LOCUS       NZ_CP051326             2470 bp    DNA     circular CON 18-MAY-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Senftenberg strain CVM
            34514 plasmid p34514-6, complete sequence.
ACCESSION   NZ_CP051326
VERSION     NZ_CP051326.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14504879
            Assembly: GCF_016452105.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Senftenberg
  ORGANISM  Salmonella enterica subsp. enterica serovar Senftenberg
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2470)
  AUTHORS   Zhao,S., Li,C., Hsu,C.H., Tyson,G.H., Strain,E., Tate,H., Tran,T.T.,
            Abbott,J. and McDermott,P.F.
  TITLE     Comparative Genomic Analysis of 450 Strains of Salmonellaenterica
            Isolated from Diseased Animals
  JOURNAL   Genes (Basel) 11 (9), 1025 (2020)
   PUBMED   32883017
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2470)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2020) CVM/OR, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 633x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016452105.1-RS_2024_05_18
            Annotation Date                   :: 05/18/2024 02:42:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,993
            CDSs (total)                      :: 4,873
            Genes (coding)                    :: 4,733
            CDSs (with protein)               :: 4,733
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 140
            CDSs (without protein)            :: 140
            Pseudo Genes (ambiguous residues) :: 0 of 140
            Pseudo Genes (frameshifted)       :: 58 of 140
            Pseudo Genes (incomplete)         :: 97 of 140
            Pseudo Genes (internal stop)      :: 25 of 140
            Pseudo Genes (multiple problems)  :: 32 of 140
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP051326.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2470
                     /organism="Salmonella enterica subsp. enterica serovar
                     Senftenberg"
                     /mol_type="genomic DNA"
                     /strain="CVM 34514"
                     /serovar="Senftenberg"
                     /isolation_source="turkey"
                     /sub_species="enterica"
                     /db_xref="taxon:28150"
                     /plasmid="p34514-6"
                     /geo_loc_name="USA:NC"
                     /collection_date="2004"
                     /collected_by="NC State Veterinary Diagnostic Lab"
     gene            join(2429..2470,1..462)
                     /locus_tag="HFT73_RS00025"
                     /old_locus_tag="HFT73_00035"
     CDS             join(2429..2470,1..462)
                     /locus_tag="HFT73_RS00025"
                     /old_locus_tag="HFT73_00035"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_157921495.1"
                     /translation="MKIAAALGVCHFLVYKTTTPECWRRRLRMILAKKRPFPGKGHARM
                     TLWVQRLHINYKIASAFTPERGCTTELHQKYIKITSLLRQIAGVQQNYIKSTSLLRHFY
                     IIFASDLTSELFVHPPPLPGPPARAENGFSGCAGNASRPRNKLRIRSPLSGWFVVAFRA
                     FIGF"
                     /name="hypothetical protein"
     gene            complement(696..1121)
                     /locus_tag="HFT73_RS00030"
                     /old_locus_tag="HFT73_00040"
     CDS             complement(696..1121)
                     /locus_tag="HFT73_RS00030"
                     /old_locus_tag="HFT73_00040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676030.1"
                     /GO_function="GO:0005515 - protein binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="WP_015328245.1"
                     /translation="MGSYVDQSLTRNESVISRAQTSWIPTIIPVIIGILLLPFYGLGLL
                     IIIPVLLRVWSTELALTNQRVIAKVGLIRRNTVELRIDKVESLGIHQGILGRIFNYGSI
                     VIKGTGGTNTPIPNIKAPMQFRSIVNNHIEEMNSKQQ"
                     /name="PH domain-containing protein"
     gene            2100..2291
                     /locus_tag="HFT73_RS00035"
                     /old_locus_tag="HFT73_00050"
     CDS             2100..2291
                     /locus_tag="HFT73_RS00035"
                     /old_locus_tag="HFT73_00050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041614.1"
                     /translation="MNKQQKTAVNMAKFIQDQSLLLLDRLNELDLDHEADFCEKLHEDA
                     ERLYRSLSARLNEQQDGA"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          complement(1601..2225)
                     /name="rep_cluster_2327"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.292"
                     /coverage="99.0"
                     /evalue="3.32e-165"
ORIGIN
        1 tataaaacga ccacccccga gtgctggcgc cgcaggttaa ggatgattct ggctaaaaag
       61 cgtccttttc cgggaaaggg tcatgctcgt atgaccctat gggttcagcg actacacata
      121 aactacaaaa ttgcatctgc ttttacccca gaacgcgggt gtacaacaga attacatcaa
      181 aagtacatca aaattacatc acttttacgt cagatcgcgg gtgtacaaca gaattacatc
      241 aaaagtacat cacttttacg tcacttttac atcatttttg cgtcagatct gacctctgaa
      301 ctattcgtac atccgccccc tcttcctggg cctcctgcac gtgctgaaaa tggtttttcc
      361 ggctgtgccg gcaacgcctc acggccacgc aataaattgc gcatccgttc accgttatcg
      421 gggtggttcg tggtggcttt cagggcgttc atcggatttt agccgctaaa atcccggcca
      481 ggtatgtccg tgcatagcca tgcagtcgcg ccagaatcat caggggcgtt ttttctcgat
      541 atgggcacag aaaggtgtgt gtttcaggcc ggaggcctca gaaacgccct gagggcctct
      601 gaggcggtgc tgataacgga tgttatggta aatccagctg attggcaggt acaaaaaaag
      661 ccccgtaggg ctttttttgt aatgctacga ggaagctact gctgcttaga attcatttcc
      721 tcgatatgat tgttcacaat cgatctgaat tgcattggcg ccttgatgtt tggaattggc
      781 gtgttggttc cgccagtgcc tttaatcacg atagagccat agttaaagat tcgtcccagt
      841 atcccttgat gtatgccaag gctttcaact ttatcaatac ggagttccac cgtattgcgt
      901 cggatcaaac ccacttttgc gatgactctt tggttagtta atgcaagctc cgttgaccaa
      961 actctaagga gcactgggat tattataagt aaccctaagc cgtaaaaagg cagcaacaag
     1021 attccgataa ttactgggat gattgttgga atccaggagg tttgagcgcg agatattacg
     1081 gattcatttc tcgtcaatga ttggtctacg tagcttccca taaggttata tccatttaga
     1141 aaaaatagga tttttccctt tttaaggcga atcagcaata gaaactttat gtctccgtgg
     1201 taggtataca aaatttacgg agagcgtagc gaccgtcgca cagttcggtt ctttcctttc
     1261 gtgccgcaac tggcttgatt ctgtggtggt ggtggcggct gctatgtctc atatactcct
     1321 ggcgttgcaa tcctttatcc catatctgtc gaatatcaca gatgaacttc ttgagatcct
     1381 gtccgttgcg tcgtaatctc ttgctctgaa aacgaaaaaa ccgccttgca gggcggtttt
     1441 tcgaaggttc tcagagctag caactctttg aaccgaggta actggcttgg aggagcgcag
     1501 tcaccaaaac ttgtcctttc agtttagcct taaccggcgc ataacttcaa gactaactcc
     1561 tctaaatcag ttaccagtgg ctgctgccag tggcgctttg tcgtgtcttt ccgggttgga
     1621 ctcaagatga tagttaccgg acaaggcgca gcggtcggac tgaacggggg gttcgtgcat
     1681 acagtccagc ttggagcgaa ctgccttccc ggaactgagt gtcaggcgtg gaatgagata
     1741 aacgcggcca taacagcgga atgacaccgg taaaccgaaa ggcaggaaca ggagagcgca
     1801 cgagggagct accaggggga aacgcctggg atctttatag tcctgtcggg tttcgccgcc
     1861 actgatttga gcgtcagatt tcgtgatgct tgtcaggggg ggcggagcct atggaaaaac
     1921 gccccgccgg ggcgtggcct tttcgccctt gtccttagct ttcgttatgc ttaccgttat
     1981 gttatctgct tatcttctct ccgctcgccg cagactcatg accgaacgga gtgagcgaat
     2041 gagcgaggaa gcggaaaacc atcagaacgt acagtaagca ctttcgcgcc ggggccttca
     2101 tgaacaaaca acaaaagact gccgttaaca tggctaaatt catccaggat cagtccctgc
     2161 ttcttctgga caggcttaat gagctggatc tggatcatga ggctgatttc tgcgagaaac
     2221 tccatgagga tgcggaacgc ctttaccgaa gcctgtcagc gcgcctgaat gagcagcagg
     2281 acggtgcgta atggctccgt tctgggtatt accggagtaa taccggcatc gccttaattt
     2341 tcattgtgtt agcgcttaac attattaccc cggtaatacc cagaatccct gtattttttc
     2401 ttttttattt atttttcatg aagttgcgat gaaaatcgca gctgcgttag gtgtatgtca
     2461 ttttttagta
//
