LOCUS       NZ_CP045616             2751 bp    DNA     circular CON 24-OCT-2023
DEFINITION  Bacteroides xylanisolvens strain funn3 plasmid pFunn3_4, complete
            sequence.
ACCESSION   NZ_CP045616
VERSION     NZ_CP045616.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13118627
            Assembly: GCF_016864215.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides xylanisolvens
  ORGANISM  Bacteroides xylanisolvens
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1  (bases 1 to 2751)
  AUTHORS   Sydenham,T.V. and Justesen,U.S.
  TITLE     Sequencing of metronidazole-resistant strain B. xylanisolvens funn3
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2751)
  AUTHORS   Sydenham,T.V. and Justesen,U.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2019) Department of Clinical Microbiology, Odense
            University Hospital, J.B. Winsloews Vej 21,2, Odense C 5000, Denmark
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2019
            Assembly Method :: Unicycler v. Unicycler 0.4.7; manual finishing v.
            2019
            Assembly Name                     :: OUH_B_xylani_funn3_2.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/24/2023 03:06:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,372
            CDSs (total)                      :: 5,279
            Genes (coding)                    :: 5,147
            CDSs (with protein)               :: 5,147
            Genes (RNA)                       :: 93
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 76
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 132
            CDSs (without protein)            :: 132
            Pseudo Genes (ambiguous residues) :: 0 of 132
            Pseudo Genes (frameshifted)       :: 28 of 132
            Pseudo Genes (incomplete)         :: 83 of 132
            Pseudo Genes (internal stop)      :: 41 of 132
            Pseudo Genes (multiple problems)  :: 19 of 132
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP045616.1.
            Bacteria and source DNA available from Ulrik S. Justesen.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2751
                     /organism="Bacteroides xylanisolvens"
                     /mol_type="genomic DNA"
                     /strain="funn3"
                     /isolation_source="Abscess"
                     /host="Homo sapiens"
                     /db_xref="taxon:371601"
                     /plasmid="pFunn3_4"
                     /geo_loc_name="Norway:Oslo"
                     /lat_lon="59.9127 N 10.7461 E"
                     /collection_date="2013"
                     /collected_by="Nina Handal and Truls Michael Leegaard"
     gene            64..654
                     /locus_tag="GFH35_RS26710"
                     /old_locus_tag="GFH35_27445"
     CDS             64..654
                     /locus_tag="GFH35_RS26710"
                     /old_locus_tag="GFH35_27445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295513.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_004295513.1"
                     /translation="MENKKAVKLTDFQKNEENPFMKQAIEGIENHVVKKYKSNSGGDKR
                     AVVALADTETGEVFKTSFIRQIEVDEEQFTKLYLSNFAAFFDLSQAAIRVFGYFMTCMK
                     PKNDLIIFNRKKCLEYTKYKTDKAVYKGLAELVKAEIIARGPADNLWFINPLIVFNGDR
                     VTFAKTYVRKKTLAAQKKEEAEKRQLSLGFDEQ"
                     /name="replication/maintenance protein RepL"
     gene            1273..2376
                     /locus_tag="GFH35_RS26715"
                     /old_locus_tag="GFH35_27460"
     CDS             1273..2376
                     /locus_tag="GFH35_RS26715"
                     /old_locus_tag="GFH35_27460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid recombination protein"
                     /protein_id="WP_007219893.1"
                     /translation="MGATSIHVQAVKPGSEIHNFREKELDYVRPELSHLNESWVGDSIS
                     HRLESAKQRYLDTVGQKMQAKAAPIREGVIVIKQETTMQELQQFATVCKERFGIEAFQI
                     HIHKDEGYMNAKQWTPNLHAHVVFDWTQPNGKSVRLSRDDMAELQTIASETLGMERGVS
                     SDRKHLSAMQYKTECAKEQLQELSNDISSALDKHKDVQNQLLQLQKELRSIETKKNVQK
                     LISKASEKFYGLIGKTVNDREKDALKAKVKALEGENEQLSDRLGKAILEKEQNGTKAFK
                     AENDKEYYRQQMDNARTTSNRLRTENQELKTETKELKKELGKMKDLFNSEQLEALRHHF
                     PNISKAMEEGKDLLKQITRSRGFGMGM"
                     /name="plasmid recombination protein"
     Typing          32..644
                     /name="rep_cluster_1868"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.701"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          1274..2373
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.275"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttgtttttat ggaaaataat agtttacttt gtggagaata atatttccca aaaacacatc
       61 aaaatggaaa ataaaaaagc agttaagtta accgattttc aaaagaacga agaaaatcct
      121 tttatgaaac aagctataga aggtattgaa aatcatgttg ttaaaaagta taagagtaat
      181 agtggtggcg ataagagagc cgtagtagct ttagccgaca ctgaaactgg agaagtgttt
      241 aagacttcgt ttatccgtca aatagaagta gatgaagaac aattcactaa attgtatctt
      301 tctaactttg ctgcattctt tgacctatca caagcagcta ttcgggtttt tggttacttt
      361 atgacctgca tgaaacccaa aaatgattta atcatcttca atagaaaaaa atgcctagaa
      421 tataccaaat acaaaacaga caaagccgtt tataaaggac ttgcagaact tgtaaaagct
      481 gaaatcatag cccgaggacc agccgataat ctttggttta ttaatcctct gatagtattc
      541 aatggtgacc gagtgacatt tgctaaaaca tacgttcgga aaaagacttt agctgcccaa
      601 aagaaagaag aagcagagaa acgacaatta tcacttggct ttgatgaaca gtaacactcc
      661 attgagtgaa gctgccgttt ggtcgctccc cctttggggg cggggggggg atagataaag
      721 ttcctctatg taaagttata atgggggatg aaaggcaagg ttcgctaacc ttaccccgat
      781 tgtttatgct tcccagcatt caatctatcc ccgtttatgg gtttctcttt caccctacaa
      841 agataacctc atgggggaaa aatgtccaag aatatggggt aaaaactatc aagtcggtag
      901 aaaataagta tctttgaagt acatttttag tagaggtact ggtatgccta gacgaagcag
      961 ataggcaaaa ataaagccgc tggagatgtc ggatgtccgt caattaactc cagcggcttg
     1021 tattttggta actctcccgt atcggtcggc taccgtttgg tcagcaacaa aggtagtact
     1081 ttattgtcgc aaatccaaat gttttcccct ttatttgtgc atttacagaa catttgctaa
     1141 cttcgcacct atgcagtatg gtgatagcac actagcaccc taaagggtgc gtgtgtaagg
     1201 ggacaagccc ccttaacccc ctgtcagccg gctgtcaccg gctgttatcg attgtcacaa
     1261 aaatgttaac ttatgggagc aacaagtatt catgtacaag cagtgaagcc ggggagtgag
     1321 attcacaact ttagggaaaa agagttggac tatgttcgtc ccgaacttag tcatttgaat
     1381 gaaagctggg ttggagatag catctcccat cggctggaaa gtgcgaaaca aagatatctc
     1441 gatacggttg ggcagaagat gcaggctaaa gccgcaccca tacgagaggg agtaatagta
     1501 atcaaacaag aaaccaccat gcaggaactc cagcagtttg ccacggtctg caaagaacgt
     1561 ttcggtatcg aagcatttca aatccatata cacaaggacg aaggatacat gaacgcaaag
     1621 caatggacac ctaaccttca tgcccatgta gttttcgatt ggacgcagcc gaatgggaaa
     1681 agtgtgcgtt tatcgcgtga tgacatggca gaactccaaa ccatagcatc tgaaacactg
     1741 ggcatggaac gtggcgtttc ttctgaccgc aaacacttat cggctatgca gtacaagacc
     1801 gaatgtgcga aagaacagct tcaggaacta tcaaacgata tatccagtgc attagacaaa
     1861 cacaaggacg tacaaaacca gcttcttcag cttcagaaag aactacgttc cattgaaaca
     1921 aagaagaacg tccaaaaact catttctaag gcttcagaga agttttacgg cttgattgga
     1981 aaaacagtca acgataggga aaaggatgcc ttaaaagcca aagtaaaggc tttagagggg
     2041 gaaaatgaac agctatccga tagactggga aaggctatac ttgaaaaaga gcaaaacggc
     2101 acaaaggcat tcaaagccga gaatgacaag gagtattata gacaacaaat ggacaacgca
     2161 aggacaacca gtaaccgatt aaggacggag aaccaagaac taaagaccga aaccaaggaa
     2221 ttgaaaaaag aacttggtaa gatgaaagac ttgttcaatt ccgaacaact ggaggcttta
     2281 aggcatcatt tcccaaacat atcaaaagct atggaagagg ggaaagacct actcaagcaa
     2341 atcaccagaa gcagaggttt cggtatgggt atgtaacccc cccccgcccc caaaggggga
     2401 gcgaccaaac ggcagcctct ctcaatggag tgttacgtcg ttcggattcg gaagaaattt
     2461 tgcagggttc ggaaaacggt tgtgtgctta ttctaaaaaa agtttatggt gtggcgctcg
     2521 tcgggacggg tggtcccgcc ccttgccgct gggcgctccc cgaccgatga tttttaagtg
     2581 actgattttg tgctgttttg ggggtatatt aagaatagaa gaaatagaat aagttaagta
     2641 cttgatacac aatatagggc attttccata ttggaaattc tcattttcca atctagaaaa
     2701 tactgatttc ctaatataat actaaacagg aaaataatat ttcccttaat a
//
