LOCUS       NZ_CP050394             3383 bp    DNA     circular CON 09-JAN-2024
DEFINITION  Acinetobacter baumannii strain VB11737 plasmid pVB11737_3, complete
            sequence.
ACCESSION   NZ_CP050394
VERSION     NZ_CP050394.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14410107
            Assembly: GCF_012934965.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 3383)
  AUTHORS   Veeraraghavan,B., Vijayakumar,S., Amala,A., Francis,L. and
            Kirubananthan,A.
  TITLE     Complete genome sequencing for A.baumanii
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3383)
  AUTHORS   Veeraraghavan,B., Vijayakumar,S., Amala,A., Francis,L. and
            Kirubananthan,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAR-2020) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. 1.7; Unicycler v. 0.4.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 72.7314339x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/09/2024 03:27:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,929
            CDSs (total)                      :: 3,834
            Genes (coding)                    :: 3,754
            CDSs (with protein)               :: 3,754
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 19 of 80
            Pseudo Genes (incomplete)         :: 48 of 80
            Pseudo Genes (internal stop)      :: 20 of 80
            Pseudo Genes (multiple problems)  :: 7 of 80
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP050394.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3383
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="VB11737"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pVB11737_3"
                     /geo_loc_name="India"
                     /lat_lon="12.9246 N 79.1348 E"
                     /collection_date="2019"
                     /collected_by="Christian Medical College"
     gene            complement(<1..501)
                     /locus_tag="HBM80_RS00505"
                     /old_locus_tag="HBM80_00505"
                     /pseudo=""
     CDS             complement(<1..501)
                     /locus_tag="HBM80_RS00505"
                     /old_locus_tag="HBM80_00505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016654430.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="TniB family NTP-binding protein"
                     /name="TniB family NTP-binding protein"
     gene            complement(506..2416)
                     /locus_tag="HBM80_RS00510"
                     /old_locus_tag="HBM80_00510"
     CDS             complement(506..2416)
                     /locus_tag="HBM80_RS00510"
                     /old_locus_tag="HBM80_00510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016654431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mu transposase C-terminal domain-containing
                     protein"
                     /protein_id="WP_000573060.1"
                     /translation="MIESNAVNIDRSRIILKPNVVVGYEGQPYKIVNVLNANDIVISSL
                     DSVRSLQVNARSLTIFNGGNTLTERLNKGDQDISNEAWQIALQRYEIIKPLIEYSTTEL
                     VENRANEYDVNRSTLWKWLKDYRENNSLMALIPKKRGWTTEKSRLSPQVSNIIKQAIND
                     EYLNAKKPSISKTIEIVKAECSRLQLEAPHENSIRRRIEALNDYQVTKARLGSKAAIDK
                     FKAAAGSFPNADYPLAYVQIDHTPLDIEIVDDEFREAIGKPHLTLAIDVFSRMIVGYYL
                     SLEAPSTTSVAMCIASCILSKKRKLIELDIDAEWQVEGIMDSVHTDNGPDFRTNHISKA
                     CLKYGIHWEYRPIGGARFGGHIERMLGIVNLEMHVLDGTTFSNVQQRGTYDSAKQACMT
                     LKELEYYIVYWITKVYHQKKHSALGTSPIVKWEEGVWGTKTTAGTGLKERVSDEDTLFI
                     DFLPEFEATIQRTGVQKDNLFYFADCLRQWVNSIDPEDNNRKRKRKFLFKRDPRDISQI
                     WFYEPYSNTYFKVPTAKREIPPISLFEYKQVQNYLKSERQDVQNQDEIYKAILHLRDQL
                     NQARSLTRKQRRSNQRKKENAKAITQLSEQNQSKKAVVSESLQTSDDLWSTPLTAFDDL
                     R"
                     /name="Mu transposase C-terminal domain-containing protein"
     gene            complement(2417..3127)
                     /locus_tag="HBM80_RS00515"
                     /old_locus_tag="HBM80_00515"
     CDS             complement(2417..3127)
                     /locus_tag="HBM80_RS00515"
                     /old_locus_tag="HBM80_00515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000736393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heteromeric transposase endonuclease subunit
                     TnsA"
                     /protein_id="WP_000736396.1"
                     /translation="MKKLSDEYLPVRKAQTVYGSISGNYAFRGEKTIWFESTLERDFIL
                     KQEFNNNVIDVIGQPVVIPYITELGNQSTYTPDFLVQFSSSNCDDFEDFPVPMLIEIKP
                     KKKLVEDWDKLKPKFRAAHRFAADKGWKFKIISETRLYDQYWENINFLKKFRRSHVGAV
                     DQQLLLDTLQELGQSTINQLPAHIFKDKTNVLKGIHQVWALVAKRMIACDLYCPLTAET
                     VIWVNQNDAFARNI"
                     /name="heteromeric transposase endonuclease subunit TnsA"
ORIGIN
        1 gggaagcaat ttggctgaac ctgtcagaca attatgaatt tcatcgataa tcaacatttt
       61 tgtttcatac ttacgcatca agtgtacggc ttgatttcgt aatttggctt caggatcact
      121 tgcccgaaat ggcacaaaga agtgatttaa aatattaata tagagttctt taacattggc
      181 ttttgctgga gcaagtatcg gtaaaactgg cttagttacg gacaataaat ccatgtcagc
      241 atcacttacg gtttttgtat aatactgtct agcaaactca tgaatgatag ttgttttgcc
      301 catattggag tcaccaacaa tcaacaagca ttcaggtctt aatttcctag ggcgattcaa
      361 aatatcggtc aatgtgttca tgatggtaat ggctttctta tagccaatcc atctatcagt
      421 aaataatgtc tcaatccgtt cactatcgct taattgcatg atttcaagta catgctctgc
      481 aagatgttca tatttttcca ttgcatcacc ttaaatcgtc aaatgcagtt aaaggagtac
      541 tccacaaatc atcacttgtc tgaagacttt cagaaactac agccttttta gactgattct
      601 gttcggaaag ctgagtaatg gcttttgcat tttccttttt tctttggttt gagcgacgtt
      661 gctttcgagt caagcttcta gcctgattaa gttgatcacg tagatgcaaa atcgccttgt
      721 aaatctcatc ctgattctga acatcctgac gttcactttt gagatagttc tgaacctgct
      781 tatattcaaa taagctaatc ggtggtatct ctcgctttgc ggtaggtact ttaaaatagg
      841 tattagaata tggctcataa aaccaaatct gtgaaatatc cctcggatca cgtttaaaca
      901 agaattttct tttgcgcttt cgattattgt cctctggatc aatagaatta acccattgtc
      961 ttaaacagtc ggcaaaatag aataagttat ctttttgcac ccctgtacgc tgaatagtcg
     1021 cttcaaattc aggtagaaaa tcaataaaca aggtatcttc atctgataca cgttctttca
     1081 aacctgtacc tgctgtcgtc ttcgtccccc aaacaccttc ttcccattta acgattgggg
     1141 atgttcctaa agcggaatgt ttcttctggt gataaacttt agtaatccaa tacacgatat
     1201 agtattcaag ctcttttaat gtcatacagg cttgtttagc ggaatcataa gtcccacgct
     1261 gctgtacatt tgaaaaagtt gtaccatcca agacatgcat ttcaagattg acgataccaa
     1321 gcatacgctc gatatgaccg ccaaatcttg ccccaccaat tggtcggtat tcccaatgaa
     1381 tcccatactt tagacaagct ttactgatgt gattggttct aaaatcgggg ccattatctg
     1441 tatgcaccga gtccataatc ccttcgacct gccattcagc atcaatatcg agttcgatca
     1501 acttacgttt ttttgacaaa atacaagatg cgatacacat cgccactgaa gtcgtacttg
     1561 gcgcttctag tgataggtaa taccctacga tcatccgact gaaaacatcg attgccaagg
     1621 ttaaatgagg ttttccaatc gcttctctaa actcgtcatc cacgatttca atatctagag
     1681 gtgtatgatc aatctgcaca tatgccaaag ggtaatcagc atttggaaat gaaccagcag
     1741 cagccttaaa tttatctatt gcagctttag atccaagacg tgctttcgtt acttggtaat
     1801 catttaaagc ctcgattctt ctacgaatag agttttcatg cggtgcttca agctgaagcc
     1861 gagaacactc tgcttttaca atttcaatcg ttttggaaat actgggtttc ttcgcattca
     1921 aatattcatc attgatagct tgtttaatga tattgctcac ttgaggtgac aaccttgatt
     1981 tttcagttgt ccaacctcgt tttttgggaa tcaatgccat tagagaatta ttttcccgat
     2041 aatctttaag ccatttccac aatgttgagc gattcacatc atattcattc gccctatttt
     2101 cgaccagttc agtcgttgaa tactcaatca aaggcttaat aatctcataa cgttgtaaag
     2161 caatctgcca agcttcatta ctaatatcct gatcaccctt attcaaacgc tcagttagcg
     2221 tatttccccc attaaaaatg gtcaaacttc tagcattgac ctgtagacta cgtaccgaat
     2281 caagacttga tataacaatg tcattggcat ttaaaacatt cacaatttta tagggttgcc
     2341 cctcataacc gacaaccaca ttgggtttta gaatgatacg actacgatcg atattgacag
     2401 cattagattc aatcatttag atattcctcg caaatgcatc attttggttc acccatatca
     2461 ctgtttcagc cgttaaaggg caatacaagt cacaagcaat catgcgcttt gccactaatg
     2521 cccaaacttg gtgaattcct tttaaaacat tggttttatc tttaaaaata tgggcaggta
     2581 attgattaat tgttgattga cctaactctt gtagggtatc gagtaatagt tgttgatcaa
     2641 cggcacctac atgagagcgt ctaaattttt ttaagaaatt aatattttcc caatactgat
     2701 catataatct tgtttcactg ataattttga acttccatcc tttatcagca gcaaaacgat
     2761 gggctgctct gaattttggt tttaacttat cccagtcctc aacaagcttt ttcttaggct
     2821 taatttcgat gagcattggt acaggaaaat cctcaaaatc atcacaattc gagcttgaaa
     2881 actgcactaa aaagtcagga gtgtaggttg attggttacc caattcagtg atgtagggga
     2941 taactacagg ttgaccgata acatcaatca cattgttatt aaattcttgc ttaagtatga
     3001 aatcacgctc aagggtcgat tcaaaccaaa tggttttctc acctctaaag gcataatttc
     3061 ccgaaatact cccataaaca gtttgagctt ttctaacagg taagtattcg tcactcaatt
     3121 ttttcataaa aaagtcacca ttcaggcact cgtgcctatt aatgtaattt tgcaagtcac
     3181 tcttatctat ttatgtaaat aatctaattt aattgtgtga aattagagtg acaacctatt
     3241 gattatctat aatgccactc tattctattg ctgtaaatga cacaagtgct tagttatttc
     3301 gtcaccaaat gatgttattc cgcgaaatat aatgaccctc ttgataaccc aagagggcat
     3361 tttttacgat aaagaagatt tag
//
