LOCUS       NZ_CP045445             2989 bp    DNA     circular CON 18-JUL-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Schwarzengrund strain
            9355 plasmid p2_9355, complete sequence.
ACCESSION   NZ_CP045445
VERSION     NZ_CP045445.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13031563
            Assembly: GCF_009388185.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Schwarzengrund
  ORGANISM  Salmonella enterica subsp. enterica serovar Schwarzengrund
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2989)
  AUTHORS   Galetti,R., Penha Filho,R.A.C., Ferreira,J.C., Varani,A.M.,
            Sazinas,P., Jelsbak,L. and Darini,A.L.C.
  TITLE     The plasmidome of multidrug-resistant emergent Salmonella serovars
            isolated from poultry
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2989)
  AUTHORS   Galetti,R., Penha Filho,R.A.C., Ferreira,J.C., Varani,A.M.,
            Sazinas,P., Jelsbak,L. and Darini,A.L.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-OCT-2019) Biociencias Aplicadas a Farmacia, Faculdade
            de Ciencias Farmaceuticas de Ribeirao Preto, Avenida do Cafe, s/n,
            Ribeirao Preto, Sao Paulo 14040-903, Brazil
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 140x
            Sequencing Technology             :: Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/18/2023 02:42:12
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,789
            CDSs (total)                      :: 4,673
            Genes (coding)                    :: 4,545
            CDSs (with protein)               :: 4,545
            Genes (RNA)                       :: 116
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 80
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 128
            CDSs (without protein)            :: 128
            Pseudo Genes (ambiguous residues) :: 0 of 128
            Pseudo Genes (frameshifted)       :: 53 of 128
            Pseudo Genes (incomplete)         :: 91 of 128
            Pseudo Genes (internal stop)      :: 21 of 128
            Pseudo Genes (multiple problems)  :: 35 of 128
            Pseudo Genes (short protein)      :: 1 of 128
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP045445.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2989
                     /organism="Salmonella enterica subsp. enterica serovar
                     Schwarzengrund"
                     /mol_type="genomic DNA"
                     /strain="9355"
                     /serovar="Schwarzengrund"
                     /isolation_source="cloacal swabs"
                     /host="poultry"
                     /sub_species="enterica"
                     /db_xref="taxon:340190"
                     /plasmid="p2_9355"
                     /geo_loc_name="Brazil"
                     /lat_lon="23.5475 S 46.63611 W"
                     /collection_date="2013"
                     /collected_by="JCF"
     gene            complement(779..928)
                     /locus_tag="GEO45_RS24225"
     CDS             complement(779..928)
                     /locus_tag="GEO45_RS24225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017880354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_162846302.1"
                     /translation="MPSEYDEQRGSTDTQLPGEYDLFDLMAKVTEEILHAPVDSGPPVG
                     REAL"
                     /name="hypothetical protein"
     gene            <1866..2021
                     /locus_tag="GEO45_RS22625"
                     /old_locus_tag="GEO45_22615"
                     /pseudo=""
     CDS             <1866..2021
                     /locus_tag="GEO45_RS22625"
                     /old_locus_tag="GEO45_22615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707212.3"
                     /GO_function="GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /name="helix-turn-helix domain-containing protein"
     gene            2115..2759
                     /locus_tag="GEO45_RS22630"
                     /old_locus_tag="GEO45_22620"
     CDS             2115..2759
                     /locus_tag="GEO45_RS22630"
                     /old_locus_tag="GEO45_22620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017900990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrB19"
                     /protein_id="WP_012954666.1"
                     /translation="MTLALVGEKIDRNRFTGEKVENSTFFNCDFSGADLSGTEFIGCQF
                     YDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNVSALGIEIRHCRAQGADFRGASFMNM
                     ITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWMGTQVLGATFSGSDLSGGEFST
                     FDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDSYQASLLMERLGIAVIG"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrB19"
     ARG             2116..2756
                     /name="qnrB19"
                     /gene="qnrB19"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrB19"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          complement(964..1137)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          1116..1607
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.51"
                     /coverage="81.0"
                     /evalue="0.0"
ORIGIN
        1 cccttgcgtg caccgcctga gaggctctga gggcgtttct gacgggaaac cggtaaaaca
       61 ggcaacaaac cacccgaaaa cccgccagaa acgcgcaggc tctgttttta cggcatgcat
      121 gagtatgcgc gcaagtgcat agcgcggaaa ttcacaccat tcagccaggg gaagtcctgt
      181 ttccggcgtt cttcccatcc gaaaacggtg aacggggacg caatttattg cgtggccgtg
      241 aagcgttgcc ggcgcagccg gaaaacccgc tgtcagcacg ttcaggaagg gggtgatgta
      301 caaatggcac agaggatgaa agtgacgtat gagctgaagg aatgatgtaa aagtgatgta
      361 taaatgatgt aaaagtgatg caaaagtgtt gtaaaagtga tgtacaggcc gaaggagtgt
      421 tgtaaaagtg ttgtaaaagt gatgtatgaa ctgaaggagc gatgtaattc tgtagtcagg
      481 aagaataacc cgttcatgca ggcatgaacg atacagtgag gaacgctttt ttttgtcacg
      541 atctcccctt aacctgcgta aatcacccgc catggttgat tatttttcaa cctcaaaatg
      601 gtcatacacc taacgcagcc gcgattttca tcgcaactgc atgaattaaa agaaaaaaaa
      661 gtaatgtttc gttttcacga gtaataccca ggtattaaaa acccactgta attacatgaa
      721 aataaagaaa taaaaggtaa taccggcgta ttaccacgta cgcgggcaag cgaaaaagct
      781 ataacgcttc ccggccgaca ggcggcccag aatccacagg ggcatgcagg atctcttcag
      841 taaccttcgc cattaaatca aaaaggtcat attcgccggg aagctgcgta tcagtcgaac
      901 cccgttgttc atcatattca gatggcatgg ggtgatatcc agtagcagag aggttgttag
      961 cgggtttcgg ggcgcagccc tgaaccagtc acgtagcgct agcggagtgt atactggctg
     1021 actatgttgg cacggatgtg gaaatcagtg aagtgcttca tgtagcagga gaaaaaaggc
     1081 ggcaccagcg cgtcagcagg atatgtagta caggatatat tccgcttcct cgctcactga
     1141 ctcgctgcgc tcggtcgttc ggctgcggcg agcggtgccg gcttacaggc ggggcggaaa
     1201 tttcctggga gataccagga aggagcttaa cagggaagag ataaggccgc ggcgaagccg
     1261 tttttccata ggctccgccc ccctgacaaa catcatgaaa tctgacgctc aaatcagtgg
     1321 tggcgaaacc cgatgcggct taaagatacc aggcgtttcc ccctggtggc tccctcgtgc
     1381 tcccccgcat tcctgccttt cggtttaccg gtgtcattcc gctgttatgg ccgcgtttat
     1441 ctcattccac gcctgacact cagttccgcg aaggcagttc gctcctggat ggactgtatg
     1501 cacgaacccc ccgttcagtc cgactgctgc gccttatccg gtaactatca tcttgagtcc
     1561 aacccggaaa gacacgactt atcgccactg gcagcagcca ctggtaactg atttagagga
     1621 gttagtcttg aagttatgcg cctgttaagg ctaaactgaa agaacagatt tggttactgc
     1681 gctcctcgta agccagttac cacggttcaa agagttgctg ctctgagaac cttcgaaaaa
     1741 ccgccttgca gggcggtttt ttcgtttaca gagcaagaga ttacgacgcc acagaaagga
     1801 tctcaagaag atccttcacc gtaatggaaa tctatccaat ccgagcacat aggatacaca
     1861 tcgttataac gctggatctg cgtgaattcc agcagcagca agagaaagac tttctacaaa
     1921 ccagcttaca gcaggctaaa tttaaccaga aaaaagccgc tgaattactg ggtctgactt
     1981 atcatcagct acgtgccttg ctgaagaaac accagatcta atacgcattt gcaggtgtca
     2041 tactggcggg tttgacgcat aacgtcataa ggtttaccat ggcgtcatta ctgtataaaa
     2101 acacaggcat agatatgact ctggcattag ttggcgaaaa aattgacaga aatcgcttca
     2161 ccggtgagaa agttgaaaat agtacatttt ttaactgcga tttttcaggt gccgacctga
     2221 gcggcactga atttatcggc tgccagttct atgatcgcga aagtcagaaa gggtgcaatt
     2281 ttagtcgcgc aatgctgaaa gatgccattt tcaaaagctg tgatttatca atggcagatt
     2341 tccgcaacgt cagtgccttg ggcattgaaa ttcgccactg ccgcgcacaa ggcgcagatt
     2401 tccgcggtgc aagctttatg aatatgatca ccacgcgcac ctggttttgc agcgcatata
     2461 tcactaatac taatctaagc tacgccaatt tttcgaaagt cgtgttggaa aagtgtgagc
     2521 tgtgggaaaa ccgctggatg gggactcagg tactgggtgc gacgttcagt ggttcagatc
     2581 tctccggcgg cgagttttcg actttcgact ggcgagcagc aaacttcaca cattgcgatc
     2641 tgaccaattc ggagttaggt gacttagata ttcggggtgt tgatttacaa ggcgttaagt
     2701 tagacagcta ccaggcatcg ttgctcatgg agcggcttgg catcgctgtg attggttagt
     2761 tcagcgttta caccgggaga tgcgtttgac gatttacttt taaggggttc ctgtatctaa
     2821 ttttttgctg gacattcata cccgcgatca tcgcgtttat tgagtttatt atttatctat
     2881 gcgattccga tgaaaaattc gcacgaaaat atggctaact catagcaaaa aaaaagcccc
     2941 ctaagggctt ttttttgtac ctgacggtca gaccgattaa acataacat
//
