LOCUS       NZ_CP049843             1822 bp    DNA     circular CON 07-SEP-2023
DEFINITION  Escherichia coli strain UPEC-455U/190220 plasmid pEcoUTI1a, complete
            sequence.
ACCESSION   NZ_CP049843
VERSION     NZ_CP049843.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14277528
            Assembly: GCF_019443605.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 1822)
  AUTHORS   Velez-Sanchez,D., Ochoa,S.A., Cruz-Cordova,A., Lopez-Martinez,B.,
            Parra-Ortega,I., Escobedo-Munoz,A.S., Bustos,P., Cevallos,M.A. and
            Xicohtencatl-Cortes,J.
  TITLE     Comparative Genomics of Uropathogenic Escherichia coli Strains
            Isolated from Adult Women with Recurrent Urinary Tract Infections
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1822)
  AUTHORS   Velez-Sanchez,D., Ochoa,S.A., Cruz-Cordova,A., Lopez-Martinez,B.,
            Parra-Ortega,I., Escobedo-Munoz,A.S., Bustos,P., Cevallos,M.A. and
            Xicohtencatl-Cortes,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2020) Centro de Ciencias Genomicas, Universidad
            Nacional Autonoma de Mexico, Circuito Universidad, Cuernavaca 66210,
            Mexico
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 19-FEB-2020
            Assembly Method                   :: Unicycler v. v0.4.1
            Assembly Name                     :: UTI-3_GENOME
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 286.563x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/07/2023 05:46:49
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,119
            CDSs (total)                      :: 5,000
            Genes (coding)                    :: 4,774
            CDSs (with protein)               :: 4,774
            Genes (RNA)                       :: 119
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 91
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 226
            CDSs (without protein)            :: 226
            Pseudo Genes (ambiguous residues) :: 1 of 226
            Pseudo Genes (frameshifted)       :: 90 of 226
            Pseudo Genes (incomplete)         :: 151 of 226
            Pseudo Genes (internal stop)      :: 37 of 226
            Pseudo Genes (multiple problems)  :: 50 of 226
            Pseudo Genes (short protein)      :: 4 of 226
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP049843.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1822
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="UPEC-455U/190220"
                     /isolation_source="bladder epithelial biopsy from
                     60-year-old female patient with recurrent urinary tract
                     infection"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="pEcoUTI1a"
                     /geo_loc_name="Mexico: Mexico City"
                     /collection_date="2019-02-20"
                     /collected_by="Hospital Militar de Especialidades de la
                     mujer y neonatologia"
     gene            133..666
                     /locus_tag="G9W36_RS24815"
                     /old_locus_tag="G9W36_24755"
     CDS             133..666
                     /locus_tag="G9W36_RS24815"
                     /old_locus_tag="G9W36_24755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005707163.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_000893324.1"
                     /translation="MLEQQFEDFEQQKRRDHQAQDQSKSAKQKRDRLNPPDWSQVTKAG
                     WNMLDSISEKVPRAFRLYSFFAQNIDKSCGAVVCDQKFLADYFGVSLRTIQYWIGDLES
                     IGAIVKIPVGIYYAYALDPYQVWRGYNKSKKYAAFNAKTLTQKDGVIDRKLRLMLSRRE
                     EFEGSLKTSNHDLD"
                     /name="replication/maintenance protein RepL"
     gene            679..966
                     /locus_tag="G9W36_RS24820"
                     /old_locus_tag="G9W36_24760"
     CDS             679..966
                     /locus_tag="G9W36_RS24820"
                     /old_locus_tag="G9W36_24760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001220925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_023909281.1"
                     /translation="MRIKYESRWKLEELKLEICRSIDSLIDEYHIEYAMGINLYMNCED
                     KEFNPVDIVNEDGKNIMFVVSNNEKIQKPKKSAKKKIPAPVIELDKYRKK"
                     /name="hypothetical protein"
     Typing          complement(1209..1469)
                     /name="Col(MG828)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="91.603"
                     /coverage="100.0"
                     /evalue="8.62e-98"
ORIGIN
        1 aaagcattat gacaccaaca tacgaaacgt tatttgcatg tgtatacgca aacatgtttg
       61 cgtgtgttgt ttcgtaatgt acgatataaa tttcgtaagg tacgaaacaa cgttgcaggt
      121 aaggatgcaa gtatgctgga acagcaattt gaagatttcg aacagcaaaa acggcgagat
      181 catcaggcac aagatcaatc caaaagtgct aagcaaaaac gagatcggtt gaatccacct
      241 gactggtcgc aggttactaa ggcgggctgg aatatgttgg actctatatc tgagaaggtt
      301 cccagagcat ttaggctata ttcttttttt gctcaaaata tagataaatc gtgtggggct
      361 gttgtatgtg accaaaaatt cttagctgat tatttcggtg ttagtttaag gacgatccaa
      421 tattggattg gagatttaga aagtattggt gccatcgtga aaataccagt aggtatctat
      481 tatgcttatg cgttagatcc gtatcaggta tggcgcggat ataataaatc taaaaaatat
      541 gcagcgttta acgcaaaaac attaactcaa aaagatggcg ttattgatcg caagttgcgg
      601 ctcatgctct ctaggagaga agagtttgaa ggctcgctta agacatctaa tcatgacttg
      661 gactaggtat gatgcgctat gagaattaaa tatgaatcac gttggaaatt agaagaacta
      721 aaattagaaa tatgtagatc aatagattcg ttaattgatg aatatcatat cgaatatgca
      781 atgggaataa atctatatat gaattgtgaa gataaggagt ttaatcccgt tgatattgtc
      841 aatgaagatg gaaagaatat tatgtttgtt gttagcaaca atgaaaaaat acaaaaacca
      901 aaaaaaagtg cgaagaaaaa aattcctgca cctgtaattg agttagataa atatcggaaa
      961 aagtgatggc catacagagc cagcggcagg cggacaatcc acagaacatt gcatgcaatt
     1021 tctagttgat tgtctatcct gcattgctct tttgcctcct caaaatccct tgcgtctttt
     1081 tgctccccgt tttccagaac gaccgagccg ccacggttcc ggcagcgcct tgagcgcaac
     1141 cggaaaccgt ctggggagaa ccccagaccc ccatcgctgt aacatcgacg gtctacgacc
     1201 acctaccaac cgcgtggctg cctattccgt gcaaatgggc tttgcagggg gctaacgcgg
     1261 ttcctggcga cctgaaatcc cctggttagg ggtatcggcg cgcctgacct cctaaaaccc
     1321 tctgtaagcg tttttcgcgc cttccatgcc ctgatgggca tttaaaaccc gtttcgtgcg
     1381 tctgagagct tctgagagcg tttgaagagc tatctggcga ctcatccccg aaagaacaac
     1441 agcggaatca ccgataacat gcgagaggtg gcaccgctcg ccgcagcccc agcgaccgaa
     1501 cgttagtgag cgagtgggcg aggaagcgga agagaaccgg aaaccacatt gagcacgtac
     1561 gcactgatgc ggggcgtttt agcggtgaac ggactgcaaa aacatgatcg agctgttgaa
     1621 cgtggagagc gcgaaatcgg gcaaaatcac ggctggcgag gcttgcagaa gagtaagcca
     1681 gtatacactc cgctatcgct acgtgactgg gtcagggctt cgccccgaca ccccaaatgt
     1741 tcgatgaact aattaaatct tgtgtagcaa aaaagtgctt tgatagatct ttagagcaaa
     1801 aatcgacatt ctcttaaaaa tc
//
