LOCUS       NZ_CP051325             3319 bp    DNA     circular CON 18-MAY-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Senftenberg strain CVM
            34514 plasmid p34514-5, complete sequence.
ACCESSION   NZ_CP051325
VERSION     NZ_CP051325.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14504879
            Assembly: GCF_016452105.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Senftenberg
  ORGANISM  Salmonella enterica subsp. enterica serovar Senftenberg
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3319)
  AUTHORS   Zhao,S., Li,C., Hsu,C.H., Tyson,G.H., Strain,E., Tate,H., Tran,T.T.,
            Abbott,J. and McDermott,P.F.
  TITLE     Comparative Genomic Analysis of 450 Strains of Salmonellaenterica
            Isolated from Diseased Animals
  JOURNAL   Genes (Basel) 11 (9), 1025 (2020)
   PUBMED   32883017
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3319)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2020) CVM/OR, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 633x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016452105.1-RS_2024_05_18
            Annotation Date                   :: 05/18/2024 02:42:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,993
            CDSs (total)                      :: 4,873
            Genes (coding)                    :: 4,733
            CDSs (with protein)               :: 4,733
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 140
            CDSs (without protein)            :: 140
            Pseudo Genes (ambiguous residues) :: 0 of 140
            Pseudo Genes (frameshifted)       :: 58 of 140
            Pseudo Genes (incomplete)         :: 97 of 140
            Pseudo Genes (internal stop)      :: 25 of 140
            Pseudo Genes (multiple problems)  :: 32 of 140
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP051325.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3319
                     /organism="Salmonella enterica subsp. enterica serovar
                     Senftenberg"
                     /mol_type="genomic DNA"
                     /strain="CVM 34514"
                     /serovar="Senftenberg"
                     /isolation_source="turkey"
                     /sub_species="enterica"
                     /db_xref="taxon:28150"
                     /plasmid="p34514-5"
                     /geo_loc_name="USA:NC"
                     /collection_date="2004"
                     /collected_by="NC State Veterinary Diagnostic Lab"
     gene            complement(join(3167..3319,1..42))
                     /locus_tag="HFT73_RS00005"
                     /old_locus_tag="HFT73_00005"
     CDS             complement(join(3167..3319,1..42))
                     /locus_tag="HFT73_RS00005"
                     /old_locus_tag="HFT73_00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041620.1"
                     /translation="MNKQQQAVLNMAGFIKSQSLTLLEKLDALDADEQAAMCEKLHELA
                     EELQNSIQTRFEVENSTER"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            327..650
                     /gene="mobA"
                     /locus_tag="HFT73_RS00010"
                     /old_locus_tag="HFT73_00010"
     CDS             327..650
                     /gene="mobA"
                     /locus_tag="HFT73_RS00010"
                     /old_locus_tag="HFT73_00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052604.1"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization protein MobA"
                     /protein_id="WP_000166966.1"
                     /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
                     AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
                     MAD"
                     /name="mobA"
     gene            complement(885..1265)
                     /gene="lsoB"
                     /locus_tag="HFT73_RS00015"
                     /old_locus_tag="HFT73_00015"
     CDS             complement(885..1265)
                     /gene="lsoB"
                     /locus_tag="HFT73_RS00015"
                     /old_locus_tag="HFT73_00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system antitoxin LsoB"
                     /protein_id="WP_000710826.1"
                     /translation="MKKDKKYQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKK
                     SKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNF
                     DKINVNLLSKATSFALKKGIPI"
                     /name="lsoB"
     gene            complement(1262..2302)
                     /gene="lsoA"
                     /locus_tag="HFT73_RS00020"
                     /old_locus_tag="HFT73_00020"
     CDS             complement(1262..2302)
                     /gene="lsoA"
                     /locus_tag="HFT73_RS00020"
                     /old_locus_tag="HFT73_00020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA
                     endoribonuclease LsoA"
                     /protein_id="WP_000068433.1"
                     /translation="MAQNPFKALNINIDKIESALTQNGVTNYSSNVKNERETHISGTYK
                     GIDFLIKLMPSGGNTTIGRASGQNNTYFDEIALIIKENCLYSDTKNFEYTIPKFSDDDR
                     ANLFEFLSEEGITITEDNNNDPNCKHQYIMTTSNGDRVRAKIYKRGSIQFQGKYLQIAS
                     LINDFMCSILNMKEIVEQKNKEFNVDIKKETIESELHSKLPKSIDKIHEDIKKQLSCSL
                     IMKKIDVEMEDYSTYCFSALRAIEGFIYQILNDVCNPSSSKNLGEYFTENKPKYIIREI
                     HQETINGEIAEVLCECYTYWHENRHGLFHMKPGIADTKTINKLESIAIIDTVCQLIDGG
                     VARLKL"
                     /name="lsoA"
     gene            complement(2567..2680)
                     /locus_tag="HFT73_RS24830"
     CDS             complement(2567..2680)
                     /locus_tag="HFT73_RS24830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001459398.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPVRHDLSPLAAAIGN"
                     /name="hypothetical protein"
     Typing          78..318
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.12e-123"
     Typing          complement(2609..3138)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.972"
                     /coverage="97.0"
                     /evalue="0.0"
     Typing          328..647
                     /name="MOBF"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.065"
                     /coverage="100.0"
                     /evalue="1.76e-62"
ORIGIN
        1 gaatcctgcc atgttgagta cggcttgctg ctgcttgttc atcttttcgt tttctccgtt
       61 ctgtctgtca tctgcgttgt gtgattatat cgcgtaccac ttttcgactg ttttaccgcc
      121 ggtattctgc cgtctgacgc tttgacgggt atttctgcct gacaatactg tcactgccaa
      181 aaaactgccg tgcctttgtc ggtaattcga gcttgctgac aggacaggat gtgcaattgt
      241 tataccgcgc atacatgcac gctattacaa ttaccctggt cagggcttcg ccccgacacc
      301 ccatgtcaga tacggagcca tgttttatga caaaacgaag tggaagtaat acgcgcaggc
      361 gggctatcag tcgccctgtt cgtctgacgg cagaagaaga ccaggaaatc agaaaaaggg
      421 ctgctgaatg cggcaagacc gtttctggtt ttttacgggc ggcagctctc ggtaagaaag
      481 ttaactcact gactgatgac cgggtgctga aagaagttat gcgactgggg gcgttgcaga
      541 aaaaactctt tatcgacggc aagcgtgtcg gggacagaga gtatgcggag gtgctgatcg
      601 ctattacgga gtatcaccgt gccctgttat ccaggcttat ggcagattag cttcccggag
      661 agaaactgtc gaaaacagac ggtatgaacg ccgtaagccc ccaaaccgat cgccattcac
      721 tttcatgcat agctatgcag tgagctgaaa gcgatcctga cgcatttttc cggtttaccc
      781 cggggaaaac atctcttttt gcggtgtctg cgtcagaatc gcgttcagcg cgttttggcg
      841 gtgcgcgtaa tgagacgtta tggtaaatgt cttctggctt gatattatat tggaatgcct
      901 tttttcaaag caaatgatgt ggctttggat agaaggttta cgttgatctt atcaaagttt
      961 tttttaaaga acgaagccga gagctcagat aaatcattat attcatcagt tttcgtaact
     1021 ttgtttaatg tgtaacttga aaacttctcg ccattaaatg acgtatagac gtaacgatct
     1081 ttttttccac cgttaggaat tattaaatca aaaaaaacat cacccttgct tttctttttc
     1141 tttaagtcgg attcgatttt tgagaaaaat tcgctcgggc tataaatatc agtagcatag
     1201 acaataaata aagttttatc tttatttttt attgcttcta tttgatattt tttatctttt
     1261 ttcataattt caacctagct acgccaccat ctattaattg gcaaacggta tcgatgattg
     1321 cgattgattc taatttgtta attgtcttcg tgtcagctat tcctggtttc atatgaaaca
     1381 aaccatgcct gttctcatgc cagtaagtgt agcattcaca caaaacttcc gctatttcac
     1441 catttatagt ttcttggtgt atttctctga ttatatattt gggtttgttt tcagtgaagt
     1501 attcgccaag gttctttgat gatgatggat tgcaaacatc attaagtatt tgatatataa
     1561 agccttctat ggctcttaat gcagagaagc agtatgttga gtaatcttcc atttcgacat
     1621 ctattttttt cattattagc gagcatgata gctgtttttt gatatcttca tggattttat
     1681 cgatgctttt tggtagtttg ctatgcaact cggactcaat agtttctttt tttatgtcaa
     1741 cattaaattc tttatttttt tgttcgacaa tctctttcat gtttagtatt gagcacatga
     1801 aatcgttaat caaactcgcg atttgaaggt attttccttg gaattgaata gagccgcgct
     1861 tgtaaatttt tgccctgacc ctgtcaccat tgctggtggt cataatatat tggtgtttac
     1921 aattaggatc gttattatta tcttctgtta ttgttatccc ctcttcagaa agaaattcaa
     1981 atagatttgc cctgtcatca tcactgaatt ttggaatggt gtattcaaag ttctttgtgt
     2041 ctgaatacaa acagttttct tttataatca aggcgatttc atcaaagtaa gtgttatttt
     2101 gcccagacgc tcttccgata gtggtatttc cgcctgatgg cattagtttt attaagaagt
     2161 ctattccttt atatgtgcca gatatgtgag tttctctttc gttttttaca ttagaggaat
     2221 agtttgtgac gccattctgc gtcagagcag actcaatctt gtcaatattg atatttagtg
     2281 ctttaaacgg gttctgtgcc attgggtcaa tccgttgttt tttttgaata tgtacagatc
     2341 ttgttttttt gtcaacggaa tagctgttcg ttgacttgat agaccgattg attcatcatc
     2401 tcataaataa agaaaaacca ccgctaccaa cggtggtttt ctcaaggttc gctgagctac
     2461 caactctttg aaccaaggta actggcttgg aggagcgcag tcaccaaaat ctgttctttc
     2521 agtttagcct taacaggtgc ataacttcaa gacaaactcc tctaaatcag ttaccaatgg
     2581 ctgctgccag tggcgataag tcgtgtctta ccgggttgga ctcaagacga tagttaccgg
     2641 ataaggcgca gcggtcgggc tgaacggggg gttcgtgcac acagcccagc ttggagcgaa
     2701 cgacctacac cgaactgaga taccaacagc gtgagctatg agaaagcgcc acgcttcccg
     2761 aagggagaaa ggcggacagg tatccggtaa gcggcagggt cggaacagga gagcgcacga
     2821 gggagcttcc agggggaaac gcctggtatc tttatagtcc tgtcgggttt cgccacctct
     2881 ggcttgagcg tcgatttttg tgatgctcgt caggggggcg gagcctatgg aaaaacgcct
     2941 gcggcgttgg cttcttccgg tgctttgctt tttgctcaca tgttctttcc ggctttatcc
     3001 cctgattctg tggataaccg tattaccgct tttgagtgag ctgacaccgc tcgccgcagt
     3061 cgaacgaccg agcgtagcga gtcagtgagc gaggaagcgg aagagcgcct tatgtgacat
     3121 tttctcctta cgctctgttg tgccgttcgg catcctgtcc tgagagttat ctctctgtgc
     3181 tattttctac ttcaaagcgt gtctggatgc tgttctggag ttcttctgcg agttcgtgca
     3241 gcttctcaca catggcagcc tgttcgtcag catcgagtgc gtccagcttt tcgagcagcg
     3301 tcaggctctg gctttttat
//
