LOCUS       NZ_CP049755             2683 bp    DNA     circular CON 24-JUL-2023
DEFINITION  Proteus mirabilis strain PmBR607 plasmid unnamed2, complete
            sequence.
ACCESSION   NZ_CP049755
VERSION     NZ_CP049755.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12995602
            Assembly: GCF_011149675.1
KEYWORDS    RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 2683)
  AUTHORS   Sato,J., Fonseca,M., Cerdeira,L., Sincero,T., Tognim,M., Noronha,M.,
            Lincopan,N. and Galhardo,R.
  TITLE     Proteus mirabilis ICE SXT/R391 genomic comparative analysis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2683)
  AUTHORS   Sato,J., Fonseca,M., Cerdeira,L., Noronha,M., Tognim,M. and
            Galhardo,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-OCT-2019) Microbiology, USP, Av. Professor Lineu
            Prestes 1374, Sao Paulo, SP 05508-900, Brazil
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.11
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200x
            Sequencing Technology             :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/24/2023 01:00:33
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,746
            CDSs (total)                      :: 3,637
            Genes (coding)                    :: 3,578
            CDSs (with protein)               :: 3,578
            Genes (RNA)                       :: 109
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 26 of 59
            Pseudo Genes (incomplete)         :: 32 of 59
            Pseudo Genes (internal stop)      :: 17 of 59
            Pseudo Genes (multiple problems)  :: 13 of 59
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP049755.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2683
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /strain="PmBR607"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:584"
                     /plasmid="unnamed2"
                     /geo_loc_name="Brazil"
                     /lat_lon="23.556174 S 46.627129 W"
                     /collection_date="2015"
                     /collected_by="Mario C. Noronha do Amaral"
     gene            complement(join(2269..2683,1..230))
                     /locus_tag="G9C79_RS18760"
                     /old_locus_tag="G9C79_18760"
     CDS             complement(join(2269..2683,1..230))
                     /locus_tag="G9C79_RS18760"
                     /old_locus_tag="G9C79_18760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrD1"
                     /protein_id="WP_012634451.1"
                     /translation="MEKHFINEKFSRDQFTGNRVKNIAFSNCDFSGVDLTDTEFVDCSF
                     YDRNSLEGCDFNRAKLKNASFKSCDLSMSNFKNISALGLEISECLAQGADFRGANFMNM
                     ITTRSWFCSAYITKTNLSYANFSRVILEKCELWENRWNGTVITGAVFRGSDLSCGEFSS
                     FDWSLADFTGCDLTGGALGELDARRINLDGVKLDGEQALQLVESLGVIVHR"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrD1"
     gene            complement(1191..1631)
                     /locus_tag="G9C79_RS18765"
                     /old_locus_tag="G9C79_18765"
     CDS             complement(1191..1631)
                     /locus_tag="G9C79_RS18765"
                     /old_locus_tag="G9C79_18765"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_015063446.1"
                     /translation="MSQLFRLASPEDYEYIEELNLWELSFDKRPVQGVRCEDPVIGAEK
                     YNQGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDISMLKQLEEKVR"
                     /name="hypothetical protein"
     ARG             complement(2270..2682)
                     /name="QnrD1"
                     /gene="QnrD1"
                     /gene_name="quinolone resistance protein (qnr)"
                     /tool="rgi"
                     /drug_class="fluoroquinolone antibiotic"
                     /identity="100.0"
                     /coverage="64.02"
     ARG             complement(4..230)
                     /name="QnrD1"
                     /gene="QnrD1"
                     /gene_name="quinolone resistance protein (qnr)"
                     /tool="rgi"
                     /drug_class="fluoroquinolone antibiotic"
                     /identity="100.0"
                     /coverage="35.51"
     Typing          complement(325..480)
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.089"
                     /coverage="100.0"
                     /evalue="2.29e-71"
ORIGIN
        1 ttaaaattac tcattgataa atcgcagctt ttaaagctag cgttttttag tttggctcta
       61 ttaaaatcac acccttccaa gctattcctg tcgtaaaaac tacaatcaac aaattcagta
      121 tcagttaaat caacccctga aaaatcacaa tttgaaaagg caatattttt aactctattc
      181 cccgtaaatt gatctcgtga aaacttttca ttgataaagt gcttttccat acatgctaca
      241 cctggttatt tatacagtgc aatcattgta cattaatttg aacaacctta aactctagct
      301 aaaattgatt catacaatcc cttttatgtt aaacgggcga gttagttagc aaaaacctcc
      361 cgttcatccc cattaaagcc cctcgaaacg attttaagac acgatcaccc tataaaacac
      421 ccaaatctac gctgaaagtt tagaacggtt ttgcgggctt ctgagtgcgt ttttaacatc
      481 gtgcaaactg acaagtaaaa cgatgcgaaa tcgctgaaag tcacaaactt gttttgtggc
      541 aagaagcgat ttgaccaacc gagtaaaacg agggcggtag gctttttgtt tttatcctga
      601 tgagcgtcca gcgaagaaag ggaaaaacag ggggagccga aacgaaatga cacgccccag
      661 cgatggcaag tgaaccccag tgaacgtgtt tcgttttggg ggcaaagccc cccgtcaagc
      721 gaagcgtctg accaccacat ttttgagcga ccaaatacag gggcgaaaaa agggggtggt
      781 cagacgaacg cagtgagttt gacgggcttg ggtgaatggt ttttttcgca ggcgtccagc
      841 cgaagaaaat agccagaggg cggagcctta tgtcattcat tttcgtccag aaaatgagtg
      901 gcattgatac tgaaagtatc atggggtgca agttagtaaa actatgattc tacccattat
      961 ttcacccgtt attctgcccg ttatacctaa attgggtgca ataacgggta aagtaatagg
     1021 tagaataaca ggtggattaa tgggtaagaa ataacacaac gtcatcttgt gtctatctat
     1081 tattctgtat cttattctat gtattattct acctattaca gacgaaatag ataaaataag
     1141 agatagaata atagatagga taatacataa aataataggt aaacctaacg tcagcgcacc
     1201 ttttcttcga gctgttttag catcgaaata tcacctaata accgttgatt tttacctgtg
     1261 aaaaagatga tcggactgac atttgcatta tcaatacttc ggcttaactg aattcccatc
     1321 gcctgataat catcatcgtt tgtgcaatgg tataacgcta aaacaagctg acattgttct
     1381 ggagttccgc attctattgc ccagcggatc aactccgaaa aggtcaatcc gttcggtttc
     1441 cagtgttttt tatgccgtga cgctaacgcc ttaaattttt cacgcccttg attatatttt
     1501 tctgccccga tcaccggatc ttcacaacga accccttgaa ccggtcgctt atcaaatgac
     1561 aattcccata aatttaattc ttcgatgtat tcgtaatctt ctggcgatgc caaacgaaat
     1621 aattgagaca tagagacacc ctccgatcat gtgtgaacgg agacagtata aggctttcga
     1681 gaaattccgc ttcctcgacg tgaaacaagt tcacgccttg cggcgagcgt tgcgaattga
     1741 atttatgagg tttaccaagc tccagatgta acaaagcccc gtgacagcat cacagggctc
     1801 tggtactcta aatcttgtgc attcgttgct cagattagac gtcgcaatcc aatcttagca
     1861 acgtgagagg cgcttgtcac gttctcatta aataccagcc aacgacatta acccaaatgc
     1921 accacttgat tgactcggac ttagcccggt ctccgaaagg ataaacaggc aaattgtggt
     1981 agtaaaacgt accggaaaac gaaattccgg ctctacctcc gaatcacgct gcggtatcga
     2041 aagattacag tgcgtacctg ataagagcac caatcaacgg actagggatt tcttggattg
     2101 cgaagtgtcg aaagaagccc aacctaacca aacttagcca gattaacgag ctaagagacc
     2161 atgacccaat aactgatcat ggagaaaagc aaagacaaga tgaagatgtc gcttcgctcc
     2221 gttttgatta gtaccacatt ggggcattag gcgtttttta cctagatttt atcggtgaac
     2281 aataacacct aaactctcaa caagctgaag cgcctgctct ccatccaact tcactccatc
     2341 taaattaatt cgccttgcat caagctcgcc aagcgcccca cccgttaaat cacaaccagt
     2401 aaaatcagcc aaagaccaat caaacgatga aaactcccca caagaaagat cggagccacg
     2461 aaacacggcg ccagttatca cagtgccatt ccagcgattt tcccacagtt cgcacttttc
     2521 taatatgact ctagaaaaat tagcgtaact aagatttgtc ttggttatat aagcactaca
     2581 aaaccatgac cttgtagtta tcatattcat aaaattagcc cctcgaaaat cagctccttg
     2641 agctaaacac tcactaattt caagacctaa ggcgctaatg ttt
//
