LOCUS       NZ_CP051337             2264 bp    DNA     circular CON 26-JAN-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Worthington strain CVM
            33836 plasmid p33836-9, complete sequence.
ACCESSION   NZ_CP051337
VERSION     NZ_CP051337.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14504865
            Assembly: GCF_016452125.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Worthington
  ORGANISM  Salmonella enterica subsp. enterica serovar Worthington
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2264)
  AUTHORS   Zhao,S., Li,C., Hsu,C.H., Tyson,G.H., Strain,E., Tate,H., Tran,T.T.,
            Abbott,J. and McDermott,P.F.
  TITLE     Comparative Genomic Analysis of 450 Strains of Salmonellaenterica
            Isolated from Diseased Animals
  JOURNAL   Genes (Basel) 11 (9), 1025 (2020)
   PUBMED   32883017
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2264)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2020) CVM/OR, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 420x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/24/2024 14:21:41
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,413
            CDSs (total)                      :: 5,295
            Genes (coding)                    :: 5,090
            CDSs (with protein)               :: 5,090
            Genes (RNA)                       :: 118
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 205
            CDSs (without protein)            :: 205
            Pseudo Genes (ambiguous residues) :: 0 of 205
            Pseudo Genes (frameshifted)       :: 67 of 205
            Pseudo Genes (incomplete)         :: 149 of 205
            Pseudo Genes (internal stop)      :: 39 of 205
            Pseudo Genes (multiple problems)  :: 42 of 205
            Pseudo Genes (short protein)      :: 1 of 205
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP051337.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2264
                     /organism="Salmonella enterica subsp. enterica serovar
                     Worthington"
                     /mol_type="genomic DNA"
                     /strain="CVM 33836"
                     /serovar="Worthington"
                     /isolation_source="bovine"
                     /sub_species="enterica"
                     /db_xref="taxon:1160769"
                     /plasmid="p33836-9"
                     /geo_loc_name="USA:AZ"
                     /collection_date="2004"
                     /collected_by="AZ State Veterinary Diagnostic Lab"
     gene            258..524
                     /locus_tag="HFT59_RS02975"
                     /old_locus_tag="HFT59_03015"
     CDS             258..524
                     /locus_tag="HFT59_RS02975"
                     /old_locus_tag="HFT59_03015"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_223173001.1"
                     /translation="MKRSQLTLIDGCFMFGFSPGELMNLCPDERLLFVRMISAMLRRSG
                     GDAGAVMFEAYRHIVSDTNQARRSYMLDLLESVRHDYVHGGYT"
                     /name="hypothetical protein"
     gene            complement(572..760)
                     /locus_tag="HFT59_RS02980"
                     /old_locus_tag="HFT59_03020"
     CDS             complement(572..760)
                     /locus_tag="HFT59_RS02980"
                     /old_locus_tag="HFT59_03020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165998.1"
                     /translation="MTKQESAALNMAKFIRAQSLLLLEKLDVLDLDDEAADCERMHEQA
                     EALYQKLSARFGIQDGE"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(1012..1329)
                     /locus_tag="HFT59_RS02985"
                     /old_locus_tag="HFT59_03025"
     CDS             complement(1012..1329)
                     /locus_tag="HFT59_RS02985"
                     /old_locus_tag="HFT59_03025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000718045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000718044.1"
                     /translation="MKKIFILSAALIMAGCATKQYPQAANVTGPESSAMDCKAVALEIA
                     KTRSVQQEIEATGEFDGRTVLGFLGDFGIGNGMAKGEARKKAANRLNQLEALKAAKCAV
                     Q"
                     /name="hypothetical protein"
     Typing          2..114
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.105"
                     /coverage="93.0"
                     /evalue="2.12e-37"
     Typing          complement(1736..2264)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.173"
                     /coverage="87.0"
                     /evalue="0.0"
ORIGIN
        1 ttttcctcct gccacatgaa gcacttcact gattcccgca cccgtgccta catagtaagc
       61 cagtatacac tccgctagcg ctacgtgact ggttcagggc tgcgccccga cacccgctaa
      121 aagcactgac gcgcctgcgg cttgcccaac cccgcgccgt ccgggaaaga atttcccgat
      181 cgacccgacg tttctgttta cctgtgatgt taacgtttgg atctttttcc cgggtttacc
      241 tattttaatg aagcgtaatg aagcgttcac agctgacgtt aatagatggg tgcttcatgt
      301 ttggtttttc accaggagaa cttatgaacc tttgccccga tgaacgtctg ctctttgtgc
      361 ggatgatttc cgctatgctt cgccgttcgg gcggtgatgc gggtgctgtt atgtttgagg
      421 cgtatcgcca tattgtgtcc gataccaatc aagctcgtcg ttcctacatg ctcgacctgc
      481 tcgaaagcgt caggcatgac tatgtacacg gtggatatac atagttgccc tggatacgct
      541 tttcgtctaa gtgagcgttc ttttcgtctc tttattcgcc gtcctgtata ccgaagcgtg
      601 cgctcagctt ctgataaagc gcttctgcct gttcgtgcat tcgctcacag tcggctgcct
      661 cgtcatcaag atcgagcacg tcgagttttt cgagcagcag cagcgactgc gcccggataa
      721 attttgccat gttcagtgcg gctgattcct gttttgtcat acggcttttt cccggtttta
      781 tggtgatcgc agactgaaat cttacttcat tcacttgagt gcatagccat gcaggtacgc
      841 agaaatcatc aggggcgttt tttctcgata tgggcacaga aaggtgtatg tttcaggccg
      901 gagtcctcag aaacgccctg agggcgcctg aggcggtgcg ggcaacggat gttatggtaa
      961 atccagctga ttggcaggta caaaaaaagc cccgcagggc ttttttgtac cttattgaac
     1021 tgcacacttt gcagccttca gggcttccag ctgatttagc cggttagctg cttttttgcg
     1081 ggcttcgcct tttgccatgc catttcctat cccaaaatca cccaggaaac ctaatacggt
     1141 gcgcccgtca aattcgccgg ttgcctcaat ttcttgttgt acactgcgcg tttttgcgat
     1201 ttccagagct accgctttgc aatccattgc ggaagattct ggaccggtga cgttcgcggc
     1261 ctgtggatat tgctttgttg cgcatcctgc catgatcagc gctgccgata ggatgaatat
     1321 ttttttcaaa attatcctta ttttatttag gcatagttaa gagataccca ttttatcggc
     1381 aggaaatgag ggttttttag ttgaattttg ggaggggcaa ggttccatat tggtcgagga
     1441 ttctggagct gaccggcaac ggccagcgcg gctatgggcc atgcggtggt tgagcataga
     1501 aaggatcttc ttgagttcct ttttttctac gcgtaatctc ttgctctgaa aacgaaaaaa
     1561 ccacctgggg aggtggtttt tcgaaggtta agtcagttgg ggaactgctt aacctggtaa
     1621 ctggcttcag cagagcgcag ataccaaata ctgtccttcc agtgtagccg tagttaggcc
     1681 accacttcaa gaactctata gcaccatcta cattaactcg ctctgctaat cctgttacca
     1741 gtggctgctg ccagtggcgc tttgtcgtgt ctttccgggt tggactcaag acgatagtta
     1801 ccggataagg cgcagcagtc ggactgaacg gggggttcgt gcatacagtc cagcttggag
     1861 cgaactgcct tcccggaacc gagtgtcagg cgtggaatga gaaaccgcgg ccataacagc
     1921 ggaatgacac cggtacaccg aaaggcagga acaggagagc gcacgaggga gccaccaggg
     1981 ggaaacgcct ggtatcttta tagtcctgtc gggtttcgcc accactgatt tgagcgtcag
     2041 atttcgtgat gcttgtcagg ggggcggagc ctatggaaaa acggcttcgc cgcggcctta
     2101 tcgtttccct gttaagtttc ttcctggcat ctcccaggaa atttccgccc cattcgtaag
     2161 cccgcaccgc tcgccgcagc cgaacgaccg agcgcagcga gtcagtgagc gaggaagcgg
     2221 aatatctcct gtctcatata ttccgcttac gctctgctgc tgca
//
