LOCUS       NZ_CP051414             3371 bp    DNA     circular CON 18-MAY-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Senftenberg strain CVM
            20749 plasmid p20749-1, complete sequence.
ACCESSION   NZ_CP051414
VERSION     NZ_CP051414.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14504550
            Assembly: GCF_016454665.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Senftenberg
  ORGANISM  Salmonella enterica subsp. enterica serovar Senftenberg
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3371)
  AUTHORS   Zhao,S., Li,C., Hsu,C.H., Tyson,G.H., Strain,E., Tate,H., Tran,T.T.,
            Abbott,J. and McDermott,P.F.
  TITLE     Comparative Genomic Analysis of 450 Strains of Salmonellaenterica
            Isolated from Diseased Animals
  JOURNAL   Genes (Basel) 11 (9), 1025 (2020)
   PUBMED   32883017
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3371)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2020) CVM/OR, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, United States of America
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 711x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016454665.1-RS_2024_05_18
            Annotation Date                   :: 05/18/2024 02:31:37
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,854
            CDSs (total)                      :: 4,734
            Genes (coding)                    :: 4,612
            CDSs (with protein)               :: 4,612
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 122
            CDSs (without protein)            :: 122
            Pseudo Genes (ambiguous residues) :: 0 of 122
            Pseudo Genes (frameshifted)       :: 53 of 122
            Pseudo Genes (incomplete)         :: 84 of 122
            Pseudo Genes (internal stop)      :: 24 of 122
            Pseudo Genes (multiple problems)  :: 31 of 122
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP051414.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3371
                     /organism="Salmonella enterica subsp. enterica serovar
                     Senftenberg"
                     /mol_type="genomic DNA"
                     /strain="CVM 20749"
                     /serovar="Senftenberg"
                     /isolation_source="turkey"
                     /sub_species="enterica"
                     /db_xref="taxon:28150"
                     /plasmid="p20749-1"
                     /geo_loc_name="USA:NC"
                     /collection_date="2002"
                     /collected_by="NC State Veterinary Diagnostic Lab"
     gene            complement(191..382)
                     /locus_tag="HFQ48_RS24110"
                     /old_locus_tag="HFQ48_24115"
     CDS             complement(191..382)
                     /locus_tag="HFQ48_RS24110"
                     /old_locus_tag="HFQ48_24115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165979.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNDLDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            446..769
                     /locus_tag="HFQ48_RS24115"
                     /old_locus_tag="HFQ48_24120"
     CDS             446..769
                     /locus_tag="HFQ48_RS24115"
                     /old_locus_tag="HFQ48_24120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_024132211.1"
                     /translation="MLTIRVTDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGQWSSIDRVHVVAALMAIEGELRQLRQAVREQGVR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            978..>1415
                     /locus_tag="HFQ48_RS24420"
                     /old_locus_tag="HFQ48_24125"
                     /pseudo=""
     CDS             978..>1415
                     /locus_tag="HFQ48_RS24420"
                     /old_locus_tag="HFQ48_24125"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1447..2007
                     /locus_tag="HFQ48_RS24125"
                     /old_locus_tag="HFQ48_24130"
     CDS             1447..2007
                     /locus_tag="HFQ48_RS24125"
                     /old_locus_tag="HFQ48_24130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_000067487.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKKQLDTLSTTVSMQFSTTEAELSRQQKKLLWRVIKGRILFPALTA
                     LSVTGGIFLGCWGLMEWQESKIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     gene            2014..2247
                     /locus_tag="HFQ48_RS24130"
                     /old_locus_tag="HFQ48_24135"
     CDS             2014..2247
                     /locus_tag="HFQ48_RS24130"
                     /old_locus_tag="HFQ48_24135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137389.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHEVTQRNNA
                     ILNERVVILSQQVQRLAGQVDRLSRLFIANNS"
                     /name="MbeD family mobilization/exclusion protein"
     Typing          27..110
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="87.059"
                     /coverage="95.0"
                     /evalue="8.83e-18"
     Typing          760..2330
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="92.817"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tgacatggtg cacttcccat ccatgtctgc accgatgcaa aatgagataa gccagtatac
       61 acatcgctat cgctctgtga actgggtcag ggctgcgccc cgacacccgc actgacgcgc
      121 cctggcgggc ttgtctgctc ccggcatccg ctcacaggca agctgtgaac gtctccggga
      181 gctgcatgtt tcagttgctt tcaccgtcat cgccgaagcg tgcgaggcaa ctgcggtaga
      241 gttcgtcggc gtggtcgtga agtgattcgc agatgtctgc ctgttcgtcc gcgtccagat
      301 cgttgagttt ttccagcagg gttagcgtct ggcttctgat aaagcgagcc atgttaaggg
      361 ctgttttttc ctgtttggtc atggtcttaa ggctccttgt atgggggatt tgttaggggg
      421 aatgataccg atgaaacgcg agaagatgct cacgatacgg gttaccgatg aggagcacgc
      481 ccggttactg gaacgctgcg agggtaaacg actggcggaa tggatgcggc gggtctgtct
      541 gggggagccg gttgcacgca caggaaaact gccgacacta tcgccgccat tgctgcggca
      601 tctggctgcc atcgggaaca acctgaacca gacagcccgg aaggtgaaca gcggccagtg
      661 gtcttcgatt gaccgggttc atgtggtggc cgcactgatg gccatcgagg gtgaattgcg
      721 ccagttgcgg caggctgtca gggaacaggg ggtacgggat gatagttaaa tttcatgcca
      781 gggggaaagg cggtggaagt ggcccggtcg attacctgct ggggcgggag cgtaaccgcg
      841 aaggcgcaac ggtgctccgg ggtaacccgg aagaagtgcg ggaactcatt gattccacgc
      901 cattctcgaa gaaatacact tcaggcgttc tgtcgttcgc ggagaaggag ttaccgccgg
      961 gtgaacgcga aagagtgatg acgagctttg agcgtgttct tatgcccggt ctcgaaaaag
     1021 accagtacag cattctctgg gtggaacacc aggataaggg gcggctcgaa ctgaattttg
     1081 tcatcccgaa catggagcta cagagcggta agcgcctcca gccgtactac gaccgcgcgg
     1141 acaggccgag gataaatgcc tggcagacgc tggttaatca tcattacggg ctgcgtgacc
     1201 cgaacgcacc ggagaacaga cggacgcttg tcacgccaaa taatctgcca aaagcgaaac
     1261 aggaggccgc agaagcgatt acacggggtc ttgaggctct ttaccatgcc ggggcaataa
     1321 aaacgcgtca ggatgtcaca gaggcgctta cagcggcagg ttttgaggtg gtgaggacaa
     1381 ccaaaagcag catcagtatt gccgacccgg agggggggcg gaatctcagg ctaaaggggg
     1441 cgctgtatga gcaatctttt acaaatggga acagacttcg agaagaaact gaaagagcga
     1501 gccgcttcta ccgagaacat gctgaacagc gagttcagga agctcgaaga gtctgtagac
     1561 aaggcattga gcttaaacag gcagaaaatc agagacgcta tcagcgaaca tacaacatcc
     1621 gtgaaaaagc aactggatac gctgagcacc accgtgagca tgcagttcag caccacagag
     1681 gccgaactgt cccggcagca gaaaaaactg ctctggcggg tgatcaaagg gcggatactg
     1741 tttccggcgc tgaccgcgct cagcgtcacg ggcggcattt tcctggggtg ctgggggctg
     1801 atggagtggc aggaaagcaa gattgcgaaa aatatcctga ctatcagaga gcaggaaaac
     1861 acgctggcga aactcgaggc aaaaacctgg ggggtgacgt tcgtcaatgg cgagaacggg
     1921 aaatttctgg tgttgccgga cggggtgaaa ggggaaaaca cctggacggt gggcgacaag
     1981 aacgccgtga ggctggtcag ggagtaaacg agtatgacgg aactggaagg gcatttgctg
     2041 aacgccttag agcatttgca acaggactat atgcggcggc tgaacgagtg ggagagcgcc
     2101 ttcgcggaat tgcagaagat gcacgaggtt acgcaacgga acaacgcgat actgaacgag
     2161 cgcgtcgtga tattgagtca gcaggtgcag agattagccg ggcaagtgga tcgcttgagt
     2221 cggttattta tcgcgaacaa cagctaaggg atgaacagga gcgtgcccgg tacagacatg
     2281 aggtacagga acgcgcggca cgggttcgga gtgggccatc aatggagatg tgaccgggga
     2341 agtgacgaaa tcttgccatt ttgaccagtt cgacggctgg ggcgagcgaa acaaatcgtg
     2401 tgccgtattt gtgcatagct atgcaacatc ctgaaaacgc atttcacgcg tttttgggga
     2461 ttcagccagg ggaaaacatg gtttttttac tttttgagcg taaagacgtg aaaaatctcg
     2521 ttattgcact tgcgatcttt cgtcggcggg cgtagaacga aaacagctcg ccaggaaggc
     2581 gagctgtttc gggttcattg aggtctctga cctcctcaat gttcctgtgg aaactgttga
     2641 gatccacaac agaaaccagt tcattcagtt tgcatgagcc ttctgtattc ttcaagaatt
     2701 tttcaacagc acagtctccc aggaaccccg aaaaaaacct gtttttgcag atacttgcgt
     2761 atttgcgaga atcgtttgcg gttgggggag ctgtgacgac ggcgaccgca cgcgtgagag
     2821 ttccgctacc ggcgcagaga gtttcatcga cagcggacac ctgatgagtt gccacaaaaa
     2881 ccgtatgtag cgcggctaga ttggttgagt tagaccttgg cggcagttcc cggtatgtgg
     2941 tggcgtgacg ggtgagatgg tgcggcgaag acgcatacgt cacgcaggcg cgggttcttc
     3001 cactgacgcg ccccgtgatc gatggccttg gctccgtccg gcatatcgag agcggcaaac
     3061 tacccgtccc ttcactggga ggggtgagtt gttgccgttc cctccaacct ttcaccatcc
     3121 ggcatatcgc acgatcccat gtgcaccgca actcctgata actccagtgc aaaaaaaaaa
     3181 acggatctgc atcacaacga gagtgatccc accgctcgcc gcagccccag cgaccgaacg
     3241 tagtgagcga gtgggcgagg aagcggaaga gtcacagatg caagcattgt gcacttacgc
     3301 gcctgtgcca gtgtccgcgt gtgtgctgtt tatcgggtgc gctgttttta catctgtgcg
     3361 gctttttact c
//
