LOCUS       NZ_CP051422             2096 bp    DNA     circular CON 18-MAY-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Uganda strain CVM 20723
            plasmid p20723-7, complete sequence.
ACCESSION   NZ_CP051422
VERSION     NZ_CP051422.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14504525
            Assembly: GCF_016454725.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Uganda
  ORGANISM  Salmonella enterica subsp. enterica serovar Uganda
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Zhao,S., Li,C., Hsu,C.H., Tyson,G.H., Strain,E., Tate,H., Tran,T.T.,
            Abbott,J. and McDermott,P.F.
  TITLE     Comparative Genomic Analysis of 450 Strains of Salmonellaenterica
            Isolated from Diseased Animals
  JOURNAL   Genes (Basel) 11 (9), 1025 (2020)
   PUBMED   32883017
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2020) CVM/OR, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, United States of America
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: FEB-2020
            Assembly Method                   :: HGAP v. 4
            Assembly Name                     :: Microbial Assembly
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 448x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016454725.1-RS_2024_05_18
            Annotation Date                   :: 05/18/2024 02:49:22
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,974
            CDSs (total)                      :: 4,853
            Genes (coding)                    :: 4,717
            CDSs (with protein)               :: 4,717
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 136
            CDSs (without protein)            :: 136
            Pseudo Genes (ambiguous residues) :: 0 of 136
            Pseudo Genes (frameshifted)       :: 61 of 136
            Pseudo Genes (incomplete)         :: 97 of 136
            Pseudo Genes (internal stop)      :: 26 of 136
            Pseudo Genes (multiple problems)  :: 41 of 136
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP051422.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Salmonella enterica subsp. enterica serovar
                     Uganda"
                     /mol_type="genomic DNA"
                     /strain="CVM 20723"
                     /serovar="Uganda"
                     /isolation_source="bovine"
                     /sub_species="enterica"
                     /db_xref="taxon:487004"
                     /plasmid="p20723-7"
                     /geo_loc_name="USA:TN"
                     /collection_date="2002"
                     /collected_by="TN State Veterinary Diagnostic Lab"
     gene            1065..2054
                     /locus_tag="HFQ25_RS00570"
                     /old_locus_tag="HFQ25_00570"
     CDS             1065..2054
                     /locus_tag="HFQ25_RS00570"
                     /old_locus_tag="HFQ25_00570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_024136759.1"
                     /translation="MKNPDLQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEMLNRMNAAFQRMKVRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVDYDPNVDVRAVKPRKPKGG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESG"
                     /name="protein rep"
     Typing          complement(1781..1972)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.964"
                     /coverage="100.0"
                     /evalue="6.14e-93"
ORIGIN
        1 agcgtcgcgt gtgacggtat tacaattaca catcctgtcc cgaaaattcc cgccgtttct
       61 cggttttttg agcgtcgcag accgcacgac aaacgaacct aaggtgagtt tgtataagtg
      121 cgcacttcgt gagattccct gactgccagt ttgtcgattg cgcggaacgg ctgcggcacg
      181 aaaacggcaa aatgatttac tcgccgtttg tgtgggttgt tttgtggggt gtcaatgggg
      241 ttgtggtctt ttttgtgggt taaagtgtgg gtgattgtgt gggctgtgtg ttttgagttg
      301 tgggtgatta tgtgggtcat tgtgtgggct gtatgcacgg catttttttg ttctcctaaa
      361 acacaggcac gataagcggc gtacacaaaa cggggcgttt cgctccgtcg cttgtgccaa
      421 aggggacacc cctttgcaac cctgtgcggt tctacgaacc tggtcaggac tgcgccccga
      481 caccccgcca acgcctcacg gaacgcgaaa aaattccgcg taccgttcac cgttccctga
      541 ttcgtcaaac agaaaatcgc gggggcccgc gcctccggcg tgggttccga ttttgtgatt
      601 gacgacggca cgggaaaaac actggggatg gtggttggtg tcacgcagtg aggccaacca
      661 cctgcaagac ggtttttttt gttgttcaca aaatcggggt gaaagtctgt ggatgagatg
      721 ggtgtaagtg ggtggggttg ggtgttttgg gttactgaaa atcccgctca aaattcaagc
      781 gaatctcgcg cgcgatcctt gtatttatac ttaagggata actctaggat tcaaattcgc
      841 ctccagccct tgtgccgcaa ggcctgaagg gggatttgtc ggaaaatggt tttggagtta
      901 ttctgtcggg agtggtcgca ttaaaagcga cccccgcaac gagggcaatc gttcgggggt
      961 gtgaccacct gtaggaattc gaattagtga tacgactaac acaacaggtg atatggcaat
     1021 gataacacgt cagatgagcc atcgcccact atcgggtggt gcgcatgaaa aaccctgatc
     1081 tccagaacct cacggactat tccccctcag atgcgccctg ggacgctcac agaagcgttt
     1141 ctgatgacgt gggagggatt tacctgcttg cagccgaata tgagcgctac ggggcgcgta
     1201 tggccctctg tggtggttta ctgcgtttcg ggtggtctac cctcaaggaa accggagaaa
     1261 cgcgtctgag gctgcgtgag gcgcatttct gccgtgtccg gcattgtcct gtctgccagt
     1321 ggaggcgctc cctgatgtgg caagcccgtt tctaccagtc cctgccgcgt atcgtggcgg
     1381 attatcccga tgcccgctgg atgttcctga ctctgaccgt gcgcaactgt gcgatcgggg
     1441 agctgggcga gatgctgaac cggatgaatg cagcttttca gcgcatgaag gttcgcaagg
     1501 agttccggcc tgtgcagggc tggatacgta ccacggaagt cacccgcggg agcgacggca
     1561 gcgcacaccc gcacttccac accctgatga tggtgccgcc tggcatgcta aatgggaaaa
     1621 gttacgtcag gcatgaacgc tgggttgaac tctggcggga gtgtctgcgg gtcgattatg
     1681 acccgaatgt tgatgtccgg gcagtgaaac ctcgtaagcc gaagggcggc gaatcgctgg
     1741 cctgcgcgac cgccgaactg gtgcgcggtg cggtggccga aaccctgaaa tattccacga
     1801 agccggctga catggtggcc gatcctgaat ggttcctcga actgacccgc cagacgcaca
     1861 agcgccgctt tgtggcgacc ggcggcgcac tcaaagacgt gctgaaactc gatcaggaaa
     1921 ctgacgccga catggtgatc ggtgatgata tttccgaggg cgacgatgac ggttcacgaa
     1981 tcgcgttcga gtggaaaacc gaggtcagaa agtaccgtcg ctcaccgacg aaagataaaa
     2041 ctgaatcagg ctagcggggt gtcggggtgc acccctgacc agatggcaat tgtgat
//
