LOCUS       NZ_CP050396             1359 bp    DNA     circular CON 09-JAN-2024
DEFINITION  Acinetobacter baumannii strain VB11737 plasmid pVB11737_5, complete
            sequence.
ACCESSION   NZ_CP050396
VERSION     NZ_CP050396.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14410107
            Assembly: GCF_012934965.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 1359)
  AUTHORS   Veeraraghavan,B., Vijayakumar,S., Amala,A., Francis,L. and
            Kirubananthan,A.
  TITLE     Complete genome sequencing for A.baumanii
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1359)
  AUTHORS   Veeraraghavan,B., Vijayakumar,S., Amala,A., Francis,L. and
            Kirubananthan,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAR-2020) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. 1.7; Unicycler v. 0.4.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 72.7314339x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/09/2024 03:27:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,929
            CDSs (total)                      :: 3,834
            Genes (coding)                    :: 3,754
            CDSs (with protein)               :: 3,754
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 19 of 80
            Pseudo Genes (incomplete)         :: 48 of 80
            Pseudo Genes (internal stop)      :: 20 of 80
            Pseudo Genes (multiple problems)  :: 7 of 80
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP050396.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1359
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="VB11737"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pVB11737_5"
                     /geo_loc_name="India"
                     /lat_lon="12.9246 N 79.1348 E"
                     /collection_date="2019"
                     /collected_by="Christian Medical College"
     gene            20..835
                     /gene="sul2"
                     /locus_tag="HBM80_RS00535"
                     /old_locus_tag="HBM80_00535"
     ARG             21..832
                     /name="sul2"
                     /gene="sul2"
                     /gene_name="sulfonamide-resistant dihydropteroate synthase
                     Sul2"
                     /tool="amrfinderplus"
                     /drug_class="SULFONAMIDE"
                     /identity="100.0"
                     /coverage="100.0"
     gene            922..>1164
                     /gene="glmM"
                     /locus_tag="HBM80_RS00540"
                     /old_locus_tag="HBM80_00540"
                     /pseudo=""
     CDS             922..>1164
                     /gene="glmM"
                     /locus_tag="HBM80_RS00540"
                     /old_locus_tag="HBM80_00540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008891390.1"
                     /note="catalyzes the conversion of glucosamine-6-phosphate
                     to glucosamine-1-phosphate; incomplete; partial in the
                     middle of a contig; missing C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /name="glmM"
ORIGIN
        1 tattattata gaagccccca tgaataaatc gctcatcatt ttcggcatcg tcaacataac
       61 ctcggacagt ttctccgatg gaggccggta tctggcgcca gacgcagcca ttgcgcaggc
      121 gcgtaagctg atggccgagg gggcagatgt gatcgacctc ggtccggcat ccagcaatcc
      181 cgacgccgcg cctgtttcgt ccgacacaga aatcgcgcgt atcgcgccgg tgctggacgc
      241 gctcaaggca gatggcattc ccgtctcgct cgacagttat caacccgcga cgcaagccta
      301 tgccttgtcg cgtggtgtgg cctatctcaa tgatattcgc ggttttccag acgctgcgtt
      361 ctatccgcaa ttggcgaaat catctgccaa actcgtcgtt atgcattcgg tgcaagacgg
      421 gcaggcagat cggcgcgagg cacccgctgg cgacatcatg gatcacattg cggcgttctt
      481 tgacgcgcgc atcgcggcgc tgacgggtgc cggtatcaaa cgcaaccgcc ttgtccttga
      541 tcccggcatg gggttttttc tgggggctgc tcccgaaacc tcgctctcgg tgctggcgcg
      601 gttcgatgaa ttgcggctgc gcttcgattt gccggtgctt ctgtctgttt cgcgcaaatc
      661 ctttctgcgc gcgctcacag gccgtggtcc gggggatgtc ggggccgcga cactcgctgc
      721 agagcttgcc gccgccgcag gtggagctga cttcatccgc acacacgagc cgcgcccctt
      781 gcgcgacggg ctggcggtat tggcggcgct gaaagaaacc gcaagaattc gttaactgca
      841 cattcgggat atttctctat attcgcggtt cagcaggcat gtcccctttg agggcgaccc
      901 gacgacagga taatcgacct tatggtgcgc aaatatttcg gcacagacgg tattcgtggc
      961 aaagccaacg aaggcgcgat gacggcggaa accgccttgc gcgtcggcat ggcggctggc
     1021 cgtgtctttc gtcgcggtga ccaccgccat cgtgtcgtga tcggcaagga tacgcgcctg
     1081 tcgggctata tgcttgaacc cgcgctcaca gccggtttca cctcgatggg catggacgta
     1141 ttcctttttg gcccgctgcc gacaacgtat aggaagaata aacgcccttt tcacccaagt
     1201 ccaacagctt tggaccgcag ttgactcttt cgacacccct gcgatgcaac ccaatccggc
     1261 tgacggggag ccagcaacgc tgaaaattta ccctcctctt tcccactagc ggctcctttt
     1321 ccgacaacca gcacggcgga tccctgccgc ggcgctgtg
//
