LOCUS       NZ_CP050430             2762 bp    DNA     circular CON 09-JAN-2024
DEFINITION  Acinetobacter baumannii strain PM194188 plasmid pPM194122_5,
            complete sequence.
ACCESSION   NZ_CP050430
VERSION     NZ_CP050430.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14420255
            Assembly: GCF_012935105.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2762)
  AUTHORS   Veeraraghavan,B., Vijayakumar,S., Mathur,P., Amala,A., Francis,L.
            and Kirubananthan,A.
  TITLE     Complete genome sequencing for A.baumanii
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2762)
  AUTHORS   Veeraraghavan,B., Vijayakumar,S., Mathur,P., Amala,A., Francis,L.
            and Kirubananthan,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2020) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. 1.7; Unicycler v. 0.4.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 157.1399209x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/09/2024 04:12:13
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,121
            CDSs (total)                      :: 4,025
            Genes (coding)                    :: 3,881
            CDSs (with protein)               :: 3,881
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 6, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 7 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 144
            CDSs (without protein)            :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 38 of 144
            Pseudo Genes (incomplete)         :: 102 of 144
            Pseudo Genes (internal stop)      :: 17 of 144
            Pseudo Genes (multiple problems)  :: 10 of 144
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP050430.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2762
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="PM194188"
                     /isolation_source="BAL"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pPM194122_5"
                     /geo_loc_name="India"
                     /lat_lon="28.5659 N 77.2111 E"
                     /collection_date="2019"
                     /collected_by="AIIMS Jai Prakash Narayan Apex Trauma
                     Center"
     gene            complement(495..977)
                     /locus_tag="HB368_RS20605"
                     /old_locus_tag="HB368_20605"
     CDS             complement(495..977)
                     /locus_tag="HB368_RS20605"
                     /old_locus_tag="HB368_20605"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_163071732.1"
                     /translation="MADIPDAILSSYNGAVEVLQAGNYSQAQILGFFNVLQKTYVQLKS
                     NKSTSLDETIENIEESIPFLAALLPSLNNKSELYTFIGLLLQFFSMFIGNQPQTVNNFN
                     APVVIINESEQKAPARPSMECIQPIPKKSTGMCACGSGLVSQLCCNNSVKSNLKTI"
                     /name="hypothetical protein"
     gene            complement(<1784..2713)
                     /gene="repM"
                     /locus_tag="HB368_RS20610"
                     /old_locus_tag="HB368_20610"
                     /pseudo=""
     CDS             complement(<1784..2713)
                     /gene="repM"
                     /locus_tag="HB368_RS20610"
                     /old_locus_tag="HB368_20610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871874.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein RepM"
                     /name="repM"
ORIGIN
        1 gtgtctttat gcaaggaatc tgtgtcgtta taacaaggaa tctgtgtcgt tataacaagg
       61 aatctgtgtc gttataacaa ggaatctgtg tcgttattag ccttaaaact tagttatatc
      121 aatgctttca gagggcgtaa aagcatttaa aaactttaaa atatatataa aagcctaaac
      181 aggcatgaaa aacagcccta tgccctcgct tatgctcgga cgttttaacc tcgcttacgc
      241 tcggttgagg ggctgttttt tacaaaggcc ggtcgaaaat tcgatgaaaa gaactacgcc
      301 ttcgcttcgc tcagaaagct ttatgctcgc ttcgctcggt ctagattcaa tttaagtctg
      361 ttcgcaccca ttcgggatgc tctgtactta ccctggagaa tcaaaaggga gcttgtaatc
      421 agggaaaagt aagggcgaaa ttttttataa cgctcaatcg ctcgtagaca ctcgctcggt
      481 tttttaaaag tgtttcatat agtttttaag tttgatttta ctgagttatt gcaacataac
      541 tgactgacta aaccagatcc acaagcacac atacctgtag attttttagg aataggttga
      601 atgcattcca tacttggtct agcaggtgct ttttgttctg attcattaat gattactact
      661 ggagcattaa agttatttac agtctgaggt tgattaccaa taaacatgct aaagaactga
      721 agcaataaac caataaatgt ataaagctca cttttattat taagtgacgg taataatgca
      781 gctaaaaatg gaatagattc ttcaatgttt tcaattgttt catctaatga tgtcgactta
      841 ttagatttta attgaacata tgttttctgc agaacattaa aaaaacctag gatttgcgct
      901 tgtgaataat tacccgcttg tagtacctca acagcaccgt tataagaact taaaatagcg
      961 tcaggaatgt ctgccatgcg accacaacga ggacactgag acttatttcc acgcaaagtt
     1021 atgtttgtga catccccaat aacaatacct gaagggaaga ccaaaccaca tgagcataca
     1081 gcagggatat ttaacatgtt ttttaataaa ttaatttaaa aaaatataat tacttaggta
     1141 gaaaaattaa gcaatttttt atgacactta attctgaatt tcttatccca catattttaa
     1201 aaacagtatt tttttgagtc tatttcttca ggtgtaacta atttaggctc tgaatggctc
     1261 tatttttcgc ttgttgatga tttcagcccc atctaggtat gtttccctgt tttttggaaa
     1321 aaagggctta aatgcgattt taggcgcttg gatggagtgc atgagaatct aatattccaa
     1381 aagttgccga tcggcaactt ttgatggttt tgagggttaa tcattttccg acagcagaag
     1441 ggaatgcacg cttacgcgtt tctcttcgag aaacaaaaaa tggacctttg gaaaagataa
     1501 aaataagccc caaattttgg ggcgttttga aatcttttct aaaggagaaa acttaaggat
     1561 tagcttttag gtagtcataa aattgaattt gctgttttgg gtcttttaac atgatgcgaa
     1621 gtttttgcat gaagtcatca ggcgattcgt cttcttgttt caagtgagca aattttttat
     1681 gcctggacat gccataagaa attcgattga tctgcatatc agataaatct aaaaacttag
     1741 gttcatcgac ctgtttttgt atcggttgtt gttttttaga attaaaaccg agctgttcca
     1801 gcaatggata aaacattttg attttttttg gttctaaaag catatctgca agacgtttaa
     1861 caaagtcttc agatgattcc ccaatctttg catattcgct cccaacttca ggtagtacag
     1921 atagcttttg agcaaataaa tatctttgag catctgtcat ctcaatgaaa aagtcagggg
     1981 tattagggtc tctttttatc tctgtttgct tagtaatttt tagaggattc ttttgcttaa
     2041 atttgaagga aaagccagta atagtacgtc cagttttatg ttgatcataa cttactgtaa
     2101 tgtccgtatg ctcgttaatt tgtttgatag atggttctag tacacggctt ttgaagtgat
     2161 tcattgcttt atattcatta gctgcaatac ctagcctttc tctaaattcg gcgagatcaa
     2221 tcttaggcac tttgccaact tcacgccatg cgattaaaac ttcatacaag cggatagcgt
     2281 atttactggt gagctgtgaa acctgtttta actggtagct agtgaaatgt tgttcaagcc
     2341 ttgtgattaa tggaacaaca tcaggggcaa aagtgatttc taatagacct gaatcatcaa
     2401 tatatttgat tctacttacc caacgagatc ggactacacc aacccctttt tttgtagttt
     2461 ctttgaagga gaactggcgt tcaaacaaat tattaaccgc attttttaat gcttcataag
     2521 cggtttcctt cttcacatta aactgattgg catagtcatt agcatgtatc tctaacttgc
     2581 tatctgacgt aattccttgc tgtgtttcac gtgcattgat aattgctaaa agtattagac
     2641 gttgctctgt tacttctaaa ttataactag cattcatcaa ggcattatct ttcactacta
     2701 atccattctt catattagac acgttatata attatgtgca taaagacaca ttataacact
     2761 gt
//
