LOCUS       NZ_CP048395             2238 bp    DNA     circular CON 20-JUN-2024
DEFINITION  Klebsiella pneumoniae strain S01 plasmid pKPS01_p6, complete
            sequence.
ACCESSION   NZ_CP048395
VERSION     NZ_CP048395.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13968567
            Assembly: GCF_023612215.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2238)
  AUTHORS   Zhu,Y., Lu,J., Zhao,J., Velkov,T. and Li,J.
  TITLE     Whole genome sequencing and genome-scale metabolic modelling of
            NDM-producing MDR Klebsiella pneumoniae S01
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2238)
  AUTHORS   Zhu,Y., Lu,J., Zhao,J., Velkov,T. and Li,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-FEB-2020) Faculty of Medicine, Nursing and Health
            Sciences, Monash University, 19 Innovation Walk, Clayton, VIC 3800,
            Australia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: FADDI_Monash_KPS01_1.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 320.0x
            Sequencing Technology             :: PacBio RSII; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023612215.1-RS_2024_06_20
            Annotation Date                   :: 06/20/2024 03:47:50
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,510
            CDSs (total)                      :: 5,386
            Genes (coding)                    :: 5,245
            CDSs (with protein)               :: 5,245
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 141
            CDSs (without protein)            :: 141
            Pseudo Genes (ambiguous residues) :: 0 of 141
            Pseudo Genes (frameshifted)       :: 55 of 141
            Pseudo Genes (incomplete)         :: 91 of 141
            Pseudo Genes (internal stop)      :: 17 of 141
            Pseudo Genes (multiple problems)  :: 18 of 141
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP048395.1.
            Bacteria and source DNA available from Laboratory of Antimicrobial
            Systems Pharmacology in Biomedicine Discovery Institute, 19
            Innovation Walk , Monash University, Melbourne, Australia.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2238
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="S01"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pKPS01_p6"
                     /geo_loc_name="Australia: Melbourne"
                     /collection_date="2016-06"
     gene            221..370
                     /locus_tag="GZH33_RS27455"
     CDS             221..370
                     /locus_tag="GZH33_RS27455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017880354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001515745.1"
                     /translation="MPSEYDEQRDSTDTQLPGEYDLFDLMAKVTEENLHAPVDFGPPVG
                     REAL"
                     /name="hypothetical protein"
     Typing          14..228
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.789"
                     /coverage="100.0"
                     /evalue="7.02e-98"
     Typing          complement(1785..2238)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="90.81"
                     /coverage="87.0"
                     /evalue="9.83e-170"
ORIGIN
        1 cgcagcgacc gagtgagcga ggaggcgtca tttcatcctt acctgcatgt tgcacttacg
       61 cccggcagcc gcatttttcc ctgtcacatg aagcactttc ataaattacc actccgccgt
      121 aacatattta gccagtatac actccgctag tgctatgtga ctggttcagg gctgcgcccc
      181 gaaacccgct aacaacttct ccgctactgg atatcacccc atgccatctg aatatgatga
      241 acaacgggat tcgactgata cgcagcttcc cggcgaatat gacctttttg atttaatggc
      301 gaaggttact gaagagaacc tgcacgcccc ggtggatttt gggccacctg tcggccgtga
      361 agcgttatag ctttttcgct tgcccgcgta cgtgtaatac gtcggtatta catcttattt
      421 ctttattttc atgtgattac aagtgtttgt aatacgttgc gtattacata aataaacggg
      481 aaattcagtt tttacctttt aattcatgca attgcgatga aaatcgcggt tgcgtatggt
      541 gtatgaccat ttaagggata aaaaatcatc ttttttggta gggcgctctc cgtaggttaa
      601 ggggtatttg gctaaaaagc gtcctattct ttgatggtca tgcaagcatg accatctgag
      661 caaccaaaaa ctacagataa actacaaaaa acgttttgca ttagtgatgg cagactacaa
      721 aaaaactaca aaaaccgtgg cggactacta atagactaca agaaaactac agataaacta
      781 caaagtaact accggattac ctcagatccg ttccctgaac cattcgtaca tcggccccct
      841 tcctgaacgt gctgaaaacg ggttttccgg ctgtgccggc aacgcctcac ggccacgcaa
      901 taaattgcgt ccccgttcac cgttttcggg taagaagaac atcggaaaca ggacttaccc
      961 cggctgaatg gcgtgaattt ccgcgctatg cacttgcgcg catactcatg catgccgtaa
     1021 aaacagagcc tgcgcgtttc tggcgggttt tcgggtggtt tgttgcctgt tttaccggtt
     1081 tcccgtcaga aacgccctga gggcctctca ggcggtgcac gcaagggatg ttatggtaaa
     1141 tctagctgct agggcgattc gcccgccaca tttcccgtta tgatataatc cgagcgacgg
     1201 acgaaagggc aaaaaaaaag aatccgtaag gattcttttt ctcgcctcag tcagcgagtg
     1261 cgaatcgccg actgctgccc gaaaacatgt accgaagttc acgttgtcgt tacttttaaa
     1321 caaggtaatg ttaccccctg ggtgaatcta cgtcaacgtg aaccggtatt ccttattttc
     1381 tatcaaaatg aaggaataaa cgtatggccg aactgcttac ggcgtttatt aaagcaccac
     1441 ttataagcca ggtgctgacc atcattctgt gtctgatctt tgtagtacac agtctcttaa
     1501 attgacgtac cacccataaa aaagccactt atgtggcttt tttatgactc aacagatagg
     1561 tatctgttga atatcgcaga tgatcttctt gagatcattt tcgttgcgtc gtaatctctt
     1621 gctctggaaa cgaaaaaacc gcccagcaag gcggtttttt cgaaggttct cagagcagca
     1681 actctttgaa ccgcggtaac tggcttggag gagcacagtc accaaatctg tcctttcagt
     1741 ttagccttaa cgggcacata acttcaagac taactcctct aaatcagtta tcagtggctg
     1801 ctgccagtgg cgctttgtcg tgtctttccg ggttggactc aagacgatag ttaccggaca
     1861 aggcgcagcg gtcggactga acggggggtt cgtgcataca gtccagcttg gagcgaactg
     1921 cctacccgga actgagtgtc aggcgtggaa tgagacaaac gcggccataa cagcggaatg
     1981 acaccggtaa accgaaaggc aggaacagga gagcgcacga gggagctacc agggggaaac
     2041 gcctgggatc tttatagtcc tgtcgggttt cgccgccact gatttgagcg tcagatttcg
     2101 tgatgcttgt caggggggcg gagcctatgg aaaaacggca acgccgcatc ctttttccgg
     2161 cctcttctga ttttaatgct gcttacttat cccgtgatct gtgagctggt aacgcccgcc
     2221 gcagtctcac ggcaggag
//
