LOCUS       NZ_CP048850             2277 bp    DNA     circular CON 05-JAN-2024
DEFINITION  Acinetobacter baumannii strain D4 plasmid pD4-1, complete sequence.
ACCESSION   NZ_CP048850
VERSION     NZ_CP048850.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13874777
            Assembly: GCF_018808925.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2277)
  AUTHORS   Hamidian,M., Cahill,S.M., Nigro,S.J., Judd,L.M., Kenyon,J.,
            Holt,K.E. and Hall,R.M.
  TITLE     Complete genome sequences of two sporadic Australian Acinetobacter
            baumannii ST25 isolates, D4 and D46
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2277)
  AUTHORS   Hamidian,M., Cahill,S.M., Nigro,S.J., Judd,L.M., Kenyon,J.,
            Holt,K.E. and Hall,R.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JAN-2020) ithree Institute, The University of Sydney,
            Harris Street, Ultimo, NSW 2007, Australia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: OCT-2019
            Assembly Method                   :: Hybrid assembly v. 4.0
            Assembly Name                     :: D4-assembly
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: Illumina; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/05/2024 13:24:47
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,152
            CDSs (total)                      :: 4,056
            Genes (coding)                    :: 3,956
            CDSs (with protein)               :: 3,956
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 100
            CDSs (without protein)            :: 100
            Pseudo Genes (ambiguous residues) :: 0 of 100
            Pseudo Genes (frameshifted)       :: 32 of 100
            Pseudo Genes (incomplete)         :: 64 of 100
            Pseudo Genes (internal stop)      :: 17 of 100
            Pseudo Genes (multiple problems)  :: 12 of 100
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP048850.1.
            Bacteria and source DNA available from Ruth Hall.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2277
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="D4"
                     /isolation_source="wound"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pD4-1"
                     /geo_loc_name="Australia: Sydney"
                     /lat_lon="33.87 S 151.21 E"
                     /collection_date="2006"
                     /collected_by="Peter Huntington"
     gene            144..1076
                     /gene="repM"
                     /locus_tag="AbD4_RS19955"
                     /old_locus_tag="AbD4_p100001"
     CDS             144..1076
                     /gene="repM"
                     /locus_tag="AbD4_RS19955"
                     /old_locus_tag="AbD4_p100001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005265321.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein RepM"
                     /protein_id="WP_000711927.1"
                     /translation="MKKELVVKDNALINASYNLDLSEQRLILLAILEARQSNTPNDKDL
                     TIHAESYINHFNVHRNTAYKVLKDACKSLFDRRFSYQKLTQKGNIENVISRWVQRISYV
                     ENEALVRIKFSDDVVPLITNLEKHFTSYELEQVSSLTSVYAIRLYELLIAWRSTGKVTM
                     VELEELRLKLGIEPNEYKRMGQFKEKVLHLAIDQINKYTDIKAEYEQHKRGRSIIGFSF
                     KFKQKQQPKKLDSKRDPNTPDFFIRMTDAQRHLFGNKLAHDARVQSEYSHLIGTGSYED
                     FAKLLADMLAEEQHFKMFYPLLVEHGYKA"
                     /name="repM"
     Typing          505..1076
                     /name="rep_cluster_1280"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ataagtacac ctttatcttg caataagtac acctttatct tgcaataagt acacctttat
       61 cttgcaataa gtacaccttt atcttgcaaa gtgacactta ataaaataga gtgtacttat
      121 atacttaaaa gacatgtgtg cttatgaaaa aagaactagt cgttaaagat aatgcactaa
      181 taaatgccag ttataattta gacctatcag aacaacgttt aatactgtta gccatacttg
      241 aagctaggca atcaaataca cccaatgata aagatttgac gattcatgct gaaagctata
      301 tcaaccattt caatgttcat agaaatacag cctataaagt tcttaaagat gcttgcaaaa
      361 gcctatttga tcgtagattt agctatcaaa aactgactca aaagggcaac attgagaatg
      421 taataagtcg atgggtacaa cgaatatctt atgtagagaa tgaagctctt gttcgtatta
      481 agttttctga tgatgttgta ccgttgatta caaatttaga aaaacacttc actagttatg
      541 aactagagca agtcagcagt ttaactagtg tttacgctat acgcttgtat gagttgctta
      601 tcgcatggcg tagtacgggc aaagtgacta tggtagagct agaagagcta agattaaaac
      661 taggcataga acccaatgaa tacaagagaa tggggcaatt taaagaaaaa gttttacacc
      721 ttgccattga tcaaattaat aagtacacag atataaaagc agagtatgaa caacacaaac
      781 gtggtcgttc aattattggt ttttcattta agtttaagca gaaacaacaa ccgaaaaaat
      841 tagattctaa gcgtgaccca aacacacctg acttttttat cagaatgacc gatgcacaac
      901 gccacttatt tgggaacaaa ctagcccatg atgctcgtgt acaaagcgaa tacagccatt
      961 taattggtac tggaagctat gaagactttg caaaattact ggcggatatg cttgcagaag
     1021 aacagcattt taagatgttt taccctttgc ttgtagagca tggttacaaa gcataaatct
     1081 tgtcgtattc tatcaatggt agataagtca tttcgacctt ccttatctat gtacaagata
     1141 aggtggcgcc accaatacgc caatattggt ggatagccac caacccctct aaattgcgtt
     1201 ttaagcgatc caaatccaac aagctacatt cacataccca ctgcgagcaa agctcgaaat
     1261 atcgcatcct atgagcaaat agagcatgta atcagggagg gtgtgcttgt ttttgcattt
     1321 catcagttca ctcgtagaca ctcgctctaa aaatctatct gtgcttttca ttttggcttt
     1381 agccaaagaa agccccgaag gggtgtgaag cgaaagcgga acatcatcga agccccagcg
     1441 gagatgactg gggggagccg acaacgtaaa agggagtgga cacgaacttt agacatcccc
     1501 agatgtcgtt agttgttggg gggcaagccc accccgtcaa actatcccga aggggagttg
     1561 acccacctcg ttttagtgta agcgttcagc gaatccgaag gacatacgag cctaagcgaa
     1621 atatgcacct aaaagggggt gggtcaactc cgtaggagga tgacggggcg cgagcacgaa
     1681 gtgcgctgca acttggagcg atagcggaaa gtgaaaggca acaaaaaacg attattaagg
     1741 gcgtccagcc cttaaagtac aaggaatcct gacgtccagg aaggacgagc gaagcgagct
     1801 tgtacggtaa ttgtttttag gcgcagcgaa gcgaagtgtc tgtgcctttt actgtgcttt
     1861 tatcggtgca ctaaaaatcc aataaaagca ccatagaaag cacagataga attaaccgag
     1921 cgagtgtcta cgagcgattg agcatcatca aaatttcgcc ctcgcctttt ctctgattac
     1981 aagctccctt tcgattttaa acggtaggta cagagcatcc cgaatgggtg cgaactttgg
     2041 agcttttgct tttcaaaaag tatgagcgaa gcgaatacat tacaaatgct tttgctttta
     2101 gatttcacaa acaggattaa ctaaaaactg ccccacgaag cgaggaacga gcttcaatag
     2161 agtacgagct ttagcgagta catagggcag ttttaagcac tcccctcttt ttaataattt
     2221 ttaatttttt aatttttagc ctctgtaatt aattgataaa taataataaa aataagg
//
