LOCUS       NZ_CP048396             2058 bp    DNA     circular CON 20-JUN-2024
DEFINITION  Klebsiella pneumoniae strain S01 plasmid pKPS01_p7, complete
            sequence.
ACCESSION   NZ_CP048396
VERSION     NZ_CP048396.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13968567
            Assembly: GCF_023612215.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Zhu,Y., Lu,J., Zhao,J., Velkov,T. and Li,J.
  TITLE     Whole genome sequencing and genome-scale metabolic modelling of
            NDM-producing MDR Klebsiella pneumoniae S01
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Zhu,Y., Lu,J., Zhao,J., Velkov,T. and Li,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-FEB-2020) Faculty of Medicine, Nursing and Health
            Sciences, Monash University, 19 Innovation Walk, Clayton, VIC 3800,
            Australia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: FADDI_Monash_KPS01_1.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 320.0x
            Sequencing Technology             :: PacBio RSII; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023612215.1-RS_2024_06_20
            Annotation Date                   :: 06/20/2024 03:47:50
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,510
            CDSs (total)                      :: 5,386
            Genes (coding)                    :: 5,245
            CDSs (with protein)               :: 5,245
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 141
            CDSs (without protein)            :: 141
            Pseudo Genes (ambiguous residues) :: 0 of 141
            Pseudo Genes (frameshifted)       :: 55 of 141
            Pseudo Genes (incomplete)         :: 91 of 141
            Pseudo Genes (internal stop)      :: 17 of 141
            Pseudo Genes (multiple problems)  :: 18 of 141
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP048396.1.
            Bacteria and source DNA available from Laboratory of Antimicrobial
            Systems Pharmacology in Biomedicine Discovery Institute, 19
            Innovation Walk , Monash University, Melbourne, Australia.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="S01"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pKPS01_p7"
                     /geo_loc_name="Australia: Melbourne"
                     /collection_date="2016-06"
     gene            join(1378..2058,1..309)
                     /locus_tag="GZH33_RS27460"
                     /old_locus_tag="GZH33_27970"
     CDS             join(1378..2058,1..309)
                     /locus_tag="GZH33_RS27460"
                     /old_locus_tag="GZH33_27970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_040207214.1"
                     /translation="MQNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIEELGETLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPKWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVKKYRRSPTKDKTESD"
                     /name="protein rep"
     gene            863..1054
                     /locus_tag="GZH33_RS27465"
                     /old_locus_tag="GZH33_27975"
     CDS             863..1054
                     /locus_tag="GZH33_RS27465"
                     /old_locus_tag="GZH33_27975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_020324555.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     Typing          complement(36..227)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.446"
                     /coverage="100.0"
                     /evalue="2.86e-91"
ORIGIN
        1 gcgaccgccg aactggtgcg cggcgcagtg gccgaaaccc tgaaatattc cacgaagccg
       61 gccgacatgg tggccgatcc taaatggttc ctcgaactga cccgccagac gcacaagcgc
      121 cgctttgtgg cgaccggcgg cgcactcaaa gacgtgctga aactcgatca ggaaaccgac
      181 gccgacatgg tgatcgggga tgatatttcc gagggcgatg atgacggttc ccgcatcgcg
      241 ttcgagtgga agaccgaggt caaaaagtac cggcgttcgc cgacgaaaga taaaaccgaa
      301 tcagactaac agggtgtcgg ggctgcgccc tgaccatgag ggctttgggc atccgtcacc
      361 ttggtggcgg tgtaccaaag tcacatcttg tccgattgat tttactccga tgcaggatag
      421 ggctaacgcc gcaaagtgac gtcactcgat tactgagttc ggattccgaa cctgggtttt
      481 tcttccggta attttccgga aggcgcgctt agtagtttct catctggcga tgagaaacgc
      541 gcggtggggc aagcccacga aaaacaaaaa ctgataacgg acaagatgtg tttttggagt
      601 accgccatca cgatgccggt accaaaaacg atccgtcagg gctgcgcccc gacaccctgc
      661 caacacctca cgccgccaga ttaaaatctg tcagcgttcg ccgttcccga aatcgtcaaa
      721 cgctaaatcg cggggtcccg ctggcttgcc agtgggttcc gatttagtga ttgacgacag
      781 cacccgtaaa atacttacag ggggtggttg tgatcacgca gtgagcgcaa ccacctgata
      841 agcgtttttt gagggggtag gcatgatcgt cagactggat aaccggctgt ttgagattct
      901 cgatgagatg ggtgcgcatg tggatcggga aatgttcatg gcggcctatg cgcagcggaa
      961 ggccgaaaaa gaaaatgatc cccggcatat ccgtcaacgg aaactgacca ggttggctca
     1021 tgatttgatg tcagaatcgg accctgaatt gtgagcctcg cgtgcgcgcg agggaaatcg
     1081 gtcagaaaat ggccggagtc tcgtgcgcgc gatccttgta tttatactta agggataact
     1141 ctggcgtcaa aaaacgccgc cagcccttgt gccgcaaggg tttgagtgtg atttgcctga
     1201 aaatggtttt ggaagtattc tgtcgggagt ggtcgcagaa aaaagcgacc cccgcaactg
     1261 cgctaacagt tcgggggtgt gaccacctgt aggaattcga atttggacac gacaacacag
     1321 gtgatatggc aatgataaca cgtcaaatga gccatcgccc agcatggggc ggtgtgcatg
     1381 caaaatcctg aactccagaa cctaactgac tactccccct cagatgcgcc gtgggacgct
     1441 cacagaagcg tttctgacga cgtgggaggg atttacctgc ttgcggctga atatgagcgc
     1501 tacggggcgc gtatggcctc ctgtggcggt ttactgaggt ttgggtggtc taccctcaaa
     1561 gaaaccggag aaacgcgcct gaggctgcgt gaggcgcatt tctgccgtgt ccggcactgt
     1621 cctgtctgcc agtggaggcg ctccctgatg tggcaagccc gtttctacca gtccctgccg
     1681 cgtatcgtgg cggattaccc cgattcccgc tggatgtttc tgaccctgac cgtgcgcaac
     1741 tgcgcgatcg aggagctggg cgagacgctg agccggatga acacggcttt ccagcgactg
     1801 aaggaccgta aagagttccg accagttcag ggctggatac gcaccacgga agtcacccgc
     1861 ggcagtgacg gcagcgcaca cccgcacttc cacaccctga tgatggttcc gccgggcatg
     1921 cttaacggga agagttacgt caggcatgaa cgctgggttg agctgtggcg tgagtgcctg
     1981 cgggtcagtt acgatccgaa tgtcgatgtc cgggcagtga aaccccgcaa gccgaaggac
     2041 ggcgaatcgc tggcctgc
//
