LOCUS       NZ_CP051323             4074 bp    DNA     circular CON 26-JAN-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Muenster strain CVM
            34526 plasmid p34526-3, complete sequence.
ACCESSION   NZ_CP051323
VERSION     NZ_CP051323.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14504890
            Assembly: GCF_016452085.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Muenster
  ORGANISM  Salmonella enterica subsp. enterica serovar Muenster
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4074)
  AUTHORS   Zhao,S., Li,C., Hsu,C.H., Tyson,G.H., Strain,E., Tate,H., Tran,T.T.,
            Abbott,J. and McDermott,P.F.
  TITLE     Comparative Genomic Analysis of 450 Strains of Salmonellaenterica
            Isolated from Diseased Animals
  JOURNAL   Genes (Basel) 11 (9), 1025 (2020)
   PUBMED   32883017
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4074)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2020) CVM/OR, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 318x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/24/2024 14:16:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,010
            CDSs (total)                      :: 4,886
            Genes (coding)                    :: 4,742
            CDSs (with protein)               :: 4,742
            Genes (RNA)                       :: 124
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 144
            CDSs (without protein)            :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 58 of 144
            Pseudo Genes (incomplete)         :: 100 of 144
            Pseudo Genes (internal stop)      :: 21 of 144
            Pseudo Genes (multiple problems)  :: 31 of 144
            Pseudo Genes (short protein)      :: 1 of 144
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP051323.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4074
                     /organism="Salmonella enterica subsp. enterica serovar
                     Muenster"
                     /mol_type="genomic DNA"
                     /strain="CVM 34526"
                     /serovar="Muenster"
                     /isolation_source="turkey"
                     /sub_species="enterica"
                     /db_xref="taxon:82689"
                     /plasmid="p34526-3"
                     /geo_loc_name="USA:NC"
                     /collection_date="2004"
                     /collected_by="NC State Veterinary Diagnostic Lab"
     gene            complement(join(1924..4074,1..9))
                     /gene="mobQ"
                     /locus_tag="HFT84_RS24815"
                     /old_locus_tag="HFT84_24830"
     CDS             complement(join(1924..4074,1..9))
                     /gene="mobQ"
                     /locus_tag="HFT84_RS24815"
                     /old_locus_tag="HFT84_24830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016240513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_016245161.1"
                     /translation="MAIYHLSMKIISRSSGYSAVASAAYRSGSLMLDERTGLTHDYTRK
                     SGVAEAVILTPATAPAWCTNRAELWNAVEKAERRKNSQLAREIELAIPRELPQDAARET
                     VLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLTTRAVGPAGFGGKVRDWNDRTHAET
                     WRASWADHANRALANAGYQEEIDHRSYERQGLEKTPGIHLGKSACAMETRGIETERGEQ
                     NRLINRLNLEIQISRTELRNSGLTEPARRVADLLNIVLPDNATSYTLRDIIEALPKDSN
                     AAWKLTSNAMSMMADMQATRRRWEELNTERKEAMSHAASLKKSSPFSSGFSRIPLMQWA
                     APEYRSEQGKIQSLSQQMEKLRQHYRKVEKQDIPASQTAFEKQWQQWGASGLAALRVQL
                     LKREEELRRKEQEDTERSRAERRAEQLRKNDNAVMDSGVLSAVVTGYGEAPMPGNGEMT
                     CYLLLHNRNGEYTLWGNELEKYRTRIFERVDLMRDRSGYICDRSEIGQHPPLQRVYSSA
                     TFEQLLTQVCQTWPQYTRNLRQPKTWPESFCLGEDRQPAMPSLAARKVDFTQGRLPPTL
                     MPVMSSVDRETRQLQLLLVMGVDDSLGGVVRLNGTLYPAFAVPSADNSQLVISALTDKG
                     LRYAGYGVAVNHDADSHISPAPELMEFHLKTREAPLFAAVNTPEKQPDHLFRSLGFNRT
                     WDEWRREEDARTHTTERRHDRGWSQ"
                     /name="mobQ"
     gene            188..442
                     /gene="mobC"
                     /locus_tag="HFT84_RS24820"
                     /old_locus_tag="HFT84_24835"
     CDS             188..442
                     /gene="mobC"
                     /locus_tag="HFT84_RS24820"
                     /old_locus_tag="HFT84_24835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000091747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase accessory protein MobC"
                     /protein_id="WP_000091748.1"
                     /translation="MSRTLEQKIADAEARLQRLKAKSRSLDTAQKVVVGAALLAKVRKP
                     EEVQLRAWLLQFLKTEVTRQADVTRILPLINELEALPGQ"
                     /name="mobC"
     gene            974..1666
                     /locus_tag="HFT84_RS24825"
                     /old_locus_tag="HFT84_24840"
     CDS             974..1666
                     /locus_tag="HFT84_RS24825"
                     /old_locus_tag="HFT84_24840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001281399.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_001281403.1"
                     /translation="MSDLIAYKSNALVEASYKLTLQEQRFLLLCISRLKSGADAELQKT
                     MTITAAEYFDSFPDMGRKNAEVQLQEAIDRLWDRSIILKNDEKREEFRWIQYRAQYAKG
                     EAKARITFSDAVMPYLTQLKGQFTRVVIKNISGLSSSYSIRIYEFLQQFRSTGERIIAL
                     NDFRSMLGIENKYKQFRDLNKILIKPCVDELNKKSDLAVTVETIKKGRTVVALHFRFKE
                     DKQIKMTI"
                     /name="replication initiation protein"
     Typing          11..187
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="5.61e-88"
     Typing          complement(3726..4074)
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="97.714"
                     /coverage="97.0"
                     /evalue="6.64e-170"
     Typing          975..1666
                     /name="rep_cluster_1778"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.965"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          complement(1928..4074)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.581"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 aatcgccatt tctgccgtaa tgcctttttg tagttttctt tcagccccgc agggcgcaca
       61 caatcgaaac ggagtggaga ttgtataagt gcgcacttcg tgatttgtcg tgcattatgc
      121 cagctcagtt tttaaactac cagtggcgcg ctaaaatgcg atttttcatc gcgcacggag
      181 ttacatcatg agcagaacgc tcgaacagaa gattgctgat gctgaggcga gattacagcg
      241 cctgaaggcg aagagccgga gcctggatac agcgcagaag gttgttgtgg gtgcagcatt
      301 gctggcaaag gtcagaaagc cggaggaggt gcagttgcgt gcctggttac tccagttcct
      361 gaagacagag gtgacacgac aggctgatgt gacgcgcata ctgccgctga ttaacgagct
      421 ggaggcgctg ccaggacagt gattgtattg tccgctcgcc gcagccccag cgaccgagcg
      481 ttagcgagcg agtgggcgag gaagcggaag tgaatccgtc gccaggttga gcacatacgc
      541 acggtttttc ggcaggtgat atgcgctgaa cccgcatgaa tactggattt ccacagggtt
      601 ggagggggag tattcggaac ttgcaattct gctttcttgc aacacattgt ttttattggt
      661 tttttgtttt tagcacccca agttatccac aggctcgccg ttaagttttt agatcttgtt
      721 tttaagatct tgtttttaat acttgtttta ggggtgaaat tcattaataa aatcaatatg
      781 ttatagtggt atatgtggag gaatttaagg taaaggtgga ggaatttaag gtgtttaggt
      841 ggaggaattt aaggtaaagg tggaggaatt taaggtgtta ttcacagaaa tgtgaggata
      901 taaaaaaaaa cattccacat ttcttatttg tggggcacat taaagcatca ccacatttga
      961 acgggatctt tgtatgtcgg acttgattgc ctacaagtcg aatgctttgg ttgaggccag
     1021 ctacaagttg accctacagg aacaacgttt tctgttgctg tgtatcagtc gattgaaatc
     1081 tggtgctgat gctgaattgc aaaagacaat gaccattacc gctgcggaat attttgattc
     1141 attccctgac atggggcgga aaaatgccga ggttcagtta caggaagcga tcgatcgttt
     1201 atgggacagg tcgatcattc tcaagaatga cgagaagcgt gaggagttcc gctggatcca
     1261 gtatcgagca cagtacgcta aaggtgaggc caaggctcga ataacctttt ctgacgcggt
     1321 aatgccttat ctgacgcaac tgaaggggca attcacgcgc gttgttataa aaaacatatc
     1381 aggtttatca agtagttaca gtataagaat atacgagttc ctccagcaat tccgcagtac
     1441 gggagagaga attattgctc ttaatgactt tcgttcaatg ttagggattg aaaataaata
     1501 caaacaattc agagacttaa ataaaatact aataaaaccc tgtgttgacg aactgaacaa
     1561 aaaaagcgac ctggctgtaa cggttgagac gatcaaaaag gggcgcacgg ttgtagccct
     1621 gcattttcgc ttcaaggaag acaaacagat caagatgacg atctaaaatc gattttaagg
     1681 cacctaaaac gctccctgct gcgttttttt tgtgttagta gtgcgaaggt actattgaag
     1741 tgaaaaattg cgtcaaaaac gctctgatgc agcgaaaaaa gaacccccaa tttttggggg
     1801 cggaaaaaca aaactatgct tgcgttatgt gagtgtgctt cttgcattca tccctgtcga
     1861 tgaacattga agaacatcga cgaacataac acgatgttaa acaaaacaaa atattgttca
     1921 cattcactgt gaccaaccgc gatcatgtct cctctcggtg gtgtgtgttc ttgcatcttc
     1981 ctcgcgccgc cattcgtccc aggtacgatt gaaacccagc gagcggaaca gatgatccgg
     2041 ctgtttttct ggtgtgttga cggcagcaaa aagcggtgcc tcacgggttt tcagatgaaa
     2101 ctccataagt tccggcgcag gtgatatgtg gctgtctgca tcgtgattta cggcaacacc
     2161 ataccctgca taccgtaacc ccttatcggt cagtgcactg atgaccagct ggctgttatc
     2221 ggctgaggga acggcaaacg cgggatacag cgtaccatta agccggacaa caccgcccag
     2281 agagtcatcc acgcccatga ccagcaaaag ctgaagctgg cgggtttccc ggtcgacaga
     2341 actcattacc ggcatcagcg tcggtggcag acgtccctgc gtaaaatcca ccttccttgc
     2401 tgccagtgat ggcatggctg gctggcggtc ttctccaaga cagaaagact ccggccatgt
     2461 cttcggctgg cggagattgc gggtatattg cggccatgtc tggcaaacct gcgtcagaag
     2521 ttgctcaaag gtcgcagagg aataaacacg ttgcagtggt ggatgttgac cgatttcgct
     2581 tcggtcacag atataaccac tcctgtcacg cattaaatca acacgctcaa agattctggt
     2641 gcggtatttc tccagctcgt tcccccagag cgtatattct ccgttccggt tgtgaagcag
     2701 aaggtaacag gtcatttccc cgttaccagg catgggggcc tcgccatacc ccgtaacgac
     2761 tgcgctcagt acccctgaat ccataacggc attgtcattt ttcctgagct gttccgctcg
     2821 tcgctccgcg cgactacgtt ctgtatcctc ctgctccttc cggcgcaatt cctcttcacg
     2881 tttaagcaac tggactctga gagctgcaag gccggatgcc ccccactgct gccactgttt
     2941 ttcaaatgcc gtctgactcg cgggaatgtc ctgtttctcc accttccggt aatgctgtcg
     3001 caatttttcc atttgctggc tcagcgactg gatttttccc tgttcgctac ggtattccgg
     3061 tgccgcccat tgcatcaggg gaatacggga aaaaccggac gaaaacggcg atgatttttt
     3121 caggctggca gcatggctca tcgcttcctt tcgttcggtg ttcagctctt cccagcgtct
     3181 gcgcgtcgcc tgcatatctg ccatcatcga catggcatta ctggtgagtt tccatgccgc
     3241 attactgtcc ttcggcaacg cttcgatgat gtcacgtagt gtgtacgaag ttgcgttgtc
     3301 aggaagcacg atattcagaa ggtcagccac acggcgggca ggctctgtca gcccgctgtt
     3361 cctgagttca gtgcgggaaa tctgtatttc caggttaagc ctgttaatca gacgattctg
     3421 ttcgccgcgt tctgtttcga taccgcgtgt ttccatcgca caggcagact ttccgaggtg
     3481 aataccaggc gttttctcaa gcccctgtcg ctcgtatgaa cgatggtcta tctcttcctg
     3541 ataaccggcg ttcgccagtg ctctgtttgc atggtcagcc catgatgcac gccacgtctc
     3601 ggcatgtgtc cggtcgttcc agtccctgac ctttccgccg aacccagcag gtccgacagc
     3661 cctcgtggtc agcatgatgt gcgcatgggg atttgtttta tccatgtgat ggaacgccac
     3721 atcagcaatc atgccctgac tgacaaaatt ttctctgaca aaggcgagaa cggtttcccg
     3781 tgcggcatcc tgcggcagtt cacgggggat agcgagttca atttcccgcg caagttgtga
     3841 gttcttccgg cgttcggcct tctcaacggc attccagagt tcggcacggt tcgtacacca
     3901 agcaggggct gtcgcggggg tcagaatcac agcttcagcc acaccgcttt tgcgggtgta
     3961 gtcgtgagtc agtccggtac gctcatcaag catcagtgaa ccggaacgat aggcagcgga
     4021 agctacggcg ctgtagccgc tgcttctgga gataattttc atgctgagat gata
//
