LOCUS       NZ_CP050370             2056 bp    DNA     circular CON 16-MAY-2024
DEFINITION  Klebsiella pneumoniae strain 47733 plasmid p47733_COL_PVC, complete
            sequence.
ACCESSION   NZ_CP050370
VERSION     NZ_CP050370.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14421539
            Assembly: GCF_011769725.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2056)
  AUTHORS   Chudejova,K., Kraftova,L., Mattioni Marchetti,V., Hrabak,J.,
            Papagiannitsis,C.C. and Bitar,I.
  TITLE     Genetic Plurality of OXA/NDM-Encoding Features Characterized From
            Enterobacterales Recovered From Czech Hospitals
  JOURNAL   Front Microbiol 12, 641415 (2021)
   PUBMED   33633720
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2056)
  AUTHORS   Bitar,i.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAR-2020) Microbiology, Charles University in Prague,
            Alej Svobody 1655/76, Plzen 1 32300, Czech Republic
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: Microbila Assembly v. SMRTL Link v.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 500.0x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011769725.1-RS_2024_05_16
            Annotation Date                   :: 05/16/2024 02:52:29
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,842
            CDSs (total)                      :: 5,717
            Genes (coding)                    :: 5,542
            CDSs (with protein)               :: 5,542
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 175
            CDSs (without protein)            :: 175
            Pseudo Genes (ambiguous residues) :: 0 of 175
            Pseudo Genes (frameshifted)       :: 66 of 175
            Pseudo Genes (incomplete)         :: 113 of 175
            Pseudo Genes (internal stop)      :: 20 of 175
            Pseudo Genes (multiple problems)  :: 22 of 175
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP050370.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="47733"
                     /isolation_source="Rectal swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p47733_COL_PVC"
                     /geo_loc_name="Czech Republic: Prague"
                     /lat_lon="50.08 N 14.36 E"
                     /collection_date="2018-12"
                     /collected_by="Charles University in Prague"
     gene            join(2023..2056,1..956)
                     /locus_tag="HB636_RS29600"
                     /old_locus_tag="HB636_29615"
     CDS             join(2023..2056,1..956)
                     /locus_tag="HB636_RS29600"
                     /old_locus_tag="HB636_29615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_023569045.1"
                     /translation="MKNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIGELGDTLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVKHARWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESE"
                     /name="protein rep"
     gene            1509..1700
                     /locus_tag="HB636_RS29605"
                     /old_locus_tag="HB636_29620"
     CDS             1509..1700
                     /locus_tag="HB636_RS29605"
                     /old_locus_tag="HB636_29620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_020324555.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     Typing          complement(685..874)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="97.906"
                     /coverage="99.0"
                     /evalue="1.72e-88"
ORIGIN
        1 attccccctc agatgcgccc tgggacgctc acagaagcgt ttctgacgac gtgggaggga
       61 tttacctgct tgcggccgaa tatgagcgct acggggcgcg tatggcctcc tgcggcggtt
      121 tactgcgttt cgggtggtct accctcaaag aaaccggaga aacgcgcctg aggctgcgtg
      181 aggcgcattt ctgccgtgtc cggcactgtc ctgtctgcca gtggaggcgc tccctgatgt
      241 ggcaagcccg tttctaccag tccctgccgc gtatcgtggc ggattacccc gattcccgct
      301 ggatgttcct gaccctgacc gtgcgcaact gtgcgatcgg ggagctgggc gatacgctga
      361 gccggatgaa cacggctttc cagcggctga aggatcgcaa agagttcaga ccagttcagg
      421 gatggatccg caccacggaa gtcacccgcg gcagtgacgg cagcgcacac ccgcacttcc
      481 acacactgat gatggttccg cctggcatgc ttaacgggaa gagttacgtc aaacatgcgc
      541 gctgggttga gctgtggcgg gagtgccttc gggtcagcta cgatccgaat gtcgatgtcc
      601 gggcagtgaa accccggaag ccgaaggacg gcgaatcgct ggcctgcgcg accgccgaac
      661 tggtgcgcgg cgcggtggcc gagaccctga aatattccac gaagccggcc gacatggtcg
      721 ccgatcctga atggttcctc gaactgaccc gccagacgca caagcgccgc tttgtggcga
      781 ccggcggcgc actcaaagac gtattgaaac tcgatcagga aaccgacgcc gacatggtga
      841 tcggggatga tatttccgag ggcgacgatg acggttcacg catcgcgttc gagtggaaaa
      901 ccgaggtcag aaaataccgt cgctcaccaa cgaaagataa aaccgaatca gagtaacggg
      961 gtgtcggggc tgcgccctga ccatgaggac tttgggcatc cgtcaccttg gtggcggtgt
     1021 accaaagtca catcttgtcc gattgatttt actccgatgc aggatagggc tgccgccgca
     1081 aagtgacgtc actcgattgc tgagttcgga ttccgaacct gggttttcct tccggtaatt
     1141 ttccggaagg cgcgcttagt agtttctccc cttcggtgag aaactgcgcg gtggggcaag
     1201 cccacgaaaa acaaaaactg acaccggaca agatgtgttt ttggagtacc gccatcacga
     1261 tgtcggtacc aaaaacgatc cgtcagggct gcgccccgac accctgccaa cacctcacgc
     1321 cgccagatta aaatctgtca gcgttcgccg ttcccgaaat cgtcaaacgc taaatcgcgg
     1381 ggtcccgctg gcttgccagt gggttccgat ttagtgattg acgacagcac ccgtagaata
     1441 cttacagggg gtggttgtga tcacgcagtg agcgcaacca cctgataggc gtttttgagg
     1501 gggtaggtat gatcgtcaga ctggataacc ggctgtttga gattctcgat gagatgggtg
     1561 cgcatgtgga tcgggaaatg ttcatggcgg cctatgcaca gcggaaggcc gaaaaggaaa
     1621 atgatccccg gcatatccgt cagcggaaat tgaccaggtt ggctcatgat ttgatgtcag
     1681 aatcggaccc tgaattgtga gcctcgcgtg cgcgcgaggg aaattggtca gaaaatcgcc
     1741 ggattttcat gcgcgcgatc cttgtattta tacttaaggg ataactctgg cgttaaaaat
     1801 aagcctcagc ccttgtgcct caagggtttc agcgtgattt gcctgaaaat gactttgaag
     1861 ttattctgtc gggagtggtc gcgttaaaag cgacccccgc aacgacggcc atcgttcggg
     1921 ggtgtgacca cctgtaggaa ttctattttg cgacagacaa cacaggtgat acggcaatga
     1981 taacacgtca aatgagccat cgcccagtat gggacggtgc gcatgaaaaa ccctgaactc
     2041 cagaacctca cggact
//
