LOCUS       NZ_CP051331             4018 bp    DNA     circular CON 18-MAY-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Senftenberg strain CVM
            34514 plasmid p34514-3, complete sequence.
ACCESSION   NZ_CP051331
VERSION     NZ_CP051331.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14504879
            Assembly: GCF_016452105.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Senftenberg
  ORGANISM  Salmonella enterica subsp. enterica serovar Senftenberg
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4018)
  AUTHORS   Zhao,S., Li,C., Hsu,C.H., Tyson,G.H., Strain,E., Tate,H., Tran,T.T.,
            Abbott,J. and McDermott,P.F.
  TITLE     Comparative Genomic Analysis of 450 Strains of Salmonellaenterica
            Isolated from Diseased Animals
  JOURNAL   Genes (Basel) 11 (9), 1025 (2020)
   PUBMED   32883017
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4018)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2020) CVM/OR, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 633x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016452105.1-RS_2024_05_18
            Annotation Date                   :: 05/18/2024 02:42:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,993
            CDSs (total)                      :: 4,873
            Genes (coding)                    :: 4,733
            CDSs (with protein)               :: 4,733
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 140
            CDSs (without protein)            :: 140
            Pseudo Genes (ambiguous residues) :: 0 of 140
            Pseudo Genes (frameshifted)       :: 58 of 140
            Pseudo Genes (incomplete)         :: 97 of 140
            Pseudo Genes (internal stop)      :: 25 of 140
            Pseudo Genes (multiple problems)  :: 32 of 140
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP051331.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4018
                     /organism="Salmonella enterica subsp. enterica serovar
                     Senftenberg"
                     /mol_type="genomic DNA"
                     /strain="CVM 34514"
                     /serovar="Senftenberg"
                     /isolation_source="turkey"
                     /sub_species="enterica"
                     /db_xref="taxon:28150"
                     /plasmid="p34514-3"
                     /geo_loc_name="USA:NC"
                     /collection_date="2004"
                     /collected_by="NC State Veterinary Diagnostic Lab"
     gene            296..619
                     /locus_tag="HFT73_RS24790"
                     /old_locus_tag="HFT73_24835"
     CDS             296..619
                     /locus_tag="HFT73_RS24790"
                     /old_locus_tag="HFT73_24835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_024191642.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQICLDEKPSRAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGTGHDRVQVVAVLMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            828..>1262
                     /locus_tag="HFT73_RS25130"
                     /pseudo=""
     CDS             828..>1262
                     /locus_tag="HFT73_RS25130"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1297..1782
                     /locus_tag="HFT73_RS24800"
                     /old_locus_tag="HFT73_24845"
     CDS             1297..1782
                     /locus_tag="HFT73_RS24800"
                     /old_locus_tag="HFT73_24845"
                     /inference="COORDINATES: protein motif:HMM:NF016710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_061390563.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMISQTWLTIVLVSALLIASSAGILWWQGQQIL
                     DNYTTIQEQKSTQAMLSEKNNGVQLTTCGEERRRCVRVNPEAGRFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            1786..2001
                     /locus_tag="HFT73_RS24805"
                     /old_locus_tag="HFT73_24850"
     CDS             1786..2001
                     /locus_tag="HFT73_RS24805"
                     /old_locus_tag="HFT73_24850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_072048928.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLMQRENA
                     ALSERVTGLSRQVQSLSDQLRRLSQG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            2130..2657
                     /locus_tag="HFT73_RS24810"
                     /old_locus_tag="HFT73_24855"
     CDS             2130..2657
                     /locus_tag="HFT73_RS24810"
                     /old_locus_tag="HFT73_24855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004883515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016246513.1"
                     /translation="MKCFWACSVSVVLAMSFTVAAAENNDNVTYTKPSAGRDLYLTCKG
                     YQVKGASVINVEKPSYLEGTGEQVEFAIITPVGASDGLKVFFDSWGFSSFGLIESHVMH
                     EHWSLVHVGGRASVKGEKIDYSFVDNQPQEGGSYKPKTGVFLYGCMNSDKRPSWVEKIY
                     TRTGVFRGGIED"
                     /name="hypothetical protein"
     gene            2912..3124
                     /locus_tag="HFT73_RS24815"
                     /old_locus_tag="HFT73_24860"
     CDS             2912..3124
                     /locus_tag="HFT73_RS24815"
                     /old_locus_tag="HFT73_24860"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_034169353.1"
                     /translation="MGDFERTFGAGADFDRIIDENNSEYFREDRRKTKNSKKKFSSFQD
                     ALVWAKANPGKTIIRSPDGVGFIEK"
                     /name="hypothetical protein"
     gene            complement(3553..3666)
                     /locus_tag="HFT73_RS25265"
                     /old_locus_tag="HFT73_24865"
     CDS             complement(3553..3666)
                     /locus_tag="HFT73_RS25265"
                     /old_locus_tag="HFT73_24865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_072035093.1"
                     /translation="MHEPPVQSDRCALSGNYRLESNPERHDKTPLAAATGN"
                     /name="replication initiation protein"
     Typing          6..183
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="87.222"
                     /coverage="83.0"
                     /evalue="4.5e-50"
     Typing          complement(3550..3923)
                     /name="rep_cluster_2373"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.0"
                     /coverage="87.0"
                     /evalue="4.83e-172"
     Typing          610..2093
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.717"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 ccgagtgagc gaggaggcgt catttcaccg ggatctgcat ttcgcactta cgccccacag
       61 cagcattttc tccctgccac atgaagcact ttcctgaatc cccactccga tttaccatgt
      121 taagccagta tacactccgc tagcgctacg tgactggttc agggctgcgc cccgaaaccc
      181 gctgaaaagt actgccgcgc cctgcgggct tgcccaacac cgctccggac aggaaaaaat
      241 ttcccgcccg aaccggtgtt atccggagga tggtttggca gaaaagcgca acaaaatgct
      301 cactatgtgg gtgacagaag acgagcaccg ccgacttctg gagcgctgtg agggtaaaca
      361 actcgcggcc tggatgcgcc agatatgcct ggacgaaaag ccctcgcgtg ctggcaaact
      421 tccatccatc tcgccggcgc tgcttcgtca gcttgccggc atgggtaaca acctcaacca
      481 gattgcccgg caggttaacg ccggtggcgg tactgggcac gatcgcgtgc aggttgtcgc
      541 cgtgctgatg gccattgatg ccggactcga gcggctgcgg cacgccgtgc tggaaaaggg
      601 ggcagacgat gatcgttaag tttcatccca gaggccgcgg cggtggcggc ggtccggtgg
      661 attatctgct ggggaaagac cggcagcgcg acggcgccag cgttctgcag ggtaagccgg
      721 aggaagtgcg ggagcttatt gacgcctcgc cttacgccaa gaaatacacc tccggcgtgc
      781 tgtcttttgc cgaacaggat ttgccgcccg gccagcgtga aaagctgatg gcgagctttg
      841 agcgggttct gatgcccgga ctcgataaag accagtacag cgtactgtgg gttgagcacc
      901 gggacaaagg gcggctggag ctgaacttcc tgatcccgaa cacggagctg ctgaccggca
      961 gacgtctcca gccgtattac gaccgcgccg accgtccgcg cattgatgcc tggcagacca
     1021 tagtgaacgg cagactgggg ctgcacgacc cgaacgcgcc ggaaaaccgg cgggcgctgg
     1081 ttacaccgtc cgcgctgccg gaagcgaagc aggaagccgc ccaggcgatt acgcgcggcc
     1141 tactttccct tgcctcatcc ggggagctga aaacccgtca ggacgtcact gaggcgctgg
     1201 aaagtgcggg ttttgaggtg gtgcgcacca cgaaaagcag catcagcatt gccgaccctg
     1261 acggggggcg aaacatccga ctgaagggag ccatctatga acagtctttt aacgctggcg
     1321 aaggacttag agcagaaatc gaaagcgcag cagcagacta ccggcgagat gctgaaagcc
     1381 gcattcagcg agcacgagaa gtctgtcaga gcggaactga gcgaaagcga gaagagaatc
     1441 agcgccgcca tcctcgacca cgaccggaag ctgtcctcag ccatgagcca acgcacgaaa
     1501 gggatgctgc gtatgatcag ccagacgtgg ctgaccatag tcctggtctc cgcgctactg
     1561 atcgcctcga gcgcgggcat tctgtggtgg caggggcaac agatactcga caactacacg
     1621 accatccagg aacagaagag cacgcaggcc atgctttcag agaagaacaa cggcgtccag
     1681 ctcacgacct gcggggagga gagacgccgc tgcgtgaggg tgaacccgga agcgggaaga
     1741 ttcggagagg attcgagctg gatgatactg gcggggaaat agcacatgac ggaactggaa
     1801 aaacagttgc tgagcgcatt agagcagcta cagcaggact actcgaaaag gctggacgag
     1861 tgggagaacg ccttcgcgga atggcggacg atgtctgggc ttatgcaacg ggagaacgcg
     1921 gcgctgagcg agcgcgtcac gggcttgagc aggcaggtgc agagtttgag cgatcagctg
     1981 cgccgattgt cgcaaggctg aatggcatcg aggcgcaccg ggagcaggag cgcgcggcgc
     2041 agcaccagaa agcgctggag ctggaacgat cgcagcggca gaaaggtttt gagcttggaa
     2101 tgtagttaat caatgaaaag ggatgcgtta tgaaatgttt ctgggcttgc tcagtctcgg
     2161 tggttttggc tatgtcattt acagtcgctg ctgcggagaa taacgacaac gttacatata
     2221 caaaaccgtc agccgggagg gacttatatc ttacctgtaa aggttatcag gtgaaggggg
     2281 catctgtaat taacgtcgag aaaccttctt accttgaagg tactggtgag caggttgaat
     2341 ttgcaatcat tactcctgtt ggtgcgtctg acggactcaa ggtctttttt gattcatggg
     2401 gtttttcttc atttggattg attgaaagcc atgtgatgca tgagcactgg tctttagttc
     2461 atgttggggg gcgtgcttca gtcaaaggtg aaaagattga ttattcattt gtagataacc
     2521 agccacagga gggggggagc tataaaccca aaacaggtgt gttcctgtac ggctgcatga
     2581 actcggataa aagaccatct tgggtcgaaa agatctacac aagaacaggt gtgtttcgag
     2641 ggggcataga agactaaaat actgcttaca gcatgaaaat ccattgaaca gagtgtcagt
     2701 tcatttccgt gcataactat gcataccgta agaacttacg gggggcattt atcggcgttt
     2761 ttacgtggta agaggtgctc ttttgcggtt catggcgcag aacggtgctg aggctgtctg
     2821 cggcggtgcg aacaagggat gttatggtaa ataagagtgt cttttggata ttttaaatct
     2881 gtttttttat taaatttaat gggggcagaa aatgggggat tttgagcgta cctttggagc
     2941 tggtgctgat tttgatcgga taattgatga gaataacagc gaatattttc gagaagatcg
     3001 ccgaaaaact aaaaattcaa aaaaaaaatt ctcttctttt caagatgctt tggtttgggc
     3061 gaaagctaat cctggcaaaa cgataataag atctccagac ggtgtggggt ttattgaaaa
     3121 atgaaagagt ggattcactg taaaacaaca gtcatttttt ggacaacact gtctatatac
     3181 gtactcatat gtttcacagt gtcgtatgtt ggagtctatg ttacgtacgt tgcagggcct
     3241 attttgttag ttacaggcat tcttgcatgg cttacgaaac ctagctgtaa tccaaagtga
     3301 ctgggctaga cgaactttat ccccccataa aacccgcttt tttaaacgga tcttcttgag
     3361 atcattcatg gagaatcgta atctcttagc actgtaaacg aaaaaaccgc ccagcaaggc
     3421 ggttttttcg aaggttctca gagcagcaac tctttgaacc gaggtaactg gcttggagga
     3481 gcacagtcac caaaacttgt cctttcagtt tagccttaac cggcgcataa cttcaagact
     3541 aactcctcta aatcagttac cagtggctgc tgccagtggc gttttgtcgt gtctttccgg
     3601 gttggactca agtcgatagt taccggataa ggcgcagcgg tcggactgaa cggggggttc
     3661 gtgcatacag tccagcttgg agcgaactgc ctacccggaa ctgagtgtca ggcgtggaat
     3721 tagataaacg cggccataac agcggaatga caccggtaaa ccgaaaggca ggaacaggag
     3781 agcgcacgag ggagctacca gggggaaacg cctgggatct ttatagtcct gtcgggtttc
     3841 gccaccactg atttgagcgt cagatttcgt gatgcttgtc aggggggcgg agcctatgga
     3901 aaaacggcaa cgccgcatcc tttttccgcc ctttctgatt gatttccgct tagtctcttt
     3961 atccagccat tcgtaagctg gcaacgcccg ccgcagtctc acggcaggag cgcagcga
//
