LOCUS       NZ_CP051333             4091 bp    DNA     circular CON 26-JAN-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Worthington strain CVM
            33836 plasmid p33836-7, complete sequence.
ACCESSION   NZ_CP051333
VERSION     NZ_CP051333.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14504865
            Assembly: GCF_016452125.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Worthington
  ORGANISM  Salmonella enterica subsp. enterica serovar Worthington
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4091)
  AUTHORS   Zhao,S., Li,C., Hsu,C.H., Tyson,G.H., Strain,E., Tate,H., Tran,T.T.,
            Abbott,J. and McDermott,P.F.
  TITLE     Comparative Genomic Analysis of 450 Strains of Salmonellaenterica
            Isolated from Diseased Animals
  JOURNAL   Genes (Basel) 11 (9), 1025 (2020)
   PUBMED   32883017
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4091)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2020) CVM/OR, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 420x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/24/2024 14:21:41
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,413
            CDSs (total)                      :: 5,295
            Genes (coding)                    :: 5,090
            CDSs (with protein)               :: 5,090
            Genes (RNA)                       :: 118
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 205
            CDSs (without protein)            :: 205
            Pseudo Genes (ambiguous residues) :: 0 of 205
            Pseudo Genes (frameshifted)       :: 67 of 205
            Pseudo Genes (incomplete)         :: 149 of 205
            Pseudo Genes (internal stop)      :: 39 of 205
            Pseudo Genes (multiple problems)  :: 42 of 205
            Pseudo Genes (short protein)      :: 1 of 205
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP051333.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4091
                     /organism="Salmonella enterica subsp. enterica serovar
                     Worthington"
                     /mol_type="genomic DNA"
                     /strain="CVM 33836"
                     /serovar="Worthington"
                     /isolation_source="bovine"
                     /sub_species="enterica"
                     /db_xref="taxon:1160769"
                     /plasmid="p33836-7"
                     /geo_loc_name="USA:AZ"
                     /collection_date="2004"
                     /collected_by="AZ State Veterinary Diagnostic Lab"
     gene            complement(join(2252..4091,1..308))
                     /gene="mobQ"
                     /locus_tag="HFT59_RS01720"
                     /old_locus_tag="HFT59_01720"
     CDS             complement(join(2252..4091,1..308))
                     /gene="mobQ"
                     /locus_tag="HFT59_RS01720"
                     /old_locus_tag="HFT59_01720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016240513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_024236174.1"
                     /translation="MAIYHLSMKILSRSKGYSAVASAAYRAGEKILDERTGVIHDYTRK
                     NGVASAVILTPANAPAWCANRAELWNAVEKAERRKNSQLAREFELAIPRELAQDAARET
                     VLNFVRENFVSRGMIADVAFHNLGGSNPHAHIMLSMRAITPDGFGEKVREWNDWTHAET
                     WRGSWADHANRALANAGYQEEIDHRSYERQGVEKTPGIHLGKSACAMEKWGIETERGEQ
                     NRLINRLNLEIQVSRDELRNSELTEPARRMADLLNIELPDNATSYILHDIIEALPTDSN
                     AAWKLTSKAMSMMADMQATRRRWEDLNTERKEAMSHAASLKKSSPFSSGFSRIPLMQWV
                     APEYGREQEKIQSLSQRMEKLRQHHWKVEKQDIPASQKAFETQWQQWGASGLADLREQL
                     RKREEELRRKEQEETERRRAEQLRRNDNAVMDSGVLKAVVTGYGEAPMPGNGEMTCYLL
                     LHNRNGEYTLWGNELEKYRARIFESVDLMRDRSGYICERSEIGQRPPLQHVYSSATFEQ
                     LLTQVCQTWPQHTRDLRQPKTWPESFCLGEDRQPAMPSLAARKVDFTQGRLPPTLMPVM
                     SSVDRETRQLQLLLVMGVDDSMGGVVRLNGTLYPAFAVPTADNSQLVINALTDKGLRFA
                     GYGEAVNHDADSPARPAPELMQFHLKTWSEPLFAIVNTPEKQPDHLFRSLGFERTWDEW
                     QRDEYARTHATERRHDRGWSQ"
                     /name="mobQ"
     gene            479..769
                     /locus_tag="HFT59_RS01725"
                     /old_locus_tag="HFT59_01725"
     CDS             479..769
                     /locus_tag="HFT59_RS01725"
                     /old_locus_tag="HFT59_01725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001514113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="WP_137491003.1"
                     /translation="MSRTLEQKIADAEARLQRLKAKSRSLDTAQKVIVGAALLAKVRKP
                     RETQLRAWLLHLLKTEVTRQADVSRIQPLIDELNALPKPVPKEVSENDQQA"
                     /name="mobilization protein"
     gene            1302..2003
                     /locus_tag="HFT59_RS01730"
                     /old_locus_tag="HFT59_01730"
     CDS             1302..2003
                     /locus_tag="HFT59_RS01730"
                     /old_locus_tag="HFT59_01730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001281399.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_011666799.1"
                     /translation="MSDLIAYKSNALVEASYKLTLQEQRFLLLCIGRLKSGSDAESTEL
                     QKTMTVTAEEYFDSFPDMGRKNAEVQLQEAIDRLWDRSIILKDDEKREEFRWIQYRAQY
                     AKGEGKAQITFSDAVMPYLTQLKGQFTRVVIKNISNLSRSYSIRIYELLQQFRSTGERI
                     IALDDFRSMLDIEHKYQTYKSLNQQLLRPCVDELNQKSDLAVTLETIKKGRTVVALHFR
                     FKEDKQIKMTI"
                     /name="replication initiation protein"
     Typing          2..308
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.650000000000002e-160"
     Typing          325..475
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.157"
                     /coverage="85.0"
                     /evalue="1.64e-53"
     Typing          1303..2002
                     /name="rep_cluster_1778"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.301"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(2256..4090)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.837"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 tcccgtgcgg catcctgcgc cagttcacgg gggatggcga gttcgaactc ccgcgcaagt
       61 tgtgagtttt tccgccgctc ggctttttca acagcattcc agagttcggc gcggttcgca
      121 caccatgctg gggcgtttgc tggcgtcaga atcactgcgc tggctacacc gtttttgcgg
      181 gtgtagtcgt gaatcactcc ggtgcgctca tccagtattt tttctccggc acgataggca
      241 gcagaagcaa cggcgctgta gcccttgctt ctggaaagaa tcttcatgct gagatgataa
      301 attgccatcg tgtcgttgtt gccgttttct tttagccccg cagggcgcac acaaactcga
      361 cgaaggagag tttgtataag tgcgcacttc gtgatttgct gtgcattatg ccagttcagt
      421 ttttaaacta ccagtgacgc gctaaaatac gatttttcac cgcgcacgga gttacggaat
      481 gagtagaaca ctcgaacaga agattgccga tgctgaggcc agattgcagc gtctgaaggc
      541 gaagagcagg agcctggaca cagcgcagaa ggtcattgtg ggagcggcat tgctggcaaa
      601 ggtcaggaag cctagggaaa cacaactacg agcctggttg cttcatctcc tgaagacaga
      661 ggtaacacgg caggctgatg tgagcaggat acagccgttg attgacgaac tgaacgcgtt
      721 accaaaacca gtccccaaag aagtgtcaga aaacgaccaa caggcgtgaa tgcaccgtcc
      781 gctcgccgca gccccagcga ccgagcgtta gcgagcgagt gggcgaggaa gcggaagtga
      841 atccgtcgcc agattgagca catacgcacg gtttttcgac aggtgatatg cgctgaaccc
      901 gcatgaatac tggatttcca cagggttgag cggggttttg ctaaagcttg cgaacctgct
      961 tttttgtaac ctgttgtttt tcatgatttt ttgttttgaa caccccaagt tttccacagg
     1021 ctcgccgtta agtttttaga tcttgttttt aagatcttgt ttttaatact tgttttaggg
     1081 ccgaattttc ttattaaatt caagagttta gaagactata ggtaatataa tttaaggtaa
     1141 aggcaatatg atttaaggtg gataggcaat atgatttaag gtaaaggcaa tatgatttaa
     1201 ggtaatattc acaggaaaag ggatattaaa attaaatcat attgccttta cctaaaggaa
     1261 tgtttatatt ttgctcatta ccttaggttg agggatttac aatgtcggat ctgattgcct
     1321 acaaatccaa tgcactggtt gaggccagct ataaattgac tcttcaggaa cagcgattct
     1381 tgttactttg cattggtcga ttgaagtcgg gttctgatgc agaatccact gaattgcaaa
     1441 agaccatgac tgttaccgcc gaagagtatt tcgactcatt ccctgatatg gggcggaaaa
     1501 atgccgaggt tcagctacag gaagcaattg atcgtttgtg ggacaggtcg atcatcctta
     1561 aggacgatga gaagcgcgag gagttccgct ggatccagta tcgggcacag tacgctaaag
     1621 gtgagggcaa agcccaaatc actttttcag atgcggtcat gccttatctg acacagttga
     1681 aggggcaatt tactagagtt gtaattaaga acatctccaa tttatcaaga agttacagca
     1741 taagaatata cgaacttctc cagcaattcc gcagcacagg ggaacgtatt atcgccctcg
     1801 atgattttcg ctcaatgctt gatatagagc ataaatatca aacatataag tctctgaacc
     1861 agcaattatt aagaccttgc gttgacgaac tgaatcaaaa aagcgacttg gctgtaacgc
     1921 ttgagacgat caagaagggg cgcacggttg tagccctgca ttttcgcttc aaggaagaca
     1981 aacagatcaa gatgacgatc tagaatcgat tttaaggcct ctaaaacgct ctctgacgcg
     2041 ttttttttgt gtttggcatg cgaaggtact ggtgaagtaa aaaattgcgt cataaacgct
     2101 ctggcacagt gaaaaaagaa cccccaattt ttcgggggcg ggaaaactat aaagttgatt
     2161 tgtgttatgt gtgtgcttct tgcattcatc cctgtcgatg aacatcgacg aacataacac
     2221 gatgttaaac aaaacaaaat attggtcaca ttcactgtga ccaaccgcga tcatgtctcc
     2281 tctcggtggc gtgtgttcgg gcatattcat cacgttgcca ttcatcccag gtgcgctcaa
     2341 agcccagcga gcggaacaga tgatccggct gtttttctgg cgtgttgacg atagcaaaaa
     2401 gcggttcgct ccaggttttc agatgaaact gcataagttc cggcgcagga cgtgccggac
     2461 tgtcagcatc gtggtttacc gcttcaccat agcctgcaaa gcgtaaacct ttgtcggtca
     2521 gtgcattgat taccagctgg ctgttgtcgg ctgtggggac ggcaaacgcg ggatacagcg
     2581 taccattaag ccggacaaca ccgcccatag agtcatccac acccatgacc agcaaaagct
     2641 gaagctggcg ggtttcacgg tcgacagaac tcattaccgg catcagagtc ggtggcagac
     2701 gtccctgcgt aaaatccacc ttccttgccg ccagtgatgg catggctggc tggcggtctt
     2761 ctccaagaca gaaagactcc ggccatgtct tcggctggcg gagatcgcgg gtatgttgcg
     2821 gccatgtctg gcaaacctgc gtcagcagtt gctcaaaggt cgcagaggaa taaacatgtt
     2881 gcagtggtgg acgttgaccg atttcgcttc gctcacagat ataaccactc ctgtcacgca
     2941 ttaaatcaac actctcaaaa attctggcgc ggtatttctc cagttcgttc ccccagagcg
     3001 tatattctcc gttccggttg tgaagcagaa ggtaacaggt catttccccg ttacctggca
     3061 tgggggcctc gccatacccc gtaacgactg ctttcagtac ccctgaatcc ataacggcat
     3121 tgtcatttct cctgagctgc tccgcccgac gacgttctgt ttcctcctgc tccttccggc
     3181 gcaattcctc ttcacgttta cgcaactgtt ctcggagatc tgcaaggcca gatgcacccc
     3241 actgctgcca ctgtgtttca aatgcttttt gactcgcggg aatgtcctgt ttctcaacct
     3301 tccagtgatg ctgccgcaat ttttccatgc gctggctcaa cgactggatt ttttcctgtt
     3361 cgcggccgta ttccggtgca acccattgca tcaggggaat acgggaaaaa ccggacgaaa
     3421 acggcgatga ttttttcagg ctggcagcat ggctcatcgc ttcctttcgt tcggtgttca
     3481 gatcttccca gcgtctgcgc gtcgcctgca tatctgccat catcgacatg gctttactgg
     3541 tgagtttcca tgctgcgtta ctgtccgtcg gcaacgcttc gatgatgtca tgcagtatgt
     3601 acgaagttgc gttgtcagga agctcaatat tcagaaggtc agccatacgg cgtgcgggct
     3661 ctgtcagctc actgttcctg agttcgtcgc gggaaacctg tatttccagg ttaagcctgt
     3721 taatcaggcg attctgttcg ccgcgttctg tttcgatgcc ccacttttcc atcgcacagg
     3781 ccgactttcc gaggtgaatg ccaggcgttt tctcaacccc ctgtcgctcg tatgaacgat
     3841 ggtctatctc ttcctgataa ccggcgttcg ccagcgccct gttcgcatgg tctgcccatg
     3901 atccccgcca tgtttcggcg tgagtccagt cattccactc acggactttc tccccgaagc
     3961 cgtcaggcgt gattgccctc atggatagca tgatgtgcgc gtgtgggttt gacccgccca
     4021 gattgtgaaa ggccacgtcg gcgatcatgc cgcgactgac aaagttttcc cttacgaagt
     4081 tgagaactgt t
//
