LOCUS       NZ_CP051328             3375 bp    DNA     circular CON 18-MAY-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Senftenberg strain CVM
            34514 plasmid p34514-4, complete sequence.
ACCESSION   NZ_CP051328
VERSION     NZ_CP051328.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14504879
            Assembly: GCF_016452105.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Senftenberg
  ORGANISM  Salmonella enterica subsp. enterica serovar Senftenberg
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3375)
  AUTHORS   Zhao,S., Li,C., Hsu,C.H., Tyson,G.H., Strain,E., Tate,H., Tran,T.T.,
            Abbott,J. and McDermott,P.F.
  TITLE     Comparative Genomic Analysis of 450 Strains of Salmonellaenterica
            Isolated from Diseased Animals
  JOURNAL   Genes (Basel) 11 (9), 1025 (2020)
   PUBMED   32883017
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3375)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2020) CVM/OR, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 633x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016452105.1-RS_2024_05_18
            Annotation Date                   :: 05/18/2024 02:42:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,993
            CDSs (total)                      :: 4,873
            Genes (coding)                    :: 4,733
            CDSs (with protein)               :: 4,733
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 140
            CDSs (without protein)            :: 140
            Pseudo Genes (ambiguous residues) :: 0 of 140
            Pseudo Genes (frameshifted)       :: 58 of 140
            Pseudo Genes (incomplete)         :: 97 of 140
            Pseudo Genes (internal stop)      :: 25 of 140
            Pseudo Genes (multiple problems)  :: 32 of 140
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP051328.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3375
                     /organism="Salmonella enterica subsp. enterica serovar
                     Senftenberg"
                     /mol_type="genomic DNA"
                     /strain="CVM 34514"
                     /serovar="Senftenberg"
                     /isolation_source="turkey"
                     /sub_species="enterica"
                     /db_xref="taxon:28150"
                     /plasmid="p34514-4"
                     /geo_loc_name="USA:NC"
                     /collection_date="2004"
                     /collected_by="NC State Veterinary Diagnostic Lab"
     gene            complement(38..271)
                     /locus_tag="HFT73_RS00385"
                     /old_locus_tag="HFT73_00410"
     CDS             complement(38..271)
                     /locus_tag="HFT73_RS00385"
                     /old_locus_tag="HFT73_00410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137389.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHEVTQRNNA
                     ILNERVVILSQQVQRLAGQVDRLSRLFIANNS"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(278..838)
                     /locus_tag="HFT73_RS00390"
                     /old_locus_tag="HFT73_00415"
     CDS             complement(278..838)
                     /locus_tag="HFT73_RS00390"
                     /old_locus_tag="HFT73_00415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_000067487.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKKQLDTLSTTVSMQFSTTEAELSRQQKKLLWRVIKGRILFPALTA
                     LSVTGGIFLGCWGLMEWQESKIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     gene            complement(<870..1526)
                     /locus_tag="HFT73_RS24860"
                     /old_locus_tag="HFT73_00420"
                     /pseudo=""
     CDS             complement(<870..1526)
                     /locus_tag="HFT73_RS24860"
                     /old_locus_tag="HFT73_00420"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(1516..1839)
                     /locus_tag="HFT73_RS00400"
                     /old_locus_tag="HFT73_00425"
     CDS             complement(1516..1839)
                     /locus_tag="HFT73_RS00400"
                     /old_locus_tag="HFT73_00425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_024132211.1"
                     /translation="MLTIRVTDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGQWSSIDRVHVVAALMAIEGELRQLRQAVREQGVR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1903..2094
                     /locus_tag="HFT73_RS00405"
                     /old_locus_tag="HFT73_00430"
     CDS             1903..2094
                     /locus_tag="HFT73_RS00405"
                     /old_locus_tag="HFT73_00430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165979.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNDLDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          complement(2176..2256)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="87.805"
                     /coverage="93.0"
                     /evalue="8.68e-18"
     Typing          complement(22..1526)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.219"
                     /coverage="95.0"
                     /evalue="0.0"
ORIGIN
        1 acctcatgtc tgtaccgggc acgctcctgt tcatccctta gctgttgttc gcgataaata
       61 accgactcaa gcgatccact tgcccggcta atctctgcac ctgctgactc aatatcacga
      121 cgcgctcgtt cagtatcgcg ttgttccgtt gcgtaacctc gtgcatcttc tgcaattccg
      181 cgaaggcgct ctcccactcg ttcagccgcc gcatatagtc ctgttgcaaa tgctctaagg
      241 cgttcagcaa atgcccttcc agttccgtca tactcgttta ctccctgacc agcctcacgg
      301 cgttcttgtc gcccaccgtc caggtgtttt cccctttcac cccgtccggc aacaccagaa
      361 atttcccgtt ctcgccattg acgaacgtca ccccccaggt ttttgcctcg agtttcgcca
      421 gcgtgttttc ctgctctctg atagtcagga tatttttcgc aatcttgctt tcctgccact
      481 ccatcagccc ccagcacccc aggaaaatgc cgcccgtgac gctgagcgcg gtcagcgccg
      541 gaaacagtat ccgccctttg atcacccgcc agagcagttt tttctgctgc cgggacagtt
      601 cggcctctgt ggtgctgaac tgcatgctca cggtggtgct cagcgtatcc agttgctttt
      661 tcacggatgt tgtatgttcg ctgatagcgt ctctgatttt ctgcctgttt aagctcaatg
      721 ccttgtctac agactcttcg agcttcctga actcgctgtt cagcatgttc tcggtagaag
      781 cggctcgctc tttcagtttc ttctcgaagt ctgttcccat ttgtaaaaga ttgctcatac
      841 agcgccccct ttagcctgag attccgcccc ccctccgggt cggcaatact gatgctgctt
      901 ttggttgtcc tcaccacctc aaaacctgcc gctgtaagcg cctctgtgac atcctgacgc
      961 gtttttattg ctccggcatg gtaaagagcc tcaagacccc gtgtaatcgc ttctgcggcc
     1021 tcctgtttcg cttttggcag attatttggc gtgacaagcg tccgtctgtt ctccggtgcg
     1081 ttcgggtcac gcagcccgta atgatgatta accagcgtct gccaggcatt tatcctcggc
     1141 ctgtccgcgc ggtcgtagta cggctggagg cgcttaccgc tctgtagctc catgttcggg
     1201 atgacaaaat tcagttcgag ccgcccctta tcctggtgtt ccacccagag aatgctgtac
     1261 tggtcttttt cgagaccggg cataagaaca cgctcaaagc tcgtcatcac tctttcgcgt
     1321 tcacccggcg gtaactcctt ctccgcgaac gacagaacgc ctgaagtgta tttcttcgag
     1381 aatggcgtgg aatcaatgag ttcccgcact tcttccgggt taccccggag caccgttgcg
     1441 ccttcgcggt tacgctcccg ccccagcagg taatcgaccg ggccacttcc accgcctttc
     1501 cccctggcat gaaatttaac tatcatcccg taccccctgt tccctgacag cctgccgcaa
     1561 ctggcgcaat tcaccctcga tggccatcag tgcggccacc acatgaaccc ggtcaatcga
     1621 agaccactgg ccgctgttca ccttccgggc tgtctggttc aggttgttcc cgatggcagc
     1681 cagatgccgc agcaatggcg gcgatagtgt cggcagtttt cctgtgcgtg caaccggctc
     1741 ccccagacag acccgccgca tccattccgc cagtcgttta ccctcgcagc gttccagtaa
     1801 ccgggcgtgc tcctcatcgg taacccgtat cgtgagcatc ttctcgcgtt tcatcggtat
     1861 cattccccct aacaaatccc ccatacaagg agccttaaga ccatgaccaa acaggaaaaa
     1921 acagccctta acatggctcg ctttatcaga agccagacgc taaccctgct ggaaaaactc
     1981 aacgatctgg acgcggacga acaggcagac atctgcgaat cacttcacga ccacgccgac
     2041 gaactctacc gcagttgcct cgcacgcttc ggcgatgacg gtgaaagcaa ctgaaacatg
     2101 cagctcccgg agacgttcac agcttgcctg tgagcggatg ccgggagcag acaagcccgc
     2161 cagggcgcgt cagtgcgggt gtcggggcgc agccctgacc cagttcacag agcgatagcg
     2221 atgtgtatac tggcttatct cattttgcat cggtgcagac atggatggga agtgcaccat
     2281 gtcaggagta aaaagccgca cagatgtaaa aacagcgcac ccgataaaca gcacacacgc
     2341 ggacactggc acaggcgcgt aagtgcacaa tgcttgcatc tgtgactctt ccgcttcctc
     2401 gcccactcgc tcactacgtt cggtcgctgg ggctgcggcg agcggtggga tcactctcgt
     2461 tgtgatgcag atccgttttt tttttttttg cactggagtt atcaggagtt gcggtgcaca
     2521 tgggatcgtg cgatatgccg gatggtgaaa ggttggaggg aacggcaaca actcacccct
     2581 cccagtgaag ggacgggtag tttgccgctc tcgatatgcc ggacggagcc aaggccatcg
     2641 atcacggggc gcgtcagtgg aagaacccgc gcctgcgtga cgtatgcgtc ttcgccgcac
     2701 catctcaccc gtcacgccac cacataccgg gaactgccgc caaggtctaa ctcaaccaat
     2761 ctagccgcgc tacatacggt ttttgtggca actcatcagg tgtccgctgt cgatgaaact
     2821 ctctgcgccg gtagcggaac tctcacgcgt gcggtcgccg tcgtcacagc tcccccaacc
     2881 gcaaacgatt ctcgcaaata cgcaagtatc tgcaaaaaca ggtttttttc ggggttcctg
     2941 ggagactgtg ctgttgaaaa attcttgaag aatacagaag gctcatgcaa actgaatgaa
     3001 ctggtttctg ttgtggatct caacagtttc cacaggaaca ttgaggaggt cagagacctc
     3061 aatgaacccg aaacagctcg ccttcctggc gagctgtttt cgttctacgc ccgccgacga
     3121 aagatcgcaa gtgcaataac gagatttttc acgtctttac gctcaaaaag taaaaaaacc
     3181 atgttttccc ctggctgaat ccccaaaaac gcgtgaaatg cgttttcagg atgttgcata
     3241 gctatgcaca aatacggcac acgatttgtt tcgctcgccc cagccgtcga actggtcaaa
     3301 atggcaagat ttcgtcactt ccccggtcac atctccattg atggcccact ccgaacccgt
     3361 gccgcgcgtt cctgt
//
