LOCUS       NZ_CP051150             4439 bp    DNA     circular CON 29-APR-2024
DEFINITION  Staphylococcus pseudintermedius strain 6109 plasmid unnamed1,
            complete sequence.
ACCESSION   NZ_CP051150
VERSION     NZ_CP051150.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14548661
            Assembly: GCF_017795485.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 4439)
  AUTHORS   Paterson,G.K.
  TITLE     Whole genome sequence of a methicillin-resistant Staphylococcus
            pseudintermedius isolates from canine pyoderma
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4439)
  AUTHORS   Paterson,G.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2020) Royal (Dick) School of Veterinary Studies,
            University of Edinburgh, Easter Bush Campus, Midlothian EH25 9RG,
            United Kingdom
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 114.0x
            Sequencing Technology             :: Illumina HiSeq; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017795485.1-RS_2024_04_29
            Annotation Date                   :: 04/29/2024 03:26:39
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,709
            CDSs (total)                      :: 2,627
            Genes (coding)                    :: 2,571
            CDSs (with protein)               :: 2,571
            Genes (RNA)                       :: 82
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 16 of 56
            Pseudo Genes (incomplete)         :: 35 of 56
            Pseudo Genes (internal stop)      :: 14 of 56
            Pseudo Genes (multiple problems)  :: 8 of 56
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP051150.1.
            Bacteria and source DNA available from Dr. Gavin K. Paterson,
            University of Edinburgh.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4439
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /strain="6109"
                     /isolation_source="Skin swab"
                     /host="Canis lupus familiaris"
                     /db_xref="taxon:283734"
                     /plasmid="unnamed1"
                     /geo_loc_name="United Kingdom: Edinburgh"
                     /collection_date="2014-01"
                     /collected_by="Royal (Dick) School of Veterinary Studies,
                     University of Edinburgh"
     ARG             complement(3..577)
                     /name="tet(K)"
                     /gene="tet(K)"
                     /gene_name="major facilitator superfamily (MFS) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="tetracycline antibiotic"
                     /identity="100.0"
                     /coverage="41.83"
     ARG             complement(3638..4437)
                     /name="tet(K)"
                     /gene="tet(K)"
                     /gene_name="major facilitator superfamily (MFS) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="tetracycline antibiotic"
                     /identity="100.0"
                     /coverage="57.95"
     gene            complement(739..1683)
                     /locus_tag="HF583_RS13605"
                     /old_locus_tag="HF583_13625"
     CDS             complement(739..1683)
                     /locus_tag="HF583_RS13605"
                     /old_locus_tag="HF583_13625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000277654.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003916 - DNA topoisomerase activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="WP_000277654.1"
                     /translation="MYKNNHANHSNHLENHDLDNFSKTGYSNSRLDAHTVCISDPKLSF
                     DAMTIVGNLNRDNAQALSKFMSVEPQIRLWDILQTKFKAKALQEKVYIEYDKVKADSWD
                     RRNMRIEFNPNKLTRDEMIWLKQNIISYMEDDGFTRLDLAFDFEDDLSDYYAMSDKAVK
                     KTIFYGRNGKPETKYFGVRDSNRFIRIYNKKQERKDNADAEVMSEHLWRVEIELKRDMV
                     DYWNDCFSDLHILQPDWKTIQRTADRAIVFMLLSDEEEWGKLHRNSRTKYKNLIKEISP
                     VDLTDLMKSTLKANEKQLQKQIDFWQHEFKFWK"
                     /name="replication initiation factor domain-containing
                     protein"
     gene            complement(2210..3451)
                     /gene="mobV"
                     /locus_tag="HF583_RS13610"
                     /old_locus_tag="HF583_13630"
     CDS             complement(2210..3451)
                     /gene="mobV"
                     /locus_tag="HF583_RS13610"
                     /old_locus_tag="HF583_13630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010889940.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_000122374.1"
                     /translation="MSYSIVRVSKVKSGTNTTGIQKHVQRENNNYENEDIDHSKTYLNY
                     DLVNANKQNFNNLIDEKIEQNYTGKRKIRTDAIKHIDGLITSDNDFFDNQTPEDTKQFF
                     EYAKEFLEQEYGKDNLLYATVHMDEKTPHMHYGVVPITDDGRLSAKEVVGNKKALTAFQ
                     DRFNEHVKQRGYDLERGQSRQVTNAKHEQISQYKQKTEYHKQEYERESQKTDHIKQKND
                     KLMQEYQKSLNTLKKPINVPYEQETEKVGGLFSKEIQETGNVVISQKDFNEFQKQIKAA
                     QDISEDYEYIKSGRALDDKDKEIREKDDLLNKAVERIENADDNFNQLYENAKPLKENIE
                     IALKLLKILLKELERVLGRNTFAERVNKLTEDEPKLNGLAGNLDKKMNPELYSEQEQQQ
                     EQQKNQKRDRGMHL"
                     /name="mobV"
     Typing          complement(740..1683)
                     /name="rep_cluster_1118"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          complement(2214..3451)
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 taccaggtac cattacttta ataagaaaag gtatagttac tattgtaatc ataggaagta
       61 taagtaggta agaccaatga atataatgtg ctattattcc ccctattgaa ggacctaacc
      121 cttcacctaa agctacaatt gatcctataa aaccaaaggc tttgccttgt ttttttcttg
      181 taatatttct agctacaacc accataatca gtgaagggaa tgcagcagat cctactcctt
      241 gtactaacct accaaaaatc aaaataaaaa agtgattgtg accaataaaa gcaatcaatg
      301 aaccaagaca gctcaaacta ataccaataa ttaacaattt ttttatattt atataatcag
      361 ataattttcc atatactgct gttcctatcg aaaaagttaa catatatgca gtgtttaccc
      421 agtttgtaat tccaggagta gtattaaaat gatttgcaat atcaggtaaa gaaacattta
      481 aaaccatttc atttaataca ctaaaaaatg aaagaataca aagccaaaat aaaacgctat
      541 aaaacaaacc tttaaatttt ttatataaac taaacaattt tacctcttta cttgaggtga
      601 ctaaagttta taggggtaaa ttattctttc acctcatata aattccccaa atttttaaat
      661 agacacttca taaaaaaatc ctcctaaatt agaatagttt aaatatatca tttttgttca
      721 gtaatattaa tatgtacact atttccaaaa tttaaattca tgttgccaaa aatcgatttg
      781 tttttgcaat tgtttttcgt tcgcttttaa agtcgatttc attaagtccg ttaaatcgac
      841 tggcgaaatt tcttttatca aattcttata ttttgttcta gaatttctgt gaagctttcc
      901 ccattcttct tcatcactca ataacataaa aactattgct ctatccgcag tgcgttggat
      961 agttttccaa tctggttgca agatatgtaa atcactaaag caatcattcc agtaatccac
     1021 catatctctt ttaagttcga tttctacacg ccataaatgt tcagacataa cttcagcatc
     1081 tgcattatct ttacgttctt gctttttatt ataaattcta ataaatctat tactatctct
     1141 cacgccaaaa tattttgttt ctggcttacc attacgacca taaaaaatag ttttcttaac
     1201 tgctttatca gacattgcat agtagtcact caaatcatct tcaaaatcaa aggctaaatc
     1261 taatcttgta aaaccgtcat cttccatgta gcttattata ttttgtttta accaaatcat
     1321 ttcatctcgt gtaagtttgt ttggattaaa ttcaatacgc atattacgtc tatcccaact
     1381 atctgctttc actttgtcat attcaatata aactttttct tgaagtgctt tagctttaaa
     1441 ctttgtttga agaatatccc aaagtcttat ttggggctct acactcataa atttagaaag
     1501 ggcttgagcg ttgtctcggt tgagatttcc aacgatcgtc attgcatcaa aacttaattt
     1561 tggatcagat atgcacacag tatgtgcgtc caaccggcta ttagagtagc cggttttaga
     1621 aaaattgtct aaatcgtgat tttccaaatg atttgaatga tttgcatgat tgtttttata
     1681 cataaaaaat cgactcctta atctcaattt cgtttaagga atcgctcacc caaatataca
     1741 tcttgatgta tatttaaata tcgtttaata tctaaatata caagattata aaaacaactc
     1801 agtgtttttt tctttgaatg atgtcgttca caaactttgg tcagggcgtg agcgactcct
     1861 ttttattttg ttattaatat aacactatca aaagacttgg tctaatcaga tcaagtcttt
     1921 ttttatttaa gcatttgtat tatctggtaa acagttaaaa ctactaaaac accaagtaca
     1981 tacttacttg ttataaaatt ctcaaaggct tctctgaatt tcatttcttc aactcctttt
     2041 attgctttat tccaatttcc ttattggtcg gaacctacag ggctttatgt gttgttgagt
     2101 tggtactttc ttgggattaa tcccaattca agtccaacca actcgctaac aagttagcta
     2161 acacatagcc cattccaacc aataagtttt ctcggcataa atgcatgttc tataagtgca
     2221 tacctctatc tcgtttttga ttcttttgtt gttcttgttg ctgttcctgt tctgaatata
     2281 attctggatt cattttttta tctaagtttc ctgctaaacc atttagtttt ggttcatctt
     2341 ctgttaactt attaactctt tccgcaaagg tatttcttcc taaaactcgt tctaactctt
     2401 ttagtaagat ttttaaaagc tttaacgcta tttctatatt ctctttaagt ggctttgcat
     2461 tttcgtaaag ttggttaaaa ttatcgtctg cgttttcaat acgctcaact gctttattta
     2521 ataaatcatc tttctctcgt atttccttat ctttatcatc taaggctcta ccagacttta
     2581 tatactcgta atcttccgaa atatcttgag cagcttttat ctgtttctga aattcattga
     2641 aatctttttg gcttattaca acatttccag tttcttgtat ttctttgcta aataaaccac
     2701 ctactttttc agtttcttgc tcatacggaa catttatagg ctttttaagc gtatttaacg
     2761 atttttggta ctcttgcatt aatttatcgt tcttttgctt tatatggtct gttttttggc
     2821 tctcacgttc atattcttgc ttatgatatt ctgttttttg tttatactga cttatttgct
     2881 catgtttagc atttgttact tgtcttgatt gcccacgttc taaatcatat cctcgttgtt
     2941 taacatgctc attaaatcta tcttgaaacg ctgttaaagc ttttttatta cctacaactt
     3001 ctttagcact taaacgacca tcatcagtta ttggaacaac gccataatgc atatgtggtg
     3061 ttttttcgtc catgtgaact gttgcatata ataaattatc tttaccgtat tcttgttcta
     3121 aaaactcttt agcatattca aaaaactgct ttgtatcttc tggcgtttga ttatcaaaga
     3181 aatcattgtc tgatgtaatt aaaccatcaa tgtgtttaat cgcgtctgtt ctaatttttc
     3241 ttttgcctgt ataattctgt tcgatttttt catcaatcaa gttattaaaa ttctgtttat
     3301 tagcatttac caaatcataa tttaagtaag ttttactatg gtctatatct tcattttcat
     3361 aattattatt ttctctttga acatgttttt gtatgcccgt tgtatttgtt ccagatttaa
     3421 cttttgaaac tctaacaatg gaataagaca tataaaaatc actcctaagc acaaaggttt
     3481 catgtgtatt taatagttta agtctaatac actagactta tttttaataa gtcgttaata
     3541 cgtgtgctct gcgaggctta aacctgtttt tgctaacgca aaaaatgagt ggcaaaatgc
     3601 tagccactca tagttctaaa ccaaaatata atataactat tcaaactgct tttcagaacg
     3661 tttaaataca ataatcgtca aaagacaaca taaaataata aggatagcca tggctacaag
     3721 aatattacta tacactccag aagaataatt tataaattcc agaactagtt tacgattaat
     3781 caattgtagt gacaataaac ctcctacaat tgctatacct gttccctctg ataaaaaact
     3841 tgtgaaattt agcaaactca ttccagaagc aacttcttct tcagaaagac tacttgatac
     3901 tatttttgat ataactgttt tagtaaaaga taatccgccc ataacaaata taaacataaa
     3961 agtagtcaac cacatactaa actcaacaaa aaatgcaata gttaaaaaac ttatagagat
     4021 agacaatgat cctaaaataa aaacaaataa tgatcctttt ctatccacta aaaaaccacc
     4081 aaaataacca aaaacaataa cactcatggt tccaggaaaa ataacactat tacctattgt
     4141 cgctacattt acatgataaa tagttttcat catataaggc accattgata taaaaccagc
     4201 tactatagaa aatattagcc caccagaaaa caaaccaagc ataaacggaa tgtttttccc
     4261 tagtttagga ttaataaaag ggttagaaac tcttgaaata tgtttaataa aaatcacaaa
     4321 aaagattgtg aagagtatta aaaaagtcca attataattt gtcgtaaata acataaaaca
     4381 tataatactt atagacatta aaacaatacc tacgatatct aatgtatttt ttgttgatt
//
