LOCUS       NZ_CP053476             2353 bp    DNA     circular CON 17-JUL-2023
DEFINITION  Staphylococcus warneri strain WB224 plasmid pWB224_6, complete
            sequence.
ACCESSION   NZ_CP053476
VERSION     NZ_CP053476.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10970963
            Assembly: GCF_013137955.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus warneri
  ORGANISM  Staphylococcus warneri
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2353)
  AUTHORS   Li,Z., Dong,L., Zhao,C. and Wang,X.
  TITLE     Complete genome sequence of Staphylococcus warneri WB224, a strain
            with high-salted tolerant and acid-producing properties
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2353)
  AUTHORS   Li,Z., Dong,L., Zhao,C. and Wang,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAY-2020) Traditional Food Research, Institute of
            Agro-Products Processing Science and Technology of Saas, Jingjusi
            Road 20#, Chengdu, Sichuan 610066, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 22-JUL-2019
            Assembly Method                   :: Unicycler v. v0.4.8-beta
            Assembly Name                     :: WB224_Unicycler_v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 500.0x
            Sequencing Technology             :: PacBio Sequel; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/17/2023 03:32:55
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,509
            CDSs (total)                      :: 2,428
            Genes (coding)                    :: 2,389
            CDSs (with protein)               :: 2,389
            Genes (RNA)                       :: 81
            rRNAs                             :: 6, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 13 of 39
            Pseudo Genes (incomplete)         :: 20 of 39
            Pseudo Genes (internal stop)      :: 11 of 39
            Pseudo Genes (multiple problems)  :: 4 of 39
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP053476.1.
            Bacteria and source DNA available from Zhihua Li.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2353
                     /organism="Staphylococcus warneri"
                     /mol_type="genomic DNA"
                     /strain="WB224"
                     /isolation_source="Doubanjiang"
                     /db_xref="taxon:1292"
                     /plasmid="pWB224_6"
                     /geo_loc_name="China:Chengdu"
                     /collection_date="2016-08-25"
     gene            join(1628..2353,1..279)
                     /locus_tag="EYQ96_RS00470"
                     /old_locus_tag="EYQ96_00475"
     CDS             join(1628..2353,1..279)
                     /locus_tag="EYQ96_RS00470"
                     /old_locus_tag="EYQ96_00475"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_020368559.1"
                     /translation="MQYNTTRYVDENQDNETLKDMTKSGKQRPWREKKIDNVSYADILE
                     ILKIKKAFNVKQCGNVLEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQKVI
                     EEVVKEKPKARWLFLTLSARNAIDGEHLEQSLKHMSKAFNKLKMYTKVKKNLIGFLRST
                     EVTVNKNDGSYNQHMHVLLCVENSYFKNKANYITQEEWVTLWQKALQVNYRPVANIKAI
                     KPNQKGDKDIRAAIKETSKYSVKSSDFLTDDDEKNQEIVNDLEKGLYRKRMLSYGGLLK
                     QKHKILNLDDAEDGNLINTSDEDKTTDEEEKAHSITAIWNFEKQNYYLKDLKR"
                     /name="protein rep"
     gene            complement(925..1410)
                     /gene="lnu(A)"
                     /locus_tag="EYQ96_RS00475"
                     /old_locus_tag="EYQ96_00480"
     ARG             complement(929..1410)
                     /name="lnu(A)"
                     /gene="lnu(A)"
                     /gene_name="lincosamide nucleotidyltransferase Lnu(A)"
                     /tool="amrfinderplus"
                     /drug_class="LINCOSAMIDE"
                     /identity="100.0"
                     /coverage="100.0"
     ARG             complement(926..1410)
                     /name="lnuA"
                     /gene="lnuA"
                     /gene_name="lincosamide nucleotidyltransferase (LNU)"
                     /tool="rgi"
                     /drug_class="lincosamide antibiotic"
                     /identity="99.38"
                     /coverage="100.0"
     Typing          92..279
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="97.884"
                     /coverage="100.0"
                     /evalue="2.17e-87"
     Typing          1629..2353
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.174"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tcggttaagt catctgattt tttaactgat gatgatgaaa aaaatcaaga aattgtaaat
       61 gatttagaaa aaggtttata tcgaaaacgt atgttgagtt atggtggttt gcttaaacaa
      121 aaacataaaa ttttaaattt agatgatgcc gaagatggca atttaattaa tacaagtgac
      181 gaagataaaa caacagacga agaagaaaaa gcacattcaa ttactgcaat ttggaatttt
      241 gaaaaacaaa attattactt aaaagatttg aaacgttagc taaaaagcta gcgttttttt
      301 atgttttttg cccctgcggg aactatagga ttaaccagca tggttaccca gtttttacgc
      361 gaaaaataat tttgtgcgta aatgggcagt gtctgaattt ttttgccagt acatgccaaa
      421 tttttaattt gcatgtaact gggcagtgtc taaaaaatag tcactggttt tgctcaaatt
      481 tttgtttgtg gaattagaat atatttattt ggctcatatt tgcgttttaa aagcttgtgt
      541 aggtttttag gtataaaact atatgattta cccttaaatc tttaaaatgc ccccttagaa
      601 ttcaaaataa aggtatttaa aatttggtat ctttgaaaat ttaaaaataa aaaatgctat
      661 tacaaattag tgctggtgac actgaatgtt gtaatagcat ttatgcaaat agtcgataag
      721 ctatttaatc tatttttcta agatatatta tagcaagaac acgcatttat gccgagaaaa
      781 tttattgatg ttgagaagaa cccttaacta aacttgcaga cgaatgtcgg catagcgtga
      841 gctattaagc cgaccattcg acaagttttg ggattgttaa gggttccgag gctcaacgtc
      901 aataaagcaa ttggaataaa gcaattatgt tattgatttt aaatttttta tatcaaaatg
      961 gtctgtttct gttaaatcat aaccagaatg aaaaagaagt tgagcttctt ttgaaataca
     1021 tggtattttt cgatctttgt aattagtttc tgaaaaccag tcattttgga aaacataatt
     1081 accaccttct gggtttgctt gggtaattga tccatcatca tttagattta taggatgaat
     1141 atctaaatac ccatattctt catgcttaag ttccatacgt gaaggcatcc aatcaacttc
     1201 tattttgtat cctatatctt ctaatttttg tataactttt tgagtgtgtt gagcgtcaaa
     1261 atctatatct atatctctgt gttctctttg ttgttttcca gttaatacat ctacccccca
     1321 gccaccatct aaccaataag ttactttcat gtgttcaaat aaatctaaaa tataaaataa
     1381 ttctttttct gttacattat tatttttcat tttatccctc ctaacttggg aatttgaaac
     1441 gagttgaaaa cgagtttctt cttgtcttga tactatatag aaataactca aagatataaa
     1501 aagtcatttg aatgttgata taacagtatt tttggttgtt tttgttgttg aaagaaaatt
     1561 tgacatgaaa aaaccccagt tatatgatta aggtgtcgaa tcaaaatcaa aactggaggc
     1621 tttttatatg caatataata ctactagata tgtagacgaa aatcaagata atgaaacatt
     1681 aaaagatatg acgaaaagtg ggaaacaacg cccatggaga gagaagaaaa ttgataatgt
     1741 aagttatgca gatatactag aaattttaaa aataaaaaag gcttttaacg taaaacaatg
     1801 tggtaacgtc ttagagttca agccaactga tgaaggttat ttgaaattac ataaaacatg
     1861 gttttgtaaa tcaaaattat gcccagtttg taattggagg cgtgctatga aaaatagtta
     1921 tcaagctcaa aaagtgattg aagaagtggt taaagaaaag ccaaaagcac gttggttatt
     1981 tcttacgcta tcagcacgaa atgcaataga cggtgaacat ttagaacaaa gtttaaagca
     2041 tatgtctaag gcttttaata aattaaaaat gtatacaaaa gttaaaaaga atttaatcgg
     2101 atttttacgt tcaaccgaag taacggttaa taaaaatgac ggtagttata atcaacatat
     2161 gcacgtttta ttgtgtgttg aaaatagcta ttttaagaat aaagctaatt atataactca
     2221 agaagaatgg gttactttat ggcaaaaagc attacaagta aattatcgac cagtagcaaa
     2281 tattaaagcg atcaaaccaa atcaaaaagg cgataaagat attcgagcag ctatcaaaga
     2341 aacctcgaaa tat
//
