LOCUS       NZ_CP048808             2683 bp    DNA     circular CON 01-APR-2024
DEFINITION  Morganella morganii strain MP63 plasmid pMP63B, complete sequence.
ACCESSION   NZ_CP048808
VERSION     NZ_CP048808.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14085905
            Assembly: GCF_010748915.1
KEYWORDS    RefSeq.
SOURCE      Morganella morganii (Proteus morganii)
  ORGANISM  Morganella morganii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Morganella.
REFERENCE   1  (bases 1 to 2683)
  AUTHORS   Cao,G.
  TITLE     Complete genome of Morganella morganii MP63
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2683)
  AUTHORS   Cao,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-FEB-2020) Shandong Medicinal Biotechnology Center,
            Shandong First Medical University, 18877 Jinshi Road, Jinan 250062,
            China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. Dec-2019
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 364.0x
            Sequencing Technology             :: BGISEQ
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_010748915.1-RS_2024_04_01
            Annotation Date                   :: 04/01/2024 03:38:21
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,806
            CDSs (total)                      :: 3,699
            Genes (coding)                    :: 3,665
            CDSs (with protein)               :: 3,665
            Genes (RNA)                       :: 107
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 10 of 34
            Pseudo Genes (incomplete)         :: 27 of 34
            Pseudo Genes (internal stop)      :: 8 of 34
            Pseudo Genes (multiple problems)  :: 9 of 34
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP048808.1.
            Bacteria and source DNA available from Dr Guangxiang Cao from
            Shandong First Medical University.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2683
                     /organism="Morganella morganii"
                     /mol_type="genomic DNA"
                     /strain="MP63"
                     /isolation_source="wastewater"
                     /db_xref="taxon:582"
                     /plasmid="pMP63B"
                     /geo_loc_name="China:Jinan"
                     /collection_date="2018-06-02"
     gene            307..951
                     /locus_tag="G3577_RS19025"
                     /old_locus_tag="G3577_19025"
     CDS             307..951
                     /locus_tag="G3577_RS19025"
                     /old_locus_tag="G3577_19025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrD1"
                     /protein_id="WP_012634451.1"
                     /translation="MEKHFINEKFSRDQFTGNRVKNIAFSNCDFSGVDLTDTEFVDCSF
                     YDRNSLEGCDFNRAKLKNASFKSCDLSMSNFKNISALGLEISECLAQGADFRGANFMNM
                     ITTRSWFCSAYITKTNLSYANFSRVILEKCELWENRWNGTVITGAVFRGSDLSCGEFSS
                     FDWSLADFTGCDLTGGALGELDARRINLDGVKLDGEQALQLVESLGVIVHR"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrD1"
     gene            1589..2029
                     /locus_tag="G3577_RS19030"
                     /old_locus_tag="G3577_19030"
     CDS             1589..2029
                     /locus_tag="G3577_RS19030"
                     /old_locus_tag="G3577_19030"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_015063446.1"
                     /translation="MSQLFRLASPEDYEYIEELNLWELSFDKRPVQGVRCEDPVIGAEK
                     YNQGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDISMLKQLEEKVR"
                     /name="hypothetical protein"
     ARG             308..948
                     /name="qnrD1"
                     /gene="qnrD1"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrD1"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          58..213
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.089"
                     /coverage="100.0"
                     /evalue="2.29e-71"
ORIGIN
        1 caaaacaagt ttgtgacttt cagcgatttc gcatcgtttt acttgtcagt ttgcacgatg
       61 ttaaaaacgc actcagaagc ccgcaaaacc gttctaaact ttcagcgtag atttgggtgt
      121 tttatagggt gatcgtgtct taaaatcgtt tcgaggggct ttaatgggga tgaacgggag
      181 gtttttgcta actaactcgc ccgtttaaca taaaagggat tgtatgaatc aattttagct
      241 agagtttaag gttgttcaaa ttaatgtaca atgattgcac tgtataaata accaggtgta
      301 gcatgtatgg aaaagcactt tatcaatgaa aagttttcac gagatcaatt tacggggaat
      361 agagttaaaa atattgcctt ttcaaattgt gatttttcag gggttgattt aactgatact
      421 gaatttgttg attgtagttt ttacgacagg aatagcttgg aagggtgtga ttttaataga
      481 gccaaactaa aaaacgctag ctttaaaagc tgcgatttat caatgagtaa ttttaaaaac
      541 attagcgcct taggtcttga aattagtgag tgtttagctc aaggagctga ttttcgaggg
      601 gctaatttta tgaatatgat aactacaagg tcatggtttt gtagtgctta tataaccaag
      661 acaaatctta gttacgctaa tttttctaga gtcatattag aaaagtgcga actgtgggaa
      721 aatcgctgga atggcactgt gataactggc gccgtgtttc gtggctccga tctttcttgt
      781 ggggagtttt catcgtttga ttggtctttg gctgatttta ctggttgtga tttaacgggt
      841 ggggcgcttg gcgagcttga tgcaaggcga attaatttag atggagtgaa gttggatgga
      901 gagcaggcgc ttcagcttgt tgagagttta ggtgttattg ttcaccgata aaatctaggt
      961 aaaaaacgcc taatgcccca atgtggtact aatcaaaacg gagcgaagcg acatcttcat
     1021 cttgtctttg cttttctcca tgatcagtta ttgggtcatg gtctcttagc tcgttaatct
     1081 ggctaagttt ggttaggttg ggcttctttc gacacttcgc aatccaagaa atccctagtc
     1141 cgttgattgg tgctcttatc aggtacgcac tgtaatcttt cgataccgca gcgtgattcg
     1201 gaggtagagc cggaatttcg ttttccggta cgttttacta ccacaatttg cctgtttatc
     1261 ctttcggaga ccgggctaag tccgagtcaa tcaagtggtg catttgggtt aatgtcgttg
     1321 gctggtattt aatgagaacg tgacaagcgc ctctcacgtt gctaagattg gattgcgacg
     1381 tctaatctga gcaacgaatg cacaagattt agagtaccag agccctgtga tgctgtcacg
     1441 gggctttgtt acatctggag cttggtaaac ctcataaatt caattcgcaa cgctcgccgc
     1501 aaggcgtgaa cttgtttcac gtcgaggaag cggaatttct cgaaagcctt atactgtctc
     1561 cgttcacaca tgatcggagg gtgtctctat gtctcaatta tttcgtttgg catcgccaga
     1621 agattacgaa tacatcgaag aattaaattt atgggaattg tcatttgata agcgaccggt
     1681 tcaaggggtt cgttgtgaag atccggtgat cggggcagaa aaatataatc aagggcgtga
     1741 aaaatttaag gcgttagcgt cacggcataa aaaacactgg aaaccgaacg gattgacctt
     1801 ttcggagttg atccgctggg caatagaatg cggaactcca gaacaatgtc agcttgtttt
     1861 agcgttatac cattgcacaa acgatgatga ttatcaggcg atgggaattc agttaagccg
     1921 aagtattgat aatgcaaatg tcagtccgat catctttttc acaggtaaaa atcaacggtt
     1981 attaggtgat atttcgatgc taaaacagct cgaagaaaag gtgcgctgac gttaggttta
     2041 cctattattt tatgtattat cctatctatt attctatctc ttattttatc tatttcgtct
     2101 gtaataggta gaataataca tagaataaga tacagaataa tagatagaca caagatgacg
     2161 ttgtgttatt tcttacccat taatccacct gttattctac ctattacttt acccgttatt
     2221 gcacccaatt taggtataac gggcagaata acgggtgaaa taatgggtag aatcatagtt
     2281 ttactaactt gcaccccatg atactttcag tatcaatgcc actcattttc tggacgaaaa
     2341 tgaatgacat aaggctccgc cctctggcta ttttcttcgg ctggacgcct gcgaaaaaaa
     2401 ccattcaccc aagcccgtca aactcactgc gttcgtctga ccaccccctt ttttcgcccc
     2461 tgtatttggt cgctcaaaaa tgtggtggtc agacgcttcg cttgacgggg ggctttgccc
     2521 ccaaaacgaa acacgttcac tggggttcac ttgccatcgc tggggcgtgt catttcgttt
     2581 cggctccccc tgtttttccc tttcttcgct ggacgctcat caggataaaa acaaaaagcc
     2641 taccgccctc gttttactcg gttggtcaaa tcgcttcttg cca
//
