LOCUS       NZ_CP044966             1541 bp    DNA     circular CON 17-NOV-2023
DEFINITION  Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain
            PNCS014881 plasmid pPNCS014881.5, complete sequence.
ACCESSION   NZ_CP044966
VERSION     NZ_CP044966.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11333171
            Assembly: GCF_009017315.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:-
  ORGANISM  Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:-
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1541)
  AUTHORS   Schonfeld,J., Clark,C., Johnson,R., Labbe,G., Liu,K., Robertson,J.
            and Nash,J.H.E.
  TITLE     Complete genome sequences of Canadian Typhimurium and I
            1,4,[5],12:i:-
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1541)
  AUTHORS   Schonfeld,J., Clark,C., Johnson,R., Labbe,G., Liu,K., Robertson,J.
            and Nash,J.H.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-OCT-2019) Public Health Agency of Canada, National
            Microbiology Laboratory at Guelph, 110 Stone Road West, Guelph,
            Ontario N1G3W4, Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: APR-2019
            Assembly Method                   :: Unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/17/2023 03:18:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,086
            CDSs (total)                      :: 4,968
            Genes (coding)                    :: 4,840
            CDSs (with protein)               :: 4,840
            Genes (RNA)                       :: 118
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 128
            CDSs (without protein)            :: 128
            Pseudo Genes (ambiguous residues) :: 0 of 128
            Pseudo Genes (frameshifted)       :: 41 of 128
            Pseudo Genes (incomplete)         :: 101 of 128
            Pseudo Genes (internal stop)      :: 20 of 128
            Pseudo Genes (multiple problems)  :: 31 of 128
            Pseudo Genes (short protein)      :: 1 of 128
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP044966.1.
            Bacteria and source DNA available from 16-7746.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1541
                     /organism="Salmonella enterica subsp. enterica serovar
                     1,4,[5],12:i:-"
                     /mol_type="genomic DNA"
                     /strain="PNCS014881"
                     /serovar="1,4,[5],12:i:-"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:2583588"
                     /plasmid="pPNCS014881.5"
                     /geo_loc_name="Canada: BC"
                     /collection_date="2016-10-01"
                     /collected_by="BC Centre for Disease Control"
                     /note="I 1,4,[5],12:i:-"
     gene            1..444
                     /locus_tag="E5O18_RS25815"
     CDS             1..444
                     /locus_tag="E5O18_RS25815"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_192931344.1"
                     /translation="MKNTEGSCKLNELVSVAANNRLHRNIEEVENLNEPEEARLMAGFF
                     RSTRLQRNKQVQKRNLSAIAHQIYKKRTFTRPNSQKRTRNVFTRLNNYSRTRSADGFDG
                     STARTGQNGKLSHQKTVNGTRNFFAGREALAGCRGAALTRWQL"
                     /name="hypothetical protein"
     Typing          406..493
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.629"
                     /coverage="96.0"
                     /evalue="2.61e-33"
     Typing          complement(837..917)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.683"
                     /coverage="96.0"
                     /evalue="2.04e-24"
ORIGIN
        1 ttgaagaata cagaaggttc atgcaaactg aatgaactgg tttctgtcgc tgcgaacaac
       61 agactccaca ggaacattga ggaggtcgaa aacctcaatg aacccgaaga agctcgccta
      121 atggcgggct tttttcgttc tactcgcctt caacgaaaca agcaagtcca aaaacgcaat
      181 ttgagcgcga tagcacatca aatctacaaa aaacgcactt tcacccgacc aaacagccaa
      241 aaacgcacca gaaacgtttt tacgcgcctg aataactatt cacgcacacg atcggcggac
      301 ggtttcgacg gttcgacggc gcgaacgggt caaaacggca aactttctca tcagaaaacg
      361 gtgaacggga cgcggaattt tttcgcgggc cgtgaggcgt tggcggggtg tcggggcgca
      421 gccctgacca gatggcaatt gtgatagcgt cgcgtgtgac ggtattacaa ttgcacatcc
      481 tgtcccgatt ttttcgccag aacgctggca gagcatcggc agttctgcgc cgttaacccc
      541 tccacaggag cgcacagttt cccgacgaag gagagaaact actaagtgcg catccgcact
      601 taacgcgcgg atgatttttg gcaccgcagc caccacagct acgcaaaaat ttcggcgacc
      661 ggacagcaaa tcattttgcc gttttcgtga cgcagccgtt ccgcgcaatc gacaaactgg
      721 cagtacagaa aactcacgaa gtgcacgaag tgcgcactta tacaaacttc acttcgtttc
      781 gtttgtcgtg cggtctgcga cgcgcaaaaa aaccgagaaa cggcgggaat tttctggaca
      841 ggatgtgtaa ttgtaatacc gtcacacgcg acgctatcac aattaccacc tggtcagggc
      901 atccgccccg acaccccgca tcagtgcgta cgtgctcaat gtggtttccg gttcacttcc
      961 gcttcctcgc ccactcgctc actacgttcg gtcgctgggg ctgcggcgag cggagtgatc
     1021 tctctctcga tcctgtaggg atcttttttt tttttgcggt agagcagtct gtgattgcgg
     1081 tgcggcaggg ggctgtgcca tatgctggtt ggtgagcgtt ctgaggaacc ggcaaactcc
     1141 ccccccaccc cgcaaagggc gtaaaagggg gtaagagttt tgcccgagcg atatgctggc
     1201 cggagccgcg cccatcgtca ccggaacgga cctatggtag aacgtccgtt tgcatgttcc
     1261 cgcgtctacg ccgcgacatt tcgcccaaca tgctggcact ggtcccagaa ccgcgcccaa
     1321 gggcaaaaac ccaatataag cgcattacat tcaaccactt gtgccactcc ccaggcgtcc
     1381 gctcaaaaat gaagtatctt ccccggtagc ggaattctca cgcgtgcggt cgccgtcgtc
     1441 actgaccccc caaccgcaaa cggcctttgc aaacacgcaa caagtgcctg caaaaacagg
     1501 ttttttcggg attcctggga gactgtgcgg cgggaaaatt c
//
