LOCUS       NZ_CP051324             2496 bp    DNA     circular CON 26-JAN-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Muenster strain CVM
            34526 plasmid p34526-4, complete sequence.
ACCESSION   NZ_CP051324
VERSION     NZ_CP051324.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14504890
            Assembly: GCF_016452085.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Muenster
  ORGANISM  Salmonella enterica subsp. enterica serovar Muenster
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2496)
  AUTHORS   Zhao,S., Li,C., Hsu,C.H., Tyson,G.H., Strain,E., Tate,H., Tran,T.T.,
            Abbott,J. and McDermott,P.F.
  TITLE     Comparative Genomic Analysis of 450 Strains of Salmonellaenterica
            Isolated from Diseased Animals
  JOURNAL   Genes (Basel) 11 (9), 1025 (2020)
   PUBMED   32883017
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2496)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2020) CVM/OR, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 318x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/24/2024 14:16:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,010
            CDSs (total)                      :: 4,886
            Genes (coding)                    :: 4,742
            CDSs (with protein)               :: 4,742
            Genes (RNA)                       :: 124
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 144
            CDSs (without protein)            :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 58 of 144
            Pseudo Genes (incomplete)         :: 100 of 144
            Pseudo Genes (internal stop)      :: 21 of 144
            Pseudo Genes (multiple problems)  :: 31 of 144
            Pseudo Genes (short protein)      :: 1 of 144
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP051324.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2496
                     /organism="Salmonella enterica subsp. enterica serovar
                     Muenster"
                     /mol_type="genomic DNA"
                     /strain="CVM 34526"
                     /serovar="Muenster"
                     /isolation_source="turkey"
                     /sub_species="enterica"
                     /db_xref="taxon:82689"
                     /plasmid="p34526-4"
                     /geo_loc_name="USA:NC"
                     /collection_date="2004"
                     /collected_by="NC State Veterinary Diagnostic Lab"
     gene            3..86
                     /locus_tag="HFT84_RS24830"
                     /old_locus_tag="HFT84_24845"
     CDS             3..86
                     /locus_tag="HFT84_RS24830"
                     /old_locus_tag="HFT84_24845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032623649.1"
                     /translation="MHEPPVQSDRCALSGNYQLESNPERHD"
                     /name="hypothetical protein"
     gene            565..792
                     /locus_tag="HFT84_RS24835"
                     /old_locus_tag="HFT84_24850"
     CDS             565..792
                     /locus_tag="HFT84_RS24835"
                     /old_locus_tag="HFT84_24850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     gene            1158..1343
                     /locus_tag="HFT84_RS24840"
                     /old_locus_tag="HFT84_24855"
     CDS             1158..1343
                     /locus_tag="HFT84_RS24840"
                     /old_locus_tag="HFT84_24855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_013772937.1"
                     /translation="MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEENA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(1634..1825)
                     /locus_tag="HFT84_RS24845"
                     /old_locus_tag="HFT84_24860"
     CDS             complement(1634..1825)
                     /locus_tag="HFT84_RS24845"
                     /old_locus_tag="HFT84_24860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_021243041.1"
                     /translation="MTLSDDERHLLVSVVSVWLRRAGGDAGAMMLDAYRQILSETEPAV
                     RTVMLEFLESVRIHYISS"
                     /name="hypothetical protein"
     Typing          complement(1391..1478)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          complement(2..93)
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.699"
                     /coverage="100.0"
                     /evalue="1.51e-33"
     Typing          2106..2496
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.62"
                     /coverage="99.0"
                     /evalue="1.3499999999999998e-138"
ORIGIN
        1 gtatgcacga accccccgtt cagtccgacc gctgcgcctt atccggtaac tatcaacttg
       61 agtccaaccc ggaaagacac gactaatcgc cattggcaac ggccattggc aaacaggatg
      121 tgcgagagat gtctcaagag ttcttgaagt ggcggcctta gtgaggctac actgaaagga
      181 caaatttggt gacatgtctc gcacaagact gttaccacgg ttaggggatc tgccaggatt
      241 acctaacctt cgaaaaacca cctgccaggg tggttttttc gtttacaggg caagagatta
      301 cgcgcggaaa aaaaggatct caagaagatc ctttataaat tagacatcca acctcacaaa
      361 gaggaatact taaatcatct tggtatatgt atcggccgga ttacatctca tataagcctc
      421 ctccccgcct gacaccacac tttgaccata gcacctcgcg cctaactcga tatacagccc
      481 accatcaagc ctcttttcac ataaaaaatg acctatagtt agatggttag tgaccaaaac
      541 tgatatggat aaaaggagct ggctttgaaa aagatttttg tttcagtgtt cgcagcggca
      601 gttgcgcttt cagccctcac cggctgcacg cgcacaagct atgccataca caccaatgac
      661 ggtcgcacta ttgtcagcga cggcaaacct aaagaatcag actcaggcct gcttggctat
      721 acagacgcga atggtgtcaa acagcagatc aataaaaccg acgttaaaga agtctccgaa
      781 attccgcact gagcatcttc tccgaaaaag gccgctaatg tggccttttt ctttacctgt
      841 ggttctccgc caaaatccca gcaaattgca tcaccaaagc taaaagcttt cagggttgtc
      901 taaaaagcac aagacataag aggaagtgcg gtattttata atcaagcccc caagaattta
      961 ccataacatc cgttgcccgc accgcctgag acgcgttcag cgcgttcctg acgaaaccat
     1021 gacaaaaacc acaacaaacc accccggaac ccgtcagaaa cgcgcctgtt aaattttaac
     1081 ggcatgcatg actatgcacc agaatgacgc catgctcttt tcacgcaaaa atcatcacca
     1141 gacggggaaa atcaccagtg accagacagg aatccgccgc cctcaatatg gccaaattta
     1201 tccgcgcaca gacacttctc ctccttgagc ggctcgagca gatggatctg gatgaggctg
     1261 ccggctgctg tgagcacctg cacgatcagg ccgaagcgct ttacgccatg ctgaacgcac
     1321 agataggcga ggaaaatgcg tgaaaatcgg tgaacgggtg cgcaattcag tgcgcggccg
     1381 tgaggcgatg gcggggtgtc ggggcgcagc cctgaccagg gtatttgtga tgccggcgcg
     1441 tgcgcggtat tacaaatgca catcctgtcc cggaacggac accgggaaac agcaaaaaaa
     1501 accgggcggc acgcccggaa ctcaatcaag ttagattaga ttactctcac tcgtccataa
     1561 cagcatcatg gaacgacgac caccgtccgt gacggccgcc tcgtttaagt atggacagaa
     1621 atacagaaaa tgctcaggac gaaatgtaat gaatgcgaac ggattcaaga aattcgagca
     1681 tgacagtcct tacggccggt tcggtttcag acaaaatctg ccggtatgca tccagcatca
     1741 tggctccggc atcccctccg gcacgccgta gccagaccga aacaacggac acaagcaggt
     1801 gtcgctcatc atcactaaga gtcatcaggg ctccggaaga aaaaccaaac atggcttacc
     1861 tactgttaac ggcaacgcag aagaaaggtt tacagggtag cgggcaggga tgaaaaaaaa
     1921 aaaaattgca gtcaggccgg aacggctgct gaaccggtac aggcgggttc cgggcgcagc
     1981 gccggaccag tcacggagca ctagcggagt gtatactggc ttaagatgta gcatggcagt
     2041 aacacatagc attaatgcca cataagacag gcgcagaaag tgaaagaaaa cgcgtcagga
     2101 gaaaatgtga tacagaatat attccgcttc ctcgctcact gactcgctcc gctcggtcgt
     2161 tcggctgcgg cgagcgggac gggcttacgg atggatcaga aatttcctgg gggatgccag
     2221 gaagatactt aacgaagaaa gcataaggcc gcgccaaagc cgtttttcca taggctccgc
     2281 ccccctgaca agcatcacag aatctgacgc tcaaatcagt ggtggcgaaa cccgatgcgg
     2341 cttaaagata ccaggcgttt ccccctggtg gctccctcgt gctcccccgc attcctgcct
     2401 ttcggtttac cggtgtcact ccgctgttat ggccgcggtt tctcattcca cgcctgacac
     2461 tcagttccgg gaaggcagtt cgctccagga tggact
//
