LOCUS       NZ_CP050377             1565 bp    DNA     circular CON 15-MAY-2024
DEFINITION  Klebsiella pneumoniae strain 51015 plasmid p51015, complete
            sequence.
ACCESSION   NZ_CP050377
VERSION     NZ_CP050377.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14421541
            Assembly: GCF_011769825.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1565)
  AUTHORS   Chudejova,K., Kraftova,L., Mattioni Marchetti,V., Hrabak,J.,
            Papagiannitsis,C.C. and Bitar,I.
  TITLE     Genetic Plurality of OXA/NDM-Encoding Features Characterized From
            Enterobacterales Recovered From Czech Hospitals
  JOURNAL   Front Microbiol 12, 641415 (2021)
   PUBMED   33633720
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1565)
  AUTHORS   Bitar,i.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAR-2020) Microbiology, Charles University in Prague,
            Alej Svobody 1655/76, Plzen 1 32300, Czech Republic
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: Microbial Assembly v. SMRT Link v.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 473.0x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011769825.1-RS_2024_05_15
            Annotation Date                   :: 05/15/2024 02:59:46
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,873
            CDSs (total)                      :: 5,749
            Genes (coding)                    :: 5,553
            CDSs (with protein)               :: 5,553
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 196
            CDSs (without protein)            :: 196
            Pseudo Genes (ambiguous residues) :: 0 of 196
            Pseudo Genes (frameshifted)       :: 82 of 196
            Pseudo Genes (incomplete)         :: 125 of 196
            Pseudo Genes (internal stop)      :: 32 of 196
            Pseudo Genes (multiple problems)  :: 37 of 196
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP050377.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1565
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="51015"
                     /isolation_source="Rectal swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p51015"
                     /geo_loc_name="Czech Republic: Prague"
                     /lat_lon="50.07 N 14.43 E"
                     /collection_date="2019-06"
                     /collected_by="Charles University in Prague"
     gene            664..1143
                     /locus_tag="HB813_RS26025"
                     /old_locus_tag="HB813_26030"
     CDS             664..1143
                     /locus_tag="HB813_RS26025"
                     /old_locus_tag="HB813_26030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001620079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_000275450.1"
                     /translation="MYIGTEEQRKKRLKELEKLNKESESDPKNNGPFTQVYQKGWERIR
                     ELSKDKQGVVAIPLYSFLAEHIDPSCGAVVADQQFLADKLGVSRSTIKRWLNYLESKNA
                     LVRIPVAGKVCAYALDPHEVWKGYNTSKNYAAFVTKTLVNKDGDIQRRIMAMFSN"
                     /name="helix-turn-helix domain-containing protein"
     Typing          204..284
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.341"
                     /coverage="87.0"
                     /evalue="2.0600000000000002e-29"
     Typing          complement(2..89)
                     /name="Col(MG828)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.506"
                     /coverage="100.0"
                     /evalue="1.22e-31"
ORIGIN
        1 tctgagagct tctgagcgcg tttgaagggc tatctgacga cttatccccg aaagaacaac
       61 agcggaatca ccgacaacat gcgagaggtg gcaccgctcg ccgcagcccc agcgaccgaa
      121 cgttagtgag cgagtgggcg aggaagcgga agagaaccgg aaaccacatt gagcacgtac
      181 gcactgatgc ggggtgtcgg ggcgaagccc tgaccagatg gcaaacggaa tatcgtcgcg
      241 ggtgacggta ttacatttgc acatcctgtc ccgatttctg aggcgtttta gcggtgaacg
      301 gacggcaaaa ccatgatgga gctgttgaac gttgagagcg tgaaatctgg caaaaatcac
      361 agctggtaag gcttgcagag gagtaagcca gtatacactc cgctatcgct acgtgactgg
      421 gtcagggctt cgccccgaca ccccaaaaaa gtgttccgct ttgcgcaaca ctttcagcag
      481 aaaagatatt taagggcgat tttgtaagtt attgattttt tagctacttg cattatgggt
      541 tagctcacgc atgtgtggtc taaggttagc tcacgcatgt gtgagctagg tcgacctatc
      601 atggtttacg tttgagctat gatggcttat atttgagcca tcattagacc gtggagattt
      661 accatgtata tcgggactga agagcagcga aaaaagcgtc taaaagaact ggaaaaatta
      721 aacaaagaat cggaatcaga tccgaaaaat aacggcccat tcacccaggt ttatcagaag
      781 ggctgggaaa ggatccgaga actgtcgaag gacaagcagg gagttgtagc aataccgctt
      841 tactcgtttt tagctgagca catagatccc tcatgcggtg ctgttgttgc cgatcagcag
      901 tttttagcag ataaattggg tgttagccga agcacaatta agcgctggct caactactta
      961 gaatcaaaaa acgcgttagt cagaattcct gttgctggta aggtttgtgc gtatgcactc
     1021 gatccacatg aagtctggaa gggatacaac acatctaaaa actacgcggc gtttgtcact
     1081 aaaacactgg tcaacaaaga cggtgatatt cagcgccgaa tcatggccat gttttcaaat
     1141 tgagccagcg gcaggcacag gcaaaaaccc cgtttttgga caatctgatt caaatgttaa
     1201 catttgacat cgggttgtct atcctgcatt gctcttttgc cgcctcaaaa tcccttgcgt
     1261 gtttttgctc cccgatctcc agaacgatcg agccgccacg gttccggcag cgccttgagc
     1321 gcaaccggaa accgtctggg gagaacccca gacccccatc gctgtaacac cgacggtcta
     1381 cgaccaccta ccaaccgagt ggctgcctgt accgtgcaaa tgggctttgc agggggctga
     1441 cgcggttcct ggcgacctga aagcccctgg ctaggggtat cggcgcgcct gacctcctga
     1501 aacgctctgt aagcgttttt cgcgccttcc atgccctgac gggcatttaa accccgtttc
     1561 gtgcg
//
