LOCUS       NZ_CP050395             2673 bp    DNA     circular CON 09-JAN-2024
DEFINITION  Acinetobacter baumannii strain VB11737 plasmid pVB11737_4, complete
            sequence.
ACCESSION   NZ_CP050395
VERSION     NZ_CP050395.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14410107
            Assembly: GCF_012934965.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2673)
  AUTHORS   Veeraraghavan,B., Vijayakumar,S., Amala,A., Francis,L. and
            Kirubananthan,A.
  TITLE     Complete genome sequencing for A.baumanii
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2673)
  AUTHORS   Veeraraghavan,B., Vijayakumar,S., Amala,A., Francis,L. and
            Kirubananthan,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAR-2020) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. 1.7; Unicycler v. 0.4.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 72.7314339x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/09/2024 03:27:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,929
            CDSs (total)                      :: 3,834
            Genes (coding)                    :: 3,754
            CDSs (with protein)               :: 3,754
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 19 of 80
            Pseudo Genes (incomplete)         :: 48 of 80
            Pseudo Genes (internal stop)      :: 20 of 80
            Pseudo Genes (multiple problems)  :: 7 of 80
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP050395.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2673
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="VB11737"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pVB11737_4"
                     /geo_loc_name="India"
                     /lat_lon="12.9246 N 79.1348 E"
                     /collection_date="2019"
                     /collected_by="Christian Medical College"
     gene            join(2384..2673,1..46)
                     /locus_tag="HBM80_RS00520"
                     /old_locus_tag="HBM80_00520"
     CDS             join(2384..2673,1..46)
                     /locus_tag="HBM80_RS00520"
                     /old_locus_tag="HBM80_00520"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_169062438.1"
                     /translation="MNTMLISPTLNVSCSENVLLKISSYFGVSHEQAYRKGVDSLLKLT
                     EMVIANNEHSEIIKLFLCDCHLRTSINLDDISDMPTQLIGDCLNVIVLRYALFAGMFLR
                     VLLLLWL"
                     /name="hypothetical protein"
     gene            37..1452
                     /locus_tag="HBM80_RS19675"
     CDS             37..1452
                     /locus_tag="HBM80_RS19675"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /GO_component="GO:0016020 - membrane [Evidence IEA]"
                     /GO_function="GO:0015103 - inorganic anion transmembrane
                     transporter activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
                     /protein_id="WP_228722248.1"
                     /translation="MALIPEAIAFSIIAGVDPKVGLYASFCIAVVIAFVGGRPGMISAA
                     TGAMALLMVTLVKEHGLQYLLAATILTGFIQILAGYLKLGALMRFVSKSVVIGFVNALA
                     ILIFMAQLPELTNVTWHVYAMTIGGLAVIYLFPYIPVIGKLLPSPLICIVLLTLFALFI
                     GLDVRTVGDMGQLPDTLPIFLLPDIPLNLETLAIILPYSLGLAAVGLLESMMTATIVDD
                     LTDTTSDKNRECKGQGVANVASGFLGGMAGCAMIGQSIINVKSGGRTRLSSFSAGVFLL
                     IMVVFISDWLKAIPMAALVAVMIMVSIGTFNWDSLRNIRQYPLSSNIVMIVTVVVVVAT
                     HNLAYGVLVGVLLSALFFANKIERYMAIQSVFDESESTRTYTVTGQVFFSSADKFTSAF
                     DFKEALSKVVIDVSQAHFWDVSAVAAVDKVVIKFRREGTEVELIGMNEASKTLVDKFGI
                     HDKPDALDRLNSH"
                     /name="SulP family inorganic anion transporter"
     gene            1465..2316
                     /locus_tag="HBM80_RS00525"
                     /old_locus_tag="HBM80_00525"
     CDS             1465..2316
                     /locus_tag="HBM80_RS00525"
                     /old_locus_tag="HBM80_00525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000034565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="WP_000034564.1"
                     /translation="MSKIIACIDGSLVTNTVCDYAAWFSDKLNSPIKLLHVIDKPKAKA
                     PQDLSGAIGLGSRETLLKELVELEERKGKIELEHGQILLREAKNYLLEKFSIDAQSFQR
                     HGSVLETIMGMEDDIRVLVMGKHGNETEHDSSKIGTHIENVVRALHKPVLITSAPFSPP
                     KSFLIAFDGSQTARKCVERIASSPLLKGLAVHLVYVGNPNSEMQNQLSWAKEQLESQGF
                     NITSNTLDGEVDKAIINYAEQHQIDLIVVGAYGHSKIRQFFIGSTTTKVITSANKPVLL
                     LR"
                     /name="universal stress protein"
ORIGIN
        1 attcgcgggg atgttcttgc gggtattgtt gttgctttgg ctctaattcc tgaagcaatt
       61 gctttctcca ttattgcagg cgttgatcct aaagtggggc tatatgcttc attctgtatt
      121 gctgttgtga ttgcttttgt gggcggtcgt cctggtatga tttctgctgc aactggtgct
      181 atggctttat taatggtcac actggttaaa gagcatggtc tgcaatattt attagcagcc
      241 acaattttga caggatttat tcaaatccta gcaggctatc taaaattagg agccttgatg
      301 cgttttgtat caaagtcagt cgttattggc tttgtaaatg ccttggctat tctaattttt
      361 atggctcaat tgcctgaact taccaacgtc acttggcatg tttatgcgat gacaatcggt
      421 ggtttagcgg ttatttatct atttccctat atcccagtga tagggaaact tttaccctct
      481 cccctcatct gtattgtcct acttacgctc tttgccttat tcattggttt agatgtaaga
      541 actgtcggtg atatggggca attgccggat acgcttccaa ttttcttgct tcctgatatt
      601 cctttaaatc ttgaaacttt agctattatt ttaccctatt cactaggttt ggcagccgtg
      661 ggtttacttg agtccatgat gaccgcaaca attgtcgacg atttaacaga taccaccagt
      721 gataaaaacc gagaatgtaa agggcaaggt gttgccaatg tcgcttcagg cttcttaggc
      781 ggaatggcag gctgtgccat gattggtcaa tccattatta atgtgaaatc tggtggacgt
      841 acccgtttat catcatttag tgcaggggtc tttctgttaa ttatggtggt gtttatcagt
      901 gactggctta aagccattcc aatggctgca ctggttgctg tcatgattat ggtatcaatt
      961 ggaacattta actgggattc tctacgcaat atccgccaat atcctctctc tagcaatatc
     1021 gtgatgatcg ttacagtcgt cgtagttgtt gccacacata acctggctta tggtgtatta
     1081 gtcggtgttc ttctttctgc attatttttt gccaataaaa ttgaacgcta tatggcgatt
     1141 caatctgtat ttgatgaatc agaaagcaca cgtacttata cggtaacagg tcaagtgttc
     1201 ttcagttcag cagataaatt tacttctgca tttgatttca aagaggcact ttcaaaagtg
     1261 gtgattgatg tcagtcaggc acacttctgg gatgtttctg cggttgctgc cgtagataaa
     1321 gtggtcatta agtttagacg tgaaggaaca gaagtcgaac ttattggaat gaatgaagct
     1381 agtaaaacat tagtcgataa gtttggtatc catgataagc cagatgcttt agatcgctta
     1441 aatagccact aagagggatt agttatgtca aaaattattg catgtattga tggatcatta
     1501 gtaacaaata ctgtgtgtga ttatgcagct tggtttagcg ataaacttaa ttcacctatt
     1561 aaactattgc atgtcattga taagccaaaa gcaaaagcac cacaagattt aagtggtgca
     1621 attggtctag gaagtcgaga aaccttgctc aaagaattgg ttgaactcga agaacgtaag
     1681 ggaaaaatcg agctagagca tggccagatt cttcttcggg aagcaaagaa ctatttattg
     1741 gagaagttct ctattgatgc tcaaagtttt caacgccatg gcagtgtttt agaaacaatc
     1801 atgggaatgg aagacgacat tagagttctt gttatgggta agcatgggaa tgaaaccgag
     1861 catgattcca gtaaaattgg aacccatatt gaaaatgttg ttcgtgccct tcataaaccc
     1921 gtattaataa cgtctgcacc atttagtcca cctaagtctt ttttaattgc ttttgatgga
     1981 agtcagactg caagaaaatg tgttgaacgc attgcgtcaa gtccattact taaaggtctt
     2041 gcagtacatt tggtttatgt cggaaatccg aatagtgaaa tgcaaaatca gctctcttgg
     2101 gcaaaagagc aacttgaatc acaaggtttt aatatcacct cgaatacgtt ggatggtgaa
     2161 gttgataagg caattatcaa ttacgctgaa cagcatcaaa tcgatttgat tgtggttggg
     2221 gcttatggtc attcaaagat acgtcaattt tttattggca gcaccaccac aaaagtgatc
     2281 acaagcgcta ataaaccagt cctgttacta cgataatttc atgaaggggt agaattttga
     2341 tctatccctt tatttttaat aagttataaa aggaatcata aatatgaata cgatgttaat
     2401 aagcccaact ctaaatgttt cttgttccga aaatgtgctg ttaaaaatat cctcatactt
     2461 tggtgtatct catgaacaag cttatcgaaa aggcgtagat tctcttttaa aattaacaga
     2521 gatggttata gcaaataatg aacattctga aattattaaa ctttttttgt gtgattgtca
     2581 tttaagaaca tctatcaatt tagatgatat atccgatatg cctactcaat tgataggcga
     2641 ttgccttaat gtgattgttc tacgttatgc att
//
