LOCUS       NZ_CP047690             2953 bp    DNA     circular CON 18-DEC-2023
DEFINITION  Serratia marcescens strain 1140- plasmid pXQ, complete sequence.
ACCESSION   NZ_CP047690
VERSION     NZ_CP047690.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13840995
            Assembly: GCF_009909385.1
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1  (bases 1 to 2953)
  AUTHORS   Xu,Q.
  TITLE     The clonal dissemination and carbapenem-resistance mechanism of
            Serratia marcescens in a tertiary hospital in Hangzhou, China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2953)
  AUTHORS   Xu,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JAN-2020) Department of Infectious Diseases, Sir Run
            Run Shaw Hospital, School of Medicine, Zhejiang University, East
            Qingchun Road NO. 3, Hangzhou, Zhejiang 310016, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 4.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 311X
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/17/2023 04:20:30
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,317
            CDSs (total)                      :: 5,185
            Genes (coding)                    :: 5,132
            CDSs (with protein)               :: 5,132
            Genes (RNA)                       :: 132
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 22
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 19 of 54
            Pseudo Genes (incomplete)         :: 37 of 54
            Pseudo Genes (internal stop)      :: 7 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP047690.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2953
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="1140-"
                     /isolation_source="body fluid"
                     /host="Homo sapiens"
                     /db_xref="taxon:615"
                     /plasmid="pXQ"
                     /geo_loc_name="China"
                     /collection_date="2018-09-05"
     gene            complement(join(2908..2953,1..929))
                     /gene="mobV"
                     /locus_tag="GV224_RS26425"
                     /old_locus_tag="GV224_26425"
     CDS             complement(join(2908..2953,1..929))
                     /gene="mobV"
                     /locus_tag="GV224_RS26425"
                     /old_locus_tag="GV224_26425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000024818.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_033995413.1"
                     /translation="MAAYAIMRCKKLATMGSVAAALQHCYRERETPNADAERTPDNEHR
                     AATSTDAAMGRLRELLPEKRRKDAVLAVEYVMTASPEWWAKATPQQQAAFFDQAQGWLA
                     AKYGADRIVTASIHRDEATPHLSAFVVPLTQDGRLSAKEFIGGRDKMRADQTSFAEAVR
                     DLGLERGIEGSRATHQRVQSYYGAIERQPGHATITPQAIEPRVLRKGIFSKDVETPEAV
                     AARVTAAVREGYGPTVAAAAGARQEREKARQAQETARSLRDRLKPVLDALGPLNRDMQA
                     KAAQIIKAVGEKLLAEQREATRQRQAQRLRSRGRDRDDGGLSR"
                     /name="mobV"
     gene            1983..2534
                     /locus_tag="GV224_RS26430"
                     /old_locus_tag="GV224_26430"
     CDS             1983..2534
                     /locus_tag="GV224_RS26430"
                     /old_locus_tag="GV224_26430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001722544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RepA plasmid replication protein"
                     /protein_id="WP_033995415.1"
                     /translation="MQQITVATDAQRRIRQRELAMLDEKEAQEREEARKNKGFTQVYPL
                     GWKRIIELAKGNAGAFGLYSFFAENIDPTCGAVVCDQQFLADKMNVNRRTISRWLSYLE
                     ENRALVRIPVAGKVCAYALDPHEVWKGYDNAKDYAAFVTKTLVNKDGDIRRRIMSMFSG
                     EKQNDDRDPNTIDMFESTPQ"
                     /name="RepA plasmid replication protein"
     gene            2561..2881
                     /locus_tag="GV224_RS26435"
                     /old_locus_tag="GV224_26435"
     CDS             2561..2881
                     /locus_tag="GV224_RS26435"
                     /old_locus_tag="GV224_26435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004028395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MliC family protein"
                     /protein_id="WP_033995417.1"
                     /translation="MKKTFALAAMMAAIAPNLASAADEMIQTKYACEGGKTLDVVYVGD
                     YAVMLQMDELVPLKRAKSASGVRYISASKNYTYELWGKGNDMNLSTHDGGKEQTVLSSC
                     KP"
                     /name="MliC family protein"
ORIGIN
        1 agccgttggg cctgccgctg gcgtgtcgcc tcgcgctgtt cggcgagcag cttctcgccc
       61 acggccttga tgatctgggc cgccttggcc tgcatatcgc gattaagcgg ccccagagcg
      121 tccagaacgg gcttcaggcg gtcacgcagg ctccgggctg tctcctgtgc ctgccgggcc
      181 ttctcgcgct cctgacgcgc tcctgcggcc gctgcgacgg tcgggccata cccttccctg
      241 acggcagcgg tcacgcgggc ggccacggcc tccggcgtct ccacgtcctt cgagaaaatc
      301 cccttgcgta gcacccgcgg ctcgatggcc tgcggcgtga tggtggcgtg cccgggctgg
      361 cgctcgatgg cgccgtagta gctctggacg cgctgatggg tggcccggct gccctcgatg
      421 ccgcgttcca gcccgagatc cctcaccgcc tcggcaaagc tggtctggtc ggcccgcatc
      481 ttgtcgcggc caccgatgaa ctccttggcc gacagccgcc cgtcctgcgt cagcggcacg
      541 acgaaggccg acaggtgcgg ggtggcctcg tcgcggtgga tgctggccgt cacgatgcga
      601 tccgcgccgt atttggccgc cagccagccc tgcgcctggt cgaagaacgc ggcctgctgc
      661 tggggcgtgg ccttggccca ccattccggg ctggccgtca tcacgtattc gaccgccagc
      721 accgcgtcct tgcgccgctt ctccggcagc aactcgcgca gccgccccat cgccgcatcg
      781 gttgaggtgg ccgcccggtg ctcgttgtcc ggcgtgcgtt cggcgtcagc gttgggcgtt
      841 tcgcgctcgc ggtagcagtg ctgcaacgcc gccgccacgc tgcccatcgt cgccagcttc
      901 ttgcatcgca tgatcgcgta ggccgccatg cctgcccctc cccttggtgt ccgaatccgg
      961 ccagtcgggg cagcgcaagg cggtgcctcc ggcgggccac tatcagatga tagtgtactc
     1021 actagacttt gcgaagcaaa gtcgtgcccg cctgcggcgg ttgcagcgcc cttcgggctt
     1081 gctcctgcgg cggccttcgg ccttgcccaa aggggctttg cccctctgga ctccccaccc
     1141 tcgccgccgg gaggctcggg gggcaggggt ggcgggcttc gcccttcgtc cctgccccca
     1201 ctcgcacagg ctggggcgct gcggtcagcg tcaagggttc ggcttcgccc gcgtcctcgc
     1261 ccggtccctg cgcttcgctc cgggctgcgg cctgcgggcg cgcccttgac cctgccctcc
     1321 gctgaaggcg tcagccagtg gcccgctggc gtgtcggaaa tcgcctcatg gccgggtagg
     1381 aaatttccga cagcgccgga gtggaaggcg ggtcaagggc gcagggggtg gctggcgcgg
     1441 cccgcagccc gcagggcgag gacacgggcc acccccggag agcgcagcgg cccttgacgc
     1501 gcctggaacg accccacgct ccccggtagg ggtgcaggag tgaagggccg caggcccgta
     1561 gcccctgcac ccctgccacg tggcgaacgc ggggggtggc ggggggcagc gcccaccgcc
     1621 ccaaggctgc gcagcggccg ccggaggccc cccaaacaac gtcacccggc cggtggccgg
     1681 gtgggccttt tccagaggcc ccgcaggggc cgtcagcggg gtgccaaggc cgcgtagcgg
     1741 ccgccggcgg ggcggcagcc ccttagagga gaaaggggga aatgctaagt tattgattta
     1801 taaggatttg tagaaatgca ttgagacaca tagggtgtcc taacgttgag acatgcatgg
     1861 atgtctcaac aggtagcaag gttgagacgc aaactgtctc gacgtgagac ataatttgtc
     1921 gtatcattgc gactcgaaat ggcgcaatga gcggacaaat ttcccgactt tggaggaacc
     1981 ccatgcagca gatcacggtg gcgaccgacg cccagcgtcg tatccgccag cgagagctgg
     2041 ccatgctgga cgagaaagag gctcaggagc gcgaagaggc gcggaagaac aaggggttca
     2101 cgcaggtgta tcccttgggt tggaagcgca tcattgagct tgctaaaggc aatgctgggg
     2161 ccttcggcct gtattcattc tttgctgaaa atatcgaccc aacctgcggc gcggtggtct
     2221 gcgatcagca gtttttggca gacaagatga acgtcaacag gcggacaatc agccgttggt
     2281 tgtcttacct ggaagaaaat cgcgcgcttg tccgcatccc tgttgctggc aaggtttgcg
     2341 cctatgcgct ggatcctcac gaggtctgga agggctacga caacgccaag gattacgcag
     2401 ctttcgtgac caaaaccttg gtcaacaagg atggcgatat ccgccgccgg atcatgtcga
     2461 tgttcagcgg cgagaagcag aacgacgacc gcgacccgaa caccattgac atgtttgaaa
     2521 gcactcccca atgagcaacg aaacgaagga gaaaatcttt atgaaaaaaa cgttcgctct
     2581 tgctgccatg atggcggcaa tcgctccgaa tcttgcttca gcagcggatg agatgatcca
     2641 gaccaagtac gcttgcgaag gcggaaagac gttggatgtc gtgtacgtcg gagactatgc
     2701 cgtgatgctg caaatggatg agcttgtccc actgaaacgc gccaagagcg catcaggagt
     2761 gcgctacatc tccgctagca aaaactacac ctacgaactg tggggtaagg gcaacgacat
     2821 gaacctttcg acccacgatg gcgggaagga gcaaaccgtc ctcagtagct gcaagccata
     2881 aaccccttcc gtcggccacc tgtagggtca acgagacagc ccgccgtcgt cgcgatcccg
     2941 gccgcgactg cga
//
