LOCUS       NZ_CP047681             2953 bp    DNA     circular CON 18-DEC-2023
DEFINITION  Serratia marcescens strain 4201 plasmid pXQ, complete sequence.
ACCESSION   NZ_CP047681
VERSION     NZ_CP047681.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13840998
            Assembly: GCF_009909345.1
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1  (bases 1 to 2953)
  AUTHORS   Xu,Q.
  TITLE     The clonal dissemination and carbapenem-resistance mechanism of
            Serratia marcescens in a tertiary hospital in Hangzhou, China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2953)
  AUTHORS   Xu,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JAN-2020) Department of Infectious Diseases, Sir Run
            Run Shaw Hospital, School of Medicine, Zhejiang University, East
            Qingchun Road NO. 3, Hangzhou, Zhejiang 310016, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 4.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 320X
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/17/2023 04:27:09
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,232
            CDSs (total)                      :: 5,104
            Genes (coding)                    :: 5,053
            CDSs (with protein)               :: 5,053
            Genes (RNA)                       :: 128
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 94
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 22 of 53
            Pseudo Genes (incomplete)         :: 34 of 53
            Pseudo Genes (internal stop)      :: 9 of 53
            Pseudo Genes (multiple problems)  :: 13 of 53
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP047681.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2953
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="4201"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:615"
                     /plasmid="pXQ"
                     /geo_loc_name="China"
                     /collection_date="2019-02-27"
     gene            931..1905
                     /gene="mobV"
                     /locus_tag="GV243_RS25930"
                     /old_locus_tag="GV243_25930"
     CDS             931..1905
                     /gene="mobV"
                     /locus_tag="GV243_RS25930"
                     /old_locus_tag="GV243_25930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000024818.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_033995413.1"
                     /translation="MAAYAIMRCKKLATMGSVAAALQHCYRERETPNADAERTPDNEHR
                     AATSTDAAMGRLRELLPEKRRKDAVLAVEYVMTASPEWWAKATPQQQAAFFDQAQGWLA
                     AKYGADRIVTASIHRDEATPHLSAFVVPLTQDGRLSAKEFIGGRDKMRADQTSFAEAVR
                     DLGLERGIEGSRATHQRVQSYYGAIERQPGHATITPQAIEPRVLRKGIFSKDVETPEAV
                     AARVTAAVREGYGPTVAAAAGARQEREKARQAQETARSLRDRLKPVLDALGPLNRDMQA
                     KAAQIIKAVGEKLLAEQREATRQRQAQRLRSRGRDRDDGGLSR"
                     /name="mobV"
     gene            complement(1932..2282)
                     /locus_tag="GV243_RS25935"
                     /old_locus_tag="GV243_25935"
     CDS             complement(1932..2282)
                     /locus_tag="GV243_RS25935"
                     /old_locus_tag="GV243_25935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004028395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MliC family protein"
                     /protein_id="WP_077265610.1"
                     /translation="MSNETKEKIFMKKTFALAAMMAAIAPNLASAADEMIQTKYACEGG
                     KTLDVVYVGDYAVMLQMDELVPLKRAKSASGVRYISASKNYTYELWGKGNDMNLSTHDG
                     GKEQTVLSSCKP"
                     /name="MliC family protein"
     gene            complement(2279..2830)
                     /locus_tag="GV243_RS25940"
                     /old_locus_tag="GV243_25940"
     CDS             complement(2279..2830)
                     /locus_tag="GV243_RS25940"
                     /old_locus_tag="GV243_25940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001722544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RepA plasmid replication protein"
                     /protein_id="WP_033995415.1"
                     /translation="MQQITVATDAQRRIRQRELAMLDEKEAQEREEARKNKGFTQVYPL
                     GWKRIIELAKGNAGAFGLYSFFAENIDPTCGAVVCDQQFLADKMNVNRRTISRWLSYLE
                     ENRALVRIPVAGKVCAYALDPHEVWKGYDNAKDYAAFVTKTLVNKDGDIRRRIMSMFSG
                     EKQNDDRDPNTIDMFESTPQ"
                     /name="RepA plasmid replication protein"
ORIGIN
        1 catgcatgtc tcaacgttag gacaccctat gtgtctcaat gcatttctac aaatccttat
       61 aaatcaataa cttagcattt ccccctttct cctctaaggg gctgccgccc cgccggcggc
      121 cgctacgcgg ccttggcacc ccgctgacgg cccctgcggg gcctctggaa aaggcccacc
      181 cggccaccgg ccgggtgacg ttgtttgggg ggcctccggc ggccgctgcg cagccttggg
      241 gcggtgggcg ctgccccccg ccaccccccg cgttcgccac gtggcagggg tgcaggggct
      301 acgggcctgc ggcccttcac tcctgcaccc ctaccgggga gcgtggggtc gttccaggcg
      361 cgtcaagggc cgctgcgctc tccgggggtg gcccgtgtcc tcgccctgcg ggctgcgggc
      421 cgcgccagcc accccctgcg cccttgaccc gccttccact ccggcgctgt cggaaatttc
      481 ctacccggcc atgaggcgat ttccgacacg ccagcgggcc actggctgac gccttcagcg
      541 gagggcaggg tcaagggcgc gcccgcaggc cgcagcccgg agcgaagcgc agggaccggg
      601 cgaggacgcg ggcgaagccg aacccttgac gctgaccgca gcgccccagc ctgtgcgagt
      661 gggggcaggg acgaagggcg aagcccgcca cccctgcccc ccgagcctcc cggcggcgag
      721 ggtggggagt ccagaggggc aaagcccctt tgggcaaggc cgaaggccgc cgcaggagca
      781 agcccgaagg gcgctgcaac cgccgcaggc gggcacgact ttgcttcgca aagtctagtg
      841 agtacactat catctgatag tggcccgccg gaggcaccgc cttgcgctgc cccgactggc
      901 cggattcgga caccaagggg aggggcaggc atggcggcct acgcgatcat gcgatgcaag
      961 aagctggcga cgatgggcag cgtggcggcg gcgttgcagc actgctaccg cgagcgcgaa
     1021 acgcccaacg ctgacgccga acgcacgccg gacaacgagc accgggcggc cacctcaacc
     1081 gatgcggcga tggggcggct gcgcgagttg ctgccggaga agcggcgcaa ggacgcggtg
     1141 ctggcggtcg aatacgtgat gacggccagc ccggaatggt gggccaaggc cacgccccag
     1201 cagcaggccg cgttcttcga ccaggcgcag ggctggctgg cggccaaata cggcgcggat
     1261 cgcatcgtga cggccagcat ccaccgcgac gaggccaccc cgcacctgtc ggccttcgtc
     1321 gtgccgctga cgcaggacgg gcggctgtcg gccaaggagt tcatcggtgg ccgcgacaag
     1381 atgcgggccg accagaccag ctttgccgag gcggtgaggg atctcgggct ggaacgcggc
     1441 atcgagggca gccgggccac ccatcagcgc gtccagagct actacggcgc catcgagcgc
     1501 cagcccgggc acgccaccat cacgccgcag gccatcgagc cgcgggtgct acgcaagggg
     1561 attttctcga aggacgtgga gacgccggag gccgtggccg cccgcgtgac cgctgccgtc
     1621 agggaagggt atggcccgac cgtcgcagcg gccgcaggag cgcgtcagga gcgcgagaag
     1681 gcccggcagg cacaggagac agcccggagc ctgcgtgacc gcctgaagcc cgttctggac
     1741 gctctggggc cgcttaatcg cgatatgcag gccaaggcgg cccagatcat caaggccgtg
     1801 ggcgagaagc tgctcgccga acagcgcgag gcgacacgcc agcggcaggc ccaacggctt
     1861 cgcagtcgcg gccgggatcg cgacgacggc gggctgtctc gttgacccta caggtggccg
     1921 acggaagggg tttatggctt gcagctactg aggacggttt gctccttccc gccatcgtgg
     1981 gtcgaaaggt tcatgtcgtt gcccttaccc cacagttcgt aggtgtagtt tttgctagcg
     2041 gagatgtagc gcactcctga tgcgctcttg gcgcgtttca gtgggacaag ctcatccatt
     2101 tgcagcatca cggcatagtc tccgacgtac acgacatcca acgtctttcc gccttcgcaa
     2161 gcgtacttgg tctggatcat ctcatccgct gctgaagcaa gattcggagc gattgccgcc
     2221 atcatggcag caagagcgaa cgtttttttc ataaagattt tctccttcgt ttcgttgctc
     2281 attggggagt gctttcaaac atgtcaatgg tgttcgggtc gcggtcgtcg ttctgcttct
     2341 cgccgctgaa catcgacatg atccggcggc ggatatcgcc atccttgttg accaaggttt
     2401 tggtcacgaa agctgcgtaa tccttggcgt tgtcgtagcc cttccagacc tcgtgaggat
     2461 ccagcgcata ggcgcaaacc ttgccagcaa cagggatgcg gacaagcgcg cgattttctt
     2521 ccaggtaaga caaccaacgg ctgattgtcc gcctgttgac gttcatcttg tctgccaaaa
     2581 actgctgatc gcagaccacc gcgccgcagg ttgggtcgat attttcagca aagaatgaat
     2641 acaggccgaa ggccccagca ttgcctttag caagctcaat gatgcgcttc caacccaagg
     2701 gatacacctg cgtgaacccc ttgttcttcc gcgcctcttc gcgctcctga gcctctttct
     2761 cgtccagcat ggccagctct cgctggcgga tacgacgctg ggcgtcggtc gccaccgtga
     2821 tctgctgcat ggggttcctc caaagtcggg aaatttgtcc gctcattgcg ccatttcgag
     2881 tcgcaatgat acgacaaatt atgtctcacg tcgagacagt ttgcgtctca accttgctac
     2941 ctgttgagac atc
//
