LOCUS       NZ_CP050420             2762 bp    DNA     circular CON 11-JAN-2024
DEFINITION  Acinetobacter baumannii strain PM193665 plasmid pPM193665_5,
            complete sequence.
ACCESSION   NZ_CP050420
VERSION     NZ_CP050420.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14420254
            Assembly: GCF_012935085.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2762)
  AUTHORS   Veeraraghavan,B., Vijayakumar,S., Amala,A., Francis,L. and
            Kirubananthan,A.
  TITLE     Complete genome sequencing for A.baumanii
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2762)
  AUTHORS   Veeraraghavan,B., Vijayakumar,S., Amala,A., Francis,L. and
            Kirubananthan,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2020) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. 1.7; Unicycler v. 0.4.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 180.6371398x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/11/2024 05:19:43
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,105
            CDSs (total)                      :: 4,010
            Genes (coding)                    :: 3,871
            CDSs (with protein)               :: 3,871
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 139
            CDSs (without protein)            :: 139
            Pseudo Genes (ambiguous residues) :: 0 of 139
            Pseudo Genes (frameshifted)       :: 39 of 139
            Pseudo Genes (incomplete)         :: 94 of 139
            Pseudo Genes (internal stop)      :: 18 of 139
            Pseudo Genes (multiple problems)  :: 9 of 139
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP050420.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2762
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="PM193665"
                     /isolation_source="Pus"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pPM193665_5"
                     /geo_loc_name="India"
                     /lat_lon="28.5659 N 77.2111 E"
                     /collection_date="2019"
                     /collected_by="AIIMS Jai Prakash Narayan Apex Trauma
                     Center"
     gene            complement(300..782)
                     /locus_tag="HB367_RS20540"
                     /old_locus_tag="HB367_20535"
     CDS             complement(300..782)
                     /locus_tag="HB367_RS20540"
                     /old_locus_tag="HB367_20535"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_163071732.1"
                     /translation="MADIPDAILSSYNGAVEVLQAGNYSQAQILGFFNVLQKTYVQLKS
                     NKSTSLDETIENIEESIPFLAALLPSLNNKSELYTFIGLLLQFFSMFIGNQPQTVNNFN
                     APVVIINESEQKAPARPSMECIQPIPKKSTGMCACGSGLVSQLCCNNSVKSNLKTI"
                     /name="hypothetical protein"
     gene            complement(<1589..2518)
                     /gene="repM"
                     /locus_tag="HB367_RS20545"
                     /old_locus_tag="HB367_20540"
                     /pseudo=""
     CDS             complement(<1589..2518)
                     /gene="repM"
                     /locus_tag="HB367_RS20545"
                     /old_locus_tag="HB367_20540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871874.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein RepM"
                     /name="repM"
ORIGIN
        1 ccctatgccc tcgcttatgc tcggacgttt taacctcgct tacgctcggt tgaggggctg
       61 ttttttacaa aggccggtcg aaaattcgat gaaaagaact acgccttcgc ttcgctcaga
      121 aagctttatg ctcgcttcgc tcggtctaga ttcaatttaa gtctgttcgc acccattcgg
      181 gatgctctgt acttaccctg gagaatcaaa agggagcttg taatcaggga aaagtaaggg
      241 cgaaattttt tataacgctc aatcgctcgt agacactcgc tcggtttttt aaaagtgttt
      301 catatagttt ttaagtttga ttttactgag ttattgcaac ataactgact gactaaacca
      361 gatccacaag cacacatacc tgtagatttt ttaggaatag gttgaatgca ttccatactt
      421 ggtctagcag gtgctttttg ttctgattca ttaatgatta ctactggagc attaaagtta
      481 tttacagtct gaggttgatt accaataaac atgctaaaga actgaagcaa taaaccaata
      541 aatgtataaa gctcactttt attattaagt gacggtaata atgcagctaa aaatggaata
      601 gattcttcaa tgttttcaat tgtttcatct aatgatgtcg acttattaga ttttaattga
      661 acatatgttt tctgcagaac attaaaaaaa cctaggattt gcgcttgtga ataattaccc
      721 gcttgtagta cctcaacagc accgttataa gaacttaaaa tagcgtcagg aatgtctgcc
      781 atgcgaccac aacgaggaca ctgagactta tttccacgca aagttatgtt tgtgacatcc
      841 ccaataacaa tacctgaagg gaagaccaaa ccacatgagc atacagcagg gatatttaac
      901 atgtttttta ataaattaat ttaaaaaaat ataattactt aggtagaaaa attaagcaat
      961 tttttatgac acttaattct gaatttctta tcccacatat tttaaaaaca gtattttttt
     1021 gagtctattt cttcaggtgt aactaattta ggctctgaat ggctctattt ttcgcttgtt
     1081 gatgatttca gccccatcta ggtatgtttc cctgtttttt ggaaaaaagg gcttaaatgc
     1141 gattttaggc gcttggatgg agtgcatgag aatctaatat tccaaaagtt gccgatcggc
     1201 aacttttgat ggttttgagg gttaatcatt ttccgacagc agaagggaat gcacgcttac
     1261 gcgtttctct tcgagaaaca aaaaatggac ctttggaaaa gataaaaata agccccaaat
     1321 tttggggcgt tttgaaatct tttctaaagg agaaaactta aggattagct tttaggtagt
     1381 cataaaattg aatttgctgt tttgggtctt ttaacatgat gcgaagtttt tgcatgaagt
     1441 catcaggcga ttcgtcttct tgtttcaagt gagcaaattt tttatgcctg gacatgccat
     1501 aagaaattcg attgatctgc atatcagata aatctaaaaa cttaggttca tcgacctgtt
     1561 tttgtatcgg ttgttgtttt ttagaattaa aaccgagctg ttccagcaat ggataaaaca
     1621 ttttgatttt ttttggttct aaaagcatat ctgcaagacg tttaacaaag tcttcagatg
     1681 attccccaat ctttgcatat tcgctcccaa cttcaggtag tacagatagc ttttgagcaa
     1741 ataaatatct ttgagcatct gtcatctcaa tgaaaaagtc aggggtatta gggtctcttt
     1801 ttatctctgt ttgcttagta atttttagag gattcttttg cttaaatttg aaggaaaagc
     1861 cagtaatagt acgtccagtt ttatgttgat cataacttac tgtaatgtcc gtatgctcgt
     1921 taatttgttt gatagatggt tctagtacac ggcttttgaa gtgattcatt gctttatatt
     1981 cattagctgc aatacctagc ctttctctaa attcggcgag atcaatctta ggcactttgc
     2041 caacttcacg ccatgcgatt aaaacttcat acaagcggat agcgtattta ctggtgagct
     2101 gtgaaacctg ttttaactgg tagctagtga aatgttgttc aagccttgtg attaatggaa
     2161 caacatcagg ggcaaaagtg atttctaata gacctgaatc atcaatatat ttgattctac
     2221 ttacccaacg agatcggact acaccaaccc ctttttttgt agtttctttg aaggagaact
     2281 ggcgttcaaa caaattatta accgcatttt ttaatgcttc ataagcggtt tccttcttca
     2341 cattaaactg attggcatag tcattagcat gtatctctaa cttgctatct gacgtaattc
     2401 cttgctgtgt ttcacgtgca ttgataattg ctaaaagtat tagacgttgc tctgttactt
     2461 ctaaattata actagcattc atcaaggcat tatctttcac tactaatcca ttcttcatat
     2521 tagacacgtt atataattat gtgcataaag acacattata acactgtgtg tctttatgca
     2581 aggaatctgt gtcgttataa caaggaatct gtgtcgttat aacaaggaat ctgtgtcgtt
     2641 ataacaagga atctgtgtcg ttattagcct taaaacttag ttatatcaat gctttcagag
     2701 ggcgtaaaag catttaaaaa ctttaaaata tatataaaag cctaaacagg catgaaaaac
     2761 ag
//
