LOCUS       NZ_CP049195             2495 bp    DNA     circular CON 22-APR-2024
DEFINITION  Enterobacter hormaechei strain Y2152 plasmid pDC2152-2, complete
            sequence.
ACCESSION   NZ_CP049195
VERSION     NZ_CP049195.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14151378
            Assembly: GCF_011045355.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2495)
  AUTHORS   Zhu,X. and Bao,Q.
  TITLE     Prevalence of Aminoglycoside Resistance Genes and Molecular
            Characterization of a Novel Gene aac(3)-IIg among Clinical Isolates
            of Enterobacter cloacae Complex from a Chinese Teaching Hospital
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2495)
  AUTHORS   Zhu,X. and Bao,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-FEB-2020) Laboratory Medicine, College of Life
            Science, Wenzhou Medical University, Wenzhou Medical University,
            Wenzhou, Zhejiang 325000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. v1.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011045355.1-RS_2024_04_22
            Annotation Date                   :: 04/22/2024 04:25:01
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,892
            CDSs (total)                      :: 4,778
            Genes (coding)                    :: 4,587
            CDSs (with protein)               :: 4,587
            Genes (RNA)                       :: 114
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 191
            CDSs (without protein)            :: 191
            Pseudo Genes (ambiguous residues) :: 0 of 191
            Pseudo Genes (frameshifted)       :: 120 of 191
            Pseudo Genes (incomplete)         :: 68 of 191
            Pseudo Genes (internal stop)      :: 26 of 191
            Pseudo Genes (multiple problems)  :: 23 of 191
            Pseudo Genes (short protein)      :: 1 of 191
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP049195.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="Y2152"
                     /host="Homo sapiens"
                     /db_xref="taxon:158836"
                     /plasmid="pDC2152-2"
                     /geo_loc_name="China:Wenzhou"
                     /collection_date="2007-01-31"
     gene            406..624
                     /locus_tag="G5577_RS24300"
                     /old_locus_tag="G5577_24305"
     CDS             406..624
                     /locus_tag="G5577_RS24300"
                     /old_locus_tag="G5577_24305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_198129632.1"
                     /translation="MFGFSSGALMTLSDDERHLLVSVVSVWLRRAGGDAGAMMLDAYRQ
                     ILSETEPAVRTVMLEFLESVRIHYISS"
                     /name="hypothetical protein"
     gene            complement(915..1100)
                     /locus_tag="G5577_RS24305"
                     /old_locus_tag="G5577_24310"
     CDS             complement(915..1100)
                     /locus_tag="G5577_RS24305"
                     /old_locus_tag="G5577_24310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_013772937.1"
                     /translation="MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEENA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(1466..1693)
                     /locus_tag="G5577_RS24310"
                     /old_locus_tag="G5577_24315"
     CDS             complement(1466..1693)
                     /locus_tag="G5577_RS24310"
                     /old_locus_tag="G5577_24315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     Typing          781..868
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          complement(2109..2495)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.567"
                     /coverage="87.0"
                     /evalue="2.61e-136"
ORIGIN
        1 tttggcgcgg ccttatgctt tcttcgttaa gtatcttcct ggcatccccc aggaaatttc
       61 tgatccatcc gtaagcccgt cccgctcgcc gcagccgaac gaccgagcgg agcgagtcag
      121 tgagcgagga agcggaatat attctgtatc acattttctc ctgacgcgtt ttctttcact
      181 ttctgcgcct gtcttatgtg gcattaatgc tatgtgttac tgccatgcta catcttaagc
      241 cagtatacac tccgctagtg ctccgtgact ggtccggcgc tgcgcccgga acccgcctgt
      301 accggttcag cagccgttcc ggcctgactg caattttttt tttttcatcc ctgcccgcta
      361 ccctgtaaac ctttcttctg cgttgccgtt aacagtaggt aagccatgtt tggtttttct
      421 tccggagccc tgatgactct tagtgatgat gagcgacacc tgcttgtgtc cgttgtttcg
      481 gtctggctac ggcgtgccgg aggggatgcc ggagccatga tgctggatgc ataccggcag
      541 attttgtctg aaaccgaacc ggccgtaagg actgtcatgc tcgaatttct tgaatccgtt
      601 cgcattcatt acatttcgtc ctgagcattt tctgtatttc tgtccatact taaacgaggc
      661 ggccgtcacg gacggtggtc gtcgttccat gatgctgtta tggacgagtg agagtaatct
      721 aatctaactt gattgagttc cgggcgtgcc gcccggtttt ttttgctgtt tcccggtgtc
      781 cgttccggga caggatgtgc atttgtaata ccgcgcacgc gccggcatca caaataccct
      841 ggtcagggct gcgccccgac accccgccat cgcctcacgg ccgcgcactg aattgcgcac
      901 ccgttcaccg attttcacgc attttcctcg cctatctgtg cgttcagcat ggcgtaaagc
      961 gcttcggcct gatcgtgcag gtgctcacag cagccggcag cctcatccag atccatctgc
     1021 tcgagccgct caaggaggag aagtgtctgt gcgcggataa atttggccat attgagggcg
     1081 gcggattcct gtctggtcac tggtgatttt ccccgtctgg tgatgatttt tgcgtgaaaa
     1141 gagcatggcg tcattctggt gcatagtcat gcatgccgtt aaaatttaac aggcgcgttt
     1201 ctgacgggtt ccggggtggt ttgttgtggt ttttgtcatg gtttcgtcag gaacgcgctg
     1261 aacgcgtctc aggcggtgcg ggcaacggat gttatggtaa attcttgggg gcttgattat
     1321 aaaataccgc acttcctctt atgtcttgtg ctttttagac aaccctgaaa gcttttagct
     1381 ttggtgatgc aatttgctgg gattttggcg gagaaccaca ggtaaagaaa aaggccacat
     1441 tagcggcctt tttcggagaa gatgctcagt gcggaatttc ggagacttct ttaacgtcgg
     1501 ttttattgat ctgctgtttg acaccattcg cgtctgtata gccaagcagg cctgagtctg
     1561 attctttagg tttgccgtcg ctgacaatag tgcgaccgtc attggtgtgt atggcatagc
     1621 ttgtgcgcgt gcagccggtg agggctgaaa gcgcaactgc cgctgcgaac actgaaacaa
     1681 aaatcttttt caaagccagc tccttttatc catatcagtt ttggtcacta accatctaac
     1741 tataggtcat tttttatgtg aaaagaggct tgatggtggg ctgtatatcg agttaggcgc
     1801 gaggtgctat ggtcaaagtg tggtgtcagg cggggaggag gcttatatga gatgtaatcc
     1861 ggccgataca tataccaaga tgatttaagt attcctcttt gtgaggttgg atgtctaatt
     1921 tataaaggat cttcttgaga tccttttttt ccgcgcgtaa tctcttgccc tgtaaacgaa
     1981 aaaaccaccc tggcaggtgg tttttcgaag gttaggtaat cctggcagat cccctaaccg
     2041 tggtaacagt cttgtgcgag acatgtcacc aaatttgtcc tttcagtgta gcctcactaa
     2101 ggccgccact tcaagaactc ttgagacatc tctcgcacat cctgtttgcc aatggccgtt
     2161 gccaatggcg attagtcgtg tctttccggg ttggactcaa gttgatagtt accggataag
     2221 gcgcagcggt cggactgaac ggggggttcg tgcatacagt ccatcctgga gcgaactgcc
     2281 ttcccggaac tgagtgtcag gcgtggaatg agaaaccgcg gccataacag cggagtgaca
     2341 ccggtaaacc gaaaggcagg aatgcggggg agcacgaggg agccaccagg gggaaacgcc
     2401 tggtatcttt aagccgcatc gggtttcgcc accactgatt tgagcgtcag attctgtgat
     2461 gcttgtcagg ggggcggagc ctatggaaaa acggc
//
