LOCUS       NZ_CP047684             2953 bp    DNA     circular CON 18-DEC-2023
DEFINITION  Serratia marcescens strain 3024 plasmid pXQ, complete sequence.
ACCESSION   NZ_CP047684
VERSION     NZ_CP047684.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13840997
            Assembly: GCF_009909365.1
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1  (bases 1 to 2953)
  AUTHORS   Xu,Q.
  TITLE     The clonal dissemination and carbapenem-resistance mechanism of
            Serratia marcescens in a tertiary hospital in Hangzhou, China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2953)
  AUTHORS   Xu,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JAN-2020) Department of Infectious Diseases, Sir Run
            Run Shaw Hospital, School of Medicine, Zhejiang University, East
            Qingchun Road NO. 3, Hangzhou, Zhejiang 310016, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 4.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 287X
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/17/2023 04:08:32
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,316
            CDSs (total)                      :: 5,184
            Genes (coding)                    :: 5,133
            CDSs (with protein)               :: 5,133
            Genes (RNA)                       :: 132
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 22
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 16 of 52
            Pseudo Genes (incomplete)         :: 37 of 52
            Pseudo Genes (internal stop)      :: 8 of 52
            Pseudo Genes (multiple problems)  :: 9 of 52
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP047684.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2953
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="3024"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:615"
                     /plasmid="pXQ"
                     /geo_loc_name="China"
                     /collection_date="2018-12-25"
     gene            243..1217
                     /gene="mobV"
                     /locus_tag="GV218_RS26430"
                     /old_locus_tag="GV218_26430"
     CDS             243..1217
                     /gene="mobV"
                     /locus_tag="GV218_RS26430"
                     /old_locus_tag="GV218_26430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000024818.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_033995413.1"
                     /translation="MAAYAIMRCKKLATMGSVAAALQHCYRERETPNADAERTPDNEHR
                     AATSTDAAMGRLRELLPEKRRKDAVLAVEYVMTASPEWWAKATPQQQAAFFDQAQGWLA
                     AKYGADRIVTASIHRDEATPHLSAFVVPLTQDGRLSAKEFIGGRDKMRADQTSFAEAVR
                     DLGLERGIEGSRATHQRVQSYYGAIERQPGHATITPQAIEPRVLRKGIFSKDVETPEAV
                     AARVTAAVREGYGPTVAAAAGARQEREKARQAQETARSLRDRLKPVLDALGPLNRDMQA
                     KAAQIIKAVGEKLLAEQREATRQRQAQRLRSRGRDRDDGGLSR"
                     /name="mobV"
     gene            complement(1244..1564)
                     /locus_tag="GV218_RS26435"
                     /old_locus_tag="GV218_26435"
     CDS             complement(1244..1564)
                     /locus_tag="GV218_RS26435"
                     /old_locus_tag="GV218_26435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004028395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MliC family protein"
                     /protein_id="WP_033995417.1"
                     /translation="MKKTFALAAMMAAIAPNLASAADEMIQTKYACEGGKTLDVVYVGD
                     YAVMLQMDELVPLKRAKSASGVRYISASKNYTYELWGKGNDMNLSTHDGGKEQTVLSSC
                     KP"
                     /name="MliC family protein"
     gene            complement(1591..2142)
                     /locus_tag="GV218_RS26440"
                     /old_locus_tag="GV218_26440"
     CDS             complement(1591..2142)
                     /locus_tag="GV218_RS26440"
                     /old_locus_tag="GV218_26440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001722544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RepA plasmid replication protein"
                     /protein_id="WP_033995415.1"
                     /translation="MQQITVATDAQRRIRQRELAMLDEKEAQEREEARKNKGFTQVYPL
                     GWKRIIELAKGNAGAFGLYSFFAENIDPTCGAVVCDQQFLADKMNVNRRTISRWLSYLE
                     ENRALVRIPVAGKVCAYALDPHEVWKGYDNAKDYAAFVTKTLVNKDGDIRRRIMSMFSG
                     EKQNDDRDPNTIDMFESTPQ"
                     /name="RepA plasmid replication protein"
ORIGIN
        1 cacccctgcc ccccgagcct cccggcggcg agggtgggga gtccagaggg gcaaagcccc
       61 tttgggcaag gccgaaggcc gccgcaggag caagcccgaa gggcgctgca accgccgcag
      121 gcgggcacga ctttgcttcg caaagtctag tgagtacact atcatctgat agtggcccgc
      181 cggaggcacc gccttgcgct gccccgactg gccggattcg gacaccaagg ggaggggcag
      241 gcatggcggc ctacgcgatc atgcgatgca agaagctggc gacgatgggc agcgtggcgg
      301 cggcgttgca gcactgctac cgcgagcgcg aaacgcccaa cgctgacgcc gaacgcacgc
      361 cggacaacga gcaccgggcg gccacctcaa ccgatgcggc gatggggcgg ctgcgcgagt
      421 tgctgccgga gaagcggcgc aaggacgcgg tgctggcggt cgaatacgtg atgacggcca
      481 gcccggaatg gtgggccaag gccacgcccc agcagcaggc cgcgttcttc gaccaggcgc
      541 agggctggct ggcggccaaa tacggcgcgg atcgcatcgt gacggccagc atccaccgcg
      601 acgaggccac cccgcacctg tcggccttcg tcgtgccgct gacgcaggac gggcggctgt
      661 cggccaagga gttcatcggt ggccgcgaca agatgcgggc cgaccagacc agctttgccg
      721 aggcggtgag ggatctcggg ctggaacgcg gcatcgaggg cagccgggcc acccatcagc
      781 gcgtccagag ctactacggc gccatcgagc gccagcccgg gcacgccacc atcacgccgc
      841 aggccatcga gccgcgggtg ctacgcaagg ggattttctc gaaggacgtg gagacgccgg
      901 aggccgtggc cgcccgcgtg accgctgccg tcagggaagg gtatggcccg accgtcgcag
      961 cggccgcagg agcgcgtcag gagcgcgaga aggcccggca ggcacaggag acagcccgga
     1021 gcctgcgtga ccgcctgaag cccgttctgg acgctctggg gccgcttaat cgcgatatgc
     1081 aggccaaggc ggcccagatc atcaaggccg tgggcgagaa gctgctcgcc gaacagcgcg
     1141 aggcgacacg ccagcggcag gcccaacggc ttcgcagtcg cggccgggat cgcgacgacg
     1201 gcgggctgtc tcgttgaccc tacaggtggc cgacggaagg ggtttatggc ttgcagctac
     1261 tgaggacggt ttgctccttc ccgccatcgt gggtcgaaag gttcatgtcg ttgcccttac
     1321 cccacagttc gtaggtgtag tttttgctag cggagatgta gcgcactcct gatgcgctct
     1381 tggcgcgttt cagtgggaca agctcatcca tttgcagcat cacggcatag tctccgacgt
     1441 acacgacatc caacgtcttt ccgccttcgc aagcgtactt ggtctggatc atctcatccg
     1501 ctgctgaagc aagattcgga gcgattgccg ccatcatggc agcaagagcg aacgtttttt
     1561 tcataaagat tttctccttc gtttcgttgc tcattgggga gtgctttcaa acatgtcaat
     1621 ggtgttcggg tcgcggtcgt cgttctgctt ctcgccgctg aacatcgaca tgatccggcg
     1681 gcggatatcg ccatccttgt tgaccaaggt tttggtcacg aaagctgcgt aatccttggc
     1741 gttgtcgtag cccttccaga cctcgtgagg atccagcgca taggcgcaaa ccttgccagc
     1801 aacagggatg cggacaagcg cgcgattttc ttccaggtaa gacaaccaac ggctgattgt
     1861 ccgcctgttg acgttcatct tgtctgccaa aaactgctga tcgcagacca ccgcgccgca
     1921 ggttgggtcg atattttcag caaagaatga atacaggccg aaggccccag cattgccttt
     1981 agcaagctca atgatgcgct tccaacccaa gggatacacc tgcgtgaacc ccttgttctt
     2041 ccgcgcctct tcgcgctcct gagcctcttt ctcgtccagc atggccagct ctcgctggcg
     2101 gatacgacgc tgggcgtcgg tcgccaccgt gatctgctgc atggggttcc tccaaagtcg
     2161 ggaaatttgt ccgctcattg cgccatttcg agtcgcaatg atacgacaaa ttatgtctca
     2221 cgtcgagaca gtttgcgtct caaccttgct acctgttgag acatccatgc atgtctcaac
     2281 gttaggacac cctatgtgtc tcaatgcatt tctacaaatc cttataaatc aataacttag
     2341 catttccccc tttctcctct aaggggctgc cgccccgccg gcggccgcta cgcggccttg
     2401 gcaccccgct gacggcccct gcggggcctc tggaaaaggc ccacccggcc accggccggg
     2461 tgacgttgtt tggggggcct ccggcggccg ctgcgcagcc ttggggcggt gggcgctgcc
     2521 ccccgccacc ccccgcgttc gccacgtggc aggggtgcag gggctacggg cctgcggccc
     2581 ttcactcctg cacccctacc ggggagcgtg gggtcgttcc aggcgcgtca agggccgctg
     2641 cgctctccgg gggtggcccg tgtcctcgcc ctgcgggctg cgggccgcgc cagccacccc
     2701 ctgcgccctt gacccgcctt ccactccggc gctgtcggaa atttcctacc cggccatgag
     2761 gcgatttccg acacgccagc gggccactgg ctgacgcctt cagcggaggg cagggtcaag
     2821 ggcgcgcccg caggccgcag cccggagcga agcgcaggga ccgggcgagg acgcgggcga
     2881 agccgaaccc ttgacgctga ccgcagcgcc ccagcctgtg cgagtggggg cagggacgaa
     2941 gggcgaagcc cgc
//
