LOCUS       NZ_CP050409             2457 bp    DNA     circular CON 11-JAN-2024
DEFINITION  Acinetobacter baumannii strain VB2486 plasmid pVB2486_6, complete
            sequence.
ACCESSION   NZ_CP050409
VERSION     NZ_CP050409.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14414761
            Assembly: GCF_012935005.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2457)
  AUTHORS   Veeraraghavan,B., Vijayakumar,S., Amala,A., Francis,L. and
            Kirubananthan,A.
  TITLE     Complete genome sequencing for A.baumanii
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2457)
  AUTHORS   Veeraraghavan,B., Vijayakumar,S., Amala,A., Francis,L. and
            Kirubananthan,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAR-2020) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. 1.7; Unicycler v. 0.4.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 143.3824081x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/11/2024 05:10:12
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,177
            CDSs (total)                      :: 4,081
            Genes (coding)                    :: 3,974
            CDSs (with protein)               :: 3,974
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 107
            CDSs (without protein)            :: 107
            Pseudo Genes (ambiguous residues) :: 0 of 107
            Pseudo Genes (frameshifted)       :: 35 of 107
            Pseudo Genes (incomplete)         :: 72 of 107
            Pseudo Genes (internal stop)      :: 20 of 107
            Pseudo Genes (multiple problems)  :: 17 of 107
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP050409.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2457
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="VB2486"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pVB2486_6"
                     /geo_loc_name="India"
                     /lat_lon="12.9246 N 79.1348 E"
                     /collection_date="2019"
                     /collected_by="Christian Medical College"
     gene            join(1893..2457,1..875)
                     /locus_tag="HBN34_RS20775"
                     /old_locus_tag="HBN34_20775"
                     /pseudo=""
     CDS             join(1893..2457,1..875)
                     /locus_tag="HBN34_RS20775"
                     /old_locus_tag="HBN34_20775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003115284.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="rolling circle replication protein, Rep63
                     protein"
                     /name="rolling circle replication protein, Rep63 protein"
     gene            878..1285
                     /locus_tag="HBN34_RS20780"
                     /old_locus_tag="HBN34_20780"
     CDS             878..1285
                     /locus_tag="HBN34_RS20780"
                     /old_locus_tag="HBN34_20780"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000654270.1"
                     /translation="MKDMNDFIEVNKDIFDIEEHRIKMNVPPQAEFYGFTLVNPKNNQF
                     VSKLIVGQECTAIFMTPKQMKKSFIQDVFLCPILELTLNLSLFPEQILLPLAVYAYQDD
                     EDTRFIFAGFDDDELKKMIVGTSPRNRSMYS"
                     /name="hypothetical protein"
     gene            1615..1893
                     /locus_tag="HBN34_RS20785"
                     /old_locus_tag="HBN34_20785"
     CDS             1615..1893
                     /locus_tag="HBN34_RS20785"
                     /old_locus_tag="HBN34_20785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004929869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000442155.1"
                     /translation="MERRKRIALSVPPEMDEVLERLAVLTNQPKTKLILEMLEEYVPVL
                     EQTINALEQIQENKENAASIAKQFASEILLDGNQKLGQIAAEVKNLK"
                     /name="hypothetical protein"
ORIGIN
        1 attattctga ataccctgaa aattttatag gcccgattcg tcctacttgg gaatatatca
       61 aaggccatac ttacttaatt acccttacta attcacacaa tgcaggtcat tccctgttat
      121 ctcaacgtga ggggcagaaa aaggcaatga aacgcttttt tgagggtcgt aaagctgagg
      181 ctcttatggg tcgattaggt aaacgctttc acattacaaa ctatgaagtg acttttggta
      241 aaaacggttg gcatcctcac catcacattt tggttttttc agataaagca ttatcaattt
      301 cagaattttc agctctaaga aatgaattag cagaacattg gattaattgc tgtcgccttt
      361 caaaattacc acttcctaac atggaacatg gtttagacct tgcagatggc acttatgccg
      421 atcagtacat tgggaaatgg ggcgttgagc atgaaatgac taagggtcat atcaaaaaag
      481 gtaaagaggg tggtttaact ccctttgatc ttctccagtt gtcttttgaa gatgaattag
      541 tttttggacg taaaccaagt caattattta aagaatatgc agccgctttt aaaggtgctc
      601 gtcaattgat gtggtctaga ggtttaaaag acgtttttgg gcttcgtgat gtgtctgacg
      661 atgaaatcat ggacaaggtc acagaggatg caatcaagct caatgaagtt gaggatttag
      721 tctttagatt attagttaaa tataaaaaat atgtggaatt cctaattgca gttgaggaac
      781 aacaaaaagg cgtagctggt gctgtggatc tgctcgtcga tgaaattgta aggcaagaaa
      841 tagaactaat cgaaaatagg ttaaaagcga gttaattatg aaagatatga acgattttat
      901 tgaagtgaac aaagatattt tcgatattga agaacacaga ataaaaatga atgttccccc
      961 acaagctgaa ttttatgggt ttactcttgt gaatcctaaa aacaatcagt ttgtgtctaa
     1021 gttaattgtt ggtcaagaat gtactgctat ttttatgaca cctaaacaaa tgaaaaaatc
     1081 atttattcag gatgtctttt tatgcccaat tttagaactt actcttaatt tgtctttatt
     1141 ccctgaacaa attttattgc ctttagctgt ttatgcttat caagatgatg aagatacaag
     1201 atttatcttt gcaggatttg atgacgatga attaaagaaa atgattgtag gcacaagtcc
     1261 aagaaataga tcaatgtatt catgacaaca tgacaacatg acaacatgta aacaagctca
     1321 cttcggtggg cttttttggg tcttagggtg tccctaacaa ggtcacaggg tactatgtgt
     1381 atccttgctt aataaacacg agctgtgtcg gctgacgttc cgtgaacgta catgccgatc
     1441 agagcgagtg tctacgagcg aactgacata attagaatta caaaacttcc tttccctgat
     1501 tacaagctcc cttttgcctt tgatcggtaa gtaccaggct atgcctgccg aaaatatttg
     1561 cttatttttt atctatatgc gatattggtt accacactta ttttagggta actcatggaa
     1621 cgtagaaaac gtattgcttt aagtgttcct cctgaaatgg atgaagtttt ggagcgtttg
     1681 gcggttttaa ctaatcaacc aaaaaccaaa ttgattttgg aaatgttgga agaatacgtc
     1741 cctgtacttg agcagactat caatgctttg gagcagattc aggaaaataa agagaatgct
     1801 gcaagtatcg caaaacagtt tgctagtgaa attttattag atggtaacca aaagctaggg
     1861 cagatagctg ctgaggttaa aaaccttaaa taatgaaaaa gccccaagaa ctgcaattct
     1921 tagggctttg gaatcctgta gttgtacggc aacatttagg agtaattcta ttgtacggta
     1981 acaatgacgt atgtcaaagg gggggtgagg gcgtcgcgcg accgtgcgcg cttcctcgtg
     2041 caagtacgcg cgcgcctgcg cccctgccgt tttgcaaatt agtcacaaat ggttctggta
     2101 aagtatgggc tgtcgatgag aatgggaagc cccttggtat tattacgaaa tctcatccca
     2161 cccttgatac gcaaggcttt cagcgaattc aggattacgc attacaacaa caatcagcca
     2221 aacttttaca cggaaaaagt agggtctgtt tttgtggtaa acgtaagatt gataaaaata
     2281 gaaatagatc ggttgtctat aatccaaaca ctgaacgagc atattttgag aatgttcaaa
     2341 gatgcggttc tatctgggat tgcaaagtct gcgctaaaaa gatcactgaa acacgtagaa
     2401 aagaattagc ctttgccaat gagctttgga aatcaggcgt tgttttacag acttttg
//
