LOCUS       NZ_CP047687             2953 bp    DNA     circular CON 18-DEC-2023
DEFINITION  Serratia marcescens strain 2838 plasmid pXQ, complete sequence.
ACCESSION   NZ_CP047687
VERSION     NZ_CP047687.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13840996
            Assembly: GCF_009909405.1
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1  (bases 1 to 2953)
  AUTHORS   Xu,Q.
  TITLE     The clonal dissemination and carbapenem-resistance mechanism of
            Serratia marcescens in a tertiary hospital in Hangzhou, China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2953)
  AUTHORS   Xu,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JAN-2020) Department of Infectious Diseases, Sir Run
            Run Shaw Hospital, School of Medicine, Zhejiang University, East
            Qingchun Road NO. 3, Hangzhou, Zhejiang 310016, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 4.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 362X
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/17/2023 03:59:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,303
            CDSs (total)                      :: 5,173
            Genes (coding)                    :: 5,124
            CDSs (with protein)               :: 5,124
            Genes (RNA)                       :: 130
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 20
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 17 of 50
            Pseudo Genes (incomplete)         :: 35 of 50
            Pseudo Genes (internal stop)      :: 8 of 50
            Pseudo Genes (multiple problems)  :: 10 of 50
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP047687.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2953
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="2838"
                     /isolation_source="body fluid"
                     /host="Homo sapiens"
                     /db_xref="taxon:615"
                     /plasmid="pXQ"
                     /geo_loc_name="China"
                     /collection_date="2018-12-17"
     gene            632..1606
                     /gene="mobV"
                     /locus_tag="GV198_RS26355"
                     /old_locus_tag="GV198_26355"
     CDS             632..1606
                     /gene="mobV"
                     /locus_tag="GV198_RS26355"
                     /old_locus_tag="GV198_26355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000024818.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_033995413.1"
                     /translation="MAAYAIMRCKKLATMGSVAAALQHCYRERETPNADAERTPDNEHR
                     AATSTDAAMGRLRELLPEKRRKDAVLAVEYVMTASPEWWAKATPQQQAAFFDQAQGWLA
                     AKYGADRIVTASIHRDEATPHLSAFVVPLTQDGRLSAKEFIGGRDKMRADQTSFAEAVR
                     DLGLERGIEGSRATHQRVQSYYGAIERQPGHATITPQAIEPRVLRKGIFSKDVETPEAV
                     AARVTAAVREGYGPTVAAAAGARQEREKARQAQETARSLRDRLKPVLDALGPLNRDMQA
                     KAAQIIKAVGEKLLAEQREATRQRQAQRLRSRGRDRDDGGLSR"
                     /name="mobV"
     gene            complement(1633..1953)
                     /locus_tag="GV198_RS26360"
                     /old_locus_tag="GV198_26360"
     CDS             complement(1633..1953)
                     /locus_tag="GV198_RS26360"
                     /old_locus_tag="GV198_26360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004028395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MliC family protein"
                     /protein_id="WP_033995417.1"
                     /translation="MKKTFALAAMMAAIAPNLASAADEMIQTKYACEGGKTLDVVYVGD
                     YAVMLQMDELVPLKRAKSASGVRYISASKNYTYELWGKGNDMNLSTHDGGKEQTVLSSC
                     KP"
                     /name="MliC family protein"
     gene            complement(1980..2531)
                     /locus_tag="GV198_RS26365"
                     /old_locus_tag="GV198_26365"
     CDS             complement(1980..2531)
                     /locus_tag="GV198_RS26365"
                     /old_locus_tag="GV198_26365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001722544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RepA plasmid replication protein"
                     /protein_id="WP_033995415.1"
                     /translation="MQQITVATDAQRRIRQRELAMLDEKEAQEREEARKNKGFTQVYPL
                     GWKRIIELAKGNAGAFGLYSFFAENIDPTCGAVVCDQQFLADKMNVNRRTISRWLSYLE
                     ENRALVRIPVAGKVCAYALDPHEVWKGYDNAKDYAAFVTKTLVNKDGDIRRRIMSMFSG
                     EKQNDDRDPNTIDMFESTPQ"
                     /name="RepA plasmid replication protein"
ORIGIN
        1 tacgggcctg cggcccttca ctcctgcacc cctaccgggg agcgtggggt cgttccaggc
       61 gcgtcaaggg ccgctgcgct ctccgggggt ggcccgtgtc ctcgccctgc gggctgcggg
      121 ccgcgccagc caccccctgc gcccttgacc cgccttccac tccggcgctg tcggaaattt
      181 cctacccggc catgaggcga tttccgacac gccagcgggc cactggctga cgccttcagc
      241 ggagggcagg gtcaagggcg cgcccgcagg ccgcagcccg gagcgaagcg cagggaccgg
      301 gcgaggacgc gggcgaagcc gaacccttga cgctgaccgc agcgccccag cctgtgcgag
      361 tgggggcagg gacgaagggc gaagcccgcc acccctgccc cccgagcctc ccggcggcga
      421 gggtggggag tccagagggg caaagcccct ttgggcaagg ccgaaggccg ccgcaggagc
      481 aagcccgaag ggcgctgcaa ccgccgcagg cgggcacgac tttgcttcgc aaagtctagt
      541 gagtacacta tcatctgata gtggcccgcc ggaggcaccg ccttgcgctg ccccgactgg
      601 ccggattcgg acaccaaggg gaggggcagg catggcggcc tacgcgatca tgcgatgcaa
      661 gaagctggcg acgatgggca gcgtggcggc ggcgttgcag cactgctacc gcgagcgcga
      721 aacgcccaac gctgacgccg aacgcacgcc ggacaacgag caccgggcgg ccacctcaac
      781 cgatgcggcg atggggcggc tgcgcgagtt gctgccggag aagcggcgca aggacgcggt
      841 gctggcggtc gaatacgtga tgacggccag cccggaatgg tgggccaagg ccacgcccca
      901 gcagcaggcc gcgttcttcg accaggcgca gggctggctg gcggccaaat acggcgcgga
      961 tcgcatcgtg acggccagca tccaccgcga cgaggccacc ccgcacctgt cggccttcgt
     1021 cgtgccgctg acgcaggacg ggcggctgtc ggccaaggag ttcatcggtg gccgcgacaa
     1081 gatgcgggcc gaccagacca gctttgccga ggcggtgagg gatctcgggc tggaacgcgg
     1141 catcgagggc agccgggcca cccatcagcg cgtccagagc tactacggcg ccatcgagcg
     1201 ccagcccggg cacgccacca tcacgccgca ggccatcgag ccgcgggtgc tacgcaaggg
     1261 gattttctcg aaggacgtgg agacgccgga ggccgtggcc gcccgcgtga ccgctgccgt
     1321 cagggaaggg tatggcccga ccgtcgcagc ggccgcagga gcgcgtcagg agcgcgagaa
     1381 ggcccggcag gcacaggaga cagcccggag cctgcgtgac cgcctgaagc ccgttctgga
     1441 cgctctgggg ccgcttaatc gcgatatgca ggccaaggcg gcccagatca tcaaggccgt
     1501 gggcgagaag ctgctcgccg aacagcgcga ggcgacacgc cagcggcagg cccaacggct
     1561 tcgcagtcgc ggccgggatc gcgacgacgg cgggctgtct cgttgaccct acaggtggcc
     1621 gacggaaggg gtttatggct tgcagctact gaggacggtt tgctccttcc cgccatcgtg
     1681 ggtcgaaagg ttcatgtcgt tgcccttacc ccacagttcg taggtgtagt ttttgctagc
     1741 ggagatgtag cgcactcctg atgcgctctt ggcgcgtttc agtgggacaa gctcatccat
     1801 ttgcagcatc acggcatagt ctccgacgta cacgacatcc aacgtctttc cgccttcgca
     1861 agcgtacttg gtctggatca tctcatccgc tgctgaagca agattcggag cgattgccgc
     1921 catcatggca gcaagagcga acgttttttt cataaagatt ttctccttcg tttcgttgct
     1981 cattggggag tgctttcaaa catgtcaatg gtgttcgggt cgcggtcgtc gttctgcttc
     2041 tcgccgctga acatcgacat gatccggcgg cggatatcgc catccttgtt gaccaaggtt
     2101 ttggtcacga aagctgcgta atccttggcg ttgtcgtagc ccttccagac ctcgtgagga
     2161 tccagcgcat aggcgcaaac cttgccagca acagggatgc ggacaagcgc gcgattttct
     2221 tccaggtaag acaaccaacg gctgattgtc cgcctgttga cgttcatctt gtctgccaaa
     2281 aactgctgat cgcagaccac cgcgccgcag gttgggtcga tattttcagc aaagaatgaa
     2341 tacaggccga aggccccagc attgccttta gcaagctcaa tgatgcgctt ccaacccaag
     2401 ggatacacct gcgtgaaccc cttgttcttc cgcgcctctt cgcgctcctg agcctctttc
     2461 tcgtccagca tggccagctc tcgctggcgg atacgacgct gggcgtcggt cgccaccgtg
     2521 atctgctgca tggggttcct ccaaagtcgg gaaatttgtc cgctcattgc gccatttcga
     2581 gtcgcaatga tacgacaaat tatgtctcac gtcgagacag tttgcgtctc aaccttgcta
     2641 cctgttgaga catccatgca tgtctcaacg ttaggacacc ctatgtgtct caatgcattt
     2701 ctacaaatcc ttataaatca ataacttagc atttccccct ttctcctcta aggggctgcc
     2761 gccccgccgg cggccgctac gcggccttgg caccccgctg acggcccctg cggggcctct
     2821 ggaaaaggcc cacccggcca ccggccgggt gacgttgttt ggggggcctc cggcggccgc
     2881 tgcgcagcct tggggcggtg ggcgctgccc cccgccaccc cccgcgttcg ccacgtggca
     2941 ggggtgcagg ggc
//
