ttttgcctac
      721 gcgtaaatta cctcgattaa caagctattt cttaggttgt accaatccag aagaagtaga
      781 attcttggtg acagacatga acgccgccta cttccagctc accaaacgtg ttctgccaaa
      841 tgcgaaagtc gtgattgatc ggtttcatat tgtcaaacac atgaatcaag cgttcaatga
      901 gttgcgtatc cgtgaaatga atgaacttcg taaagccgga cagaaaagcc aggcagaaaa
      961 actgaaaaag aactggcgct ttttgctaaa aaatcgtgca aacatcaacc attatgaata
     1021 caaaacatgg aaaagtttcc gagcaccaaa atacccattt cttactgaag caatgatgat
     1081 tgatcgattg cttgagtttt ctccgcccct aaaggaggcg tatccctttt ttcatgaatt
     1141 agttgaagcc tttcgagaca aagaccctga cttatttttc tccttattgg cagaacttcc
     1201 cgaaacgtta gatgacagct ttcgggaaaa gcttcaaaac cttctgacct atgaagaagg
     1261 catcaccaac gcaatgatct atccttattc caatggaaaa atagaagcga agaataccca
     1321 cataaagaca atgaaacgag tatcctacgg atttaaatca tttgagaaca tgagaattag
     1381 aatctttttg atcaatcaat taatcaatgt aagataacaa aaaatctgag ccagaatgtg
     1441 gttcattctg actcagattt gattttgcac aactcatcag tccttattga caaagagcca
     1501 tttaacattg tcaatcaatg actaatttta caaaataaat attatccaag aagaccactt
     1561 agatattgac ctccataaat caaggccata ctatataaga aaatcgacag tggtttagca
     1621 atcaaaatga ttagtgtata tcgtttcact gacatgtttg tcaatccagc catcaaacat
     1681 aacgcatcgt caggagcaac tg
//
