LOCUS       NZ_CP047693             2953 bp    DNA     circular CON 18-DEC-2023
DEFINITION  Serratia marcescens strain C110 plasmid pXQ, complete sequence.
ACCESSION   NZ_CP047693
VERSION     NZ_CP047693.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13840994
            Assembly: GCF_009909425.1
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1  (bases 1 to 2953)
  AUTHORS   Xu,Q.
  TITLE     The clonal dissemination and carbapenem-resistance mechanism of
            Serratia marcescens in a tertiary hospital in Hangzhou, China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2953)
  AUTHORS   Xu,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JAN-2020) Department of Infectious Diseases, Sir Run
            Run Shaw Hospital, School of Medicine, Zhejiang University, East
            Qingchun Road NO. 3, Hangzhou, Zhejiang 310016, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 4.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 316X
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/17/2023 04:08:50
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,314
            CDSs (total)                      :: 5,182
            Genes (coding)                    :: 5,133
            CDSs (with protein)               :: 5,133
            Genes (RNA)                       :: 132
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 22
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 16 of 50
            Pseudo Genes (incomplete)         :: 35 of 50
            Pseudo Genes (internal stop)      :: 8 of 50
            Pseudo Genes (multiple problems)  :: 9 of 50
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP047693.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2953
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="C110"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:615"
                     /plasmid="pXQ"
                     /geo_loc_name="China"
                     /collection_date="2018-06-16"
     gene            complement(join(2663..2953,1..684))
                     /gene="mobV"
                     /locus_tag="GV213_RS26415"
                     /old_locus_tag="GV213_26415"
     CDS             complement(join(2663..2953,1..684))
                     /gene="mobV"
                     /locus_tag="GV213_RS26415"
                     /old_locus_tag="GV213_26415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010657476.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_033995413.1"
                     /translation="MAAYAIMRCKKLATMGSVAAALQHCYRERETPNADAERTPDNEHR
                     AATSTDAAMGRLRELLPEKRRKDAVLAVEYVMTASPEWWAKATPQQQAAFFDQAQGWLA
                     AKYGADRIVTASIHRDEATPHLSAFVVPLTQDGRLSAKEFIGGRDKMRADQTSFAEAVR
                     DLGLERGIEGSRATHQRVQSYYGAIERQPGHATITPQAIEPRVLRKGIFSKDVETPEAV
                     AARVTAAVREGYGPTVAAAAGARQEREKARQAQETARSLRDRLKPVLDALGPLNRDMQA
                     KAAQIIKAVGEKLLAEQREATRQRQAQRLRSRGRDRDDGGLSR"
                     /name="mobV"
     gene            1738..2289
                     /locus_tag="GV213_RS26420"
                     /old_locus_tag="GV213_26420"
     CDS             1738..2289
                     /locus_tag="GV213_RS26420"
                     /old_locus_tag="GV213_26420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001722544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RepA plasmid replication protein"
                     /protein_id="WP_033995415.1"
                     /translation="MQQITVATDAQRRIRQRELAMLDEKEAQEREEARKNKGFTQVYPL
                     GWKRIIELAKGNAGAFGLYSFFAENIDPTCGAVVCDQQFLADKMNVNRRTISRWLSYLE
                     ENRALVRIPVAGKVCAYALDPHEVWKGYDNAKDYAAFVTKTLVNKDGDIRRRIMSMFSG
                     EKQNDDRDPNTIDMFESTPQ"
                     /name="RepA plasmid replication protein"
     gene            2316..2636
                     /locus_tag="GV213_RS26425"
                     /old_locus_tag="GV213_26425"
     CDS             2316..2636
                     /locus_tag="GV213_RS26425"
                     /old_locus_tag="GV213_26425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004028395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MliC family protein"
                     /protein_id="WP_033995417.1"
                     /translation="MKKTFALAAMMAAIAPNLASAADEMIQTKYACEGGKTLDVVYVGD
                     YAVMLQMDELVPLKRAKSASGVRYISASKNYTYELWGKGNDMNLSTHDGGKEQTVLSSC
                     KP"
                     /name="MliC family protein"
ORIGIN
        1 agcggtcacg cgggcggcca cggcctccgg cgtctccacg tccttcgaga aaatcccctt
       61 gcgtagcacc cgcggctcga tggcctgcgg cgtgatggtg gcgtgcccgg gctggcgctc
      121 gatggcgccg tagtagctct ggacgcgctg atgggtggcc cggctgccct cgatgccgcg
      181 ttccagcccg agatccctca ccgcctcggc aaagctggtc tggtcggccc gcatcttgtc
      241 gcggccaccg atgaactcct tggccgacag ccgcccgtcc tgcgtcagcg gcacgacgaa
      301 ggccgacagg tgcggggtgg cctcgtcgcg gtggatgctg gccgtcacga tgcgatccgc
      361 gccgtatttg gccgccagcc agccctgcgc ctggtcgaag aacgcggcct gctgctgggg
      421 cgtggccttg gcccaccatt ccgggctggc cgtcatcacg tattcgaccg ccagcaccgc
      481 gtccttgcgc cgcttctccg gcagcaactc gcgcagccgc cccatcgccg catcggttga
      541 ggtggccgcc cggtgctcgt tgtccggcgt gcgttcggcg tcagcgttgg gcgtttcgcg
      601 ctcgcggtag cagtgctgca acgccgccgc cacgctgccc atcgtcgcca gcttcttgca
      661 tcgcatgatc gcgtaggccg ccatgcctgc ccctcccctt ggtgtccgaa tccggccagt
      721 cggggcagcg caaggcggtg cctccggcgg gccactatca gatgatagtg tactcactag
      781 actttgcgaa gcaaagtcgt gcccgcctgc ggcggttgca gcgcccttcg ggcttgctcc
      841 tgcggcggcc ttcggccttg cccaaagggg ctttgcccct ctggactccc caccctcgcc
      901 gccgggaggc tcggggggca ggggtggcgg gcttcgccct tcgtccctgc ccccactcgc
      961 acaggctggg gcgctgcggt cagcgtcaag ggttcggctt cgcccgcgtc ctcgcccggt
     1021 ccctgcgctt cgctccgggc tgcggcctgc gggcgcgccc ttgaccctgc cctccgctga
     1081 aggcgtcagc cagtggcccg ctggcgtgtc ggaaatcgcc tcatggccgg gtaggaaatt
     1141 tccgacagcg ccggagtgga aggcgggtca agggcgcagg gggtggctgg cgcggcccgc
     1201 agcccgcagg gcgaggacac gggccacccc cggagagcgc agcggccctt gacgcgcctg
     1261 gaacgacccc acgctccccg gtaggggtgc aggagtgaag ggccgcaggc ccgtagcccc
     1321 tgcacccctg ccacgtggcg aacgcggggg gtggcggggg gcagcgccca ccgccccaag
     1381 gctgcgcagc ggccgccgga ggccccccaa acaacgtcac ccggccggtg gccgggtggg
     1441 ccttttccag aggccccgca ggggccgtca gcggggtgcc aaggccgcgt agcggccgcc
     1501 ggcggggcgg cagcccctta gaggagaaag ggggaaatgc taagttattg atttataagg
     1561 atttgtagaa atgcattgag acacataggg tgtcctaacg ttgagacatg catggatgtc
     1621 tcaacaggta gcaaggttga gacgcaaact gtctcgacgt gagacataat ttgtcgtatc
     1681 attgcgactc gaaatggcgc aatgagcgga caaatttccc gactttggag gaaccccatg
     1741 cagcagatca cggtggcgac cgacgcccag cgtcgtatcc gccagcgaga gctggccatg
     1801 ctggacgaga aagaggctca ggagcgcgaa gaggcgcgga agaacaaggg gttcacgcag
     1861 gtgtatccct tgggttggaa gcgcatcatt gagcttgcta aaggcaatgc tggggccttc
     1921 ggcctgtatt cattctttgc tgaaaatatc gacccaacct gcggcgcggt ggtctgcgat
     1981 cagcagtttt tggcagacaa gatgaacgtc aacaggcgga caatcagccg ttggttgtct
     2041 tacctggaag aaaatcgcgc gcttgtccgc atccctgttg ctggcaaggt ttgcgcctat
     2101 gcgctggatc ctcacgaggt ctggaagggc tacgacaacg ccaaggatta cgcagctttc
     2161 gtgaccaaaa ccttggtcaa caaggatggc gatatccgcc gccggatcat gtcgatgttc
     2221 agcggcgaga agcagaacga cgaccgcgac ccgaacacca ttgacatgtt tgaaagcact
     2281 ccccaatgag caacgaaacg aaggagaaaa tctttatgaa aaaaacgttc gctcttgctg
     2341 ccatgatggc ggcaatcgct ccgaatcttg cttcagcagc ggatgagatg atccagacca
     2401 agtacgcttg cgaaggcgga aagacgttgg atgtcgtgta cgtcggagac tatgccgtga
     2461 tgctgcaaat ggatgagctt gtcccactga aacgcgccaa gagcgcatca ggagtgcgct
     2521 acatctccgc tagcaaaaac tacacctacg aactgtgggg taagggcaac gacatgaacc
     2581 tttcgaccca cgatggcggg aaggagcaaa ccgtcctcag tagctgcaag ccataaaccc
     2641 cttccgtcgg ccacctgtag ggtcaacgag acagcccgcc gtcgtcgcga tcccggccgc
     2701 gactgcgaag ccgttgggcc tgccgctggc gtgtcgcctc gcgctgttcg gcgagcagct
     2761 tctcgcccac ggccttgatg atctgggccg ccttggcctg catatcgcga ttaagcggcc
     2821 ccagagcgtc cagaacgggc ttcaggcggt cacgcaggct ccgggctgtc tcctgtgcct
     2881 gccgggcctt ctcgcgctcc tgacgcgctc ctgcggccgc tgcgacggtc gggccatacc
     2941 cttccctgac ggc
//
