LOCUS       NZ_CP050397             1025 bp    DNA     circular CON 09-JAN-2024
DEFINITION  Acinetobacter baumannii strain VB11737 plasmid pVB11737_6, complete
            sequence.
ACCESSION   NZ_CP050397
VERSION     NZ_CP050397.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14410107
            Assembly: GCF_012934965.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 1025)
  AUTHORS   Veeraraghavan,B., Vijayakumar,S., Amala,A., Francis,L. and
            Kirubananthan,A.
  TITLE     Complete genome sequencing for A.baumanii
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1025)
  AUTHORS   Veeraraghavan,B., Vijayakumar,S., Amala,A., Francis,L. and
            Kirubananthan,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAR-2020) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. 1.7; Unicycler v. 0.4.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 72.7314339x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/09/2024 03:27:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,929
            CDSs (total)                      :: 3,834
            Genes (coding)                    :: 3,754
            CDSs (with protein)               :: 3,754
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 19 of 80
            Pseudo Genes (incomplete)         :: 48 of 80
            Pseudo Genes (internal stop)      :: 20 of 80
            Pseudo Genes (multiple problems)  :: 7 of 80
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP050397.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1025
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="VB11737"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pVB11737_6"
                     /geo_loc_name="India"
                     /lat_lon="12.9246 N 79.1348 E"
                     /collection_date="2019"
                     /collected_by="Christian Medical College"
     gene            join(616..1025,1..529)
                     /locus_tag="HBM80_RS00545"
                     /old_locus_tag="HBM80_00545"
     CDS             join(616..1025,1..529)
                     /locus_tag="HBM80_RS00545"
                     /old_locus_tag="HBM80_00545"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
                     /protein_id="WP_228722249.1"
                     /translation="MKLYISALQLENGELLLVVSPQFNANAIQDYALRWEIETLFSCLK
                     GRGFNLENTRLTDPRRVKKLIAVLAISFCWCYLTGEWQHDQKKAIKIKKHGRLSMSLFR
                     YGLDYVQMAIQRLIGFGKKEEFKEILAILRRQNLKWNKSHLKCFALIMLVIILKQTCNL
                     SSASKALPIKCLPQSFYRRMQRFFAGQYFDYRQISQLIFNMFSFDQVQLTLDRTNWKWG
                     KRNINILMLAIVYRGIAIPILWTLLNKRGNSDTKERIALIQRFIAIFGKDRIVNVFADR
                     EFIGEQWFTWLIEQDINFCIRVKKTSLSPII"
                     /name="IS4 family transposase"
ORIGIN
        1 tctaaaatgg aacaagtcac atttaaagtg ctttgcgctc atcatgcttg tgattatttt
       61 aaagcaaaca tgtaatcttt cttctgcatc taaagccttg cccatcaagt gcttaccaca
      121 atcattttat cgacgtatgc agcgcttctt tgcaggtcag tattttgatt atcgtcaaat
      181 ttctcagttg attttcaata tgttttcatt cgaccaagtg caactgactt tagatagaac
      241 caattggaaa tggggaaaac gaaatattaa tatcctgatg ctcgcaatcg tttatcgtgg
      301 aatagcgata cctatccttt ggacattgct taataaacgt ggaaattcag atacgaaaga
      361 gcgtattgct ttgattcaac gctttatagc catttttggt aaagaccgta ttgtgaatgt
      421 gttcgcagac agagagttta tcggtgagca gtggtttaca tggttaattg aacaagacat
      481 caacttctgc attcgtgtta aaaaaacttc attgtcacca atcatttagg aaagaatcat
      541 aaaattagtg atttatttcg ccatcttaaa gttggtcaaa ttgaatgtcg taaacgacgg
      601 attttggttg gtcgggtgaa actatatata agtgcactac agttagaaaa tggagagctt
      661 ttactcgtcg tttctcctca gtttaatgcc aatgctattc aggattatgc attacgctgg
      721 gaaattgaaa ccttattcag ttgtctcaaa ggacgcgggt ttaatcttga aaatacgcgc
      781 ttgacagacc ctagacgagt gaaaaaattg attgcggtgt tagctataag cttctgttgg
      841 tgttacttaa cgggtgaatg gcaacatgat caaaaaaaag cgataaaaat aaagaagcat
      901 ggacgactct caatgagttt atttcgctat ggtttagact atgttcaaat ggcgattcag
      961 cgtttaattg gttttgggaa aaaagaagag tttaaggaaa ttttggcaat tttaagaagg
     1021 cagaa
//
