LOCUS       NZ_CP044965             1888 bp    DNA     circular CON 17-NOV-2023
DEFINITION  Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain
            PNCS014881 plasmid pPNCS014881.4, complete sequence.
ACCESSION   NZ_CP044965
VERSION     NZ_CP044965.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11333171
            Assembly: GCF_009017315.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:-
  ORGANISM  Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:-
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1888)
  AUTHORS   Schonfeld,J., Clark,C., Johnson,R., Labbe,G., Liu,K., Robertson,J.
            and Nash,J.H.E.
  TITLE     Complete genome sequences of Canadian Typhimurium and I
            1,4,[5],12:i:-
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1888)
  AUTHORS   Schonfeld,J., Clark,C., Johnson,R., Labbe,G., Liu,K., Robertson,J.
            and Nash,J.H.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-OCT-2019) Public Health Agency of Canada, National
            Microbiology Laboratory at Guelph, 110 Stone Road West, Guelph,
            Ontario N1G3W4, Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: APR-2019
            Assembly Method                   :: Unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/17/2023 03:18:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,086
            CDSs (total)                      :: 4,968
            Genes (coding)                    :: 4,840
            CDSs (with protein)               :: 4,840
            Genes (RNA)                       :: 118
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 128
            CDSs (without protein)            :: 128
            Pseudo Genes (ambiguous residues) :: 0 of 128
            Pseudo Genes (frameshifted)       :: 41 of 128
            Pseudo Genes (incomplete)         :: 101 of 128
            Pseudo Genes (internal stop)      :: 20 of 128
            Pseudo Genes (multiple problems)  :: 31 of 128
            Pseudo Genes (short protein)      :: 1 of 128
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP044965.1.
            Bacteria and source DNA available from 16-7746.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1888
                     /organism="Salmonella enterica subsp. enterica serovar
                     1,4,[5],12:i:-"
                     /mol_type="genomic DNA"
                     /strain="PNCS014881"
                     /serovar="1,4,[5],12:i:-"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:2583588"
                     /plasmid="pPNCS014881.4"
                     /geo_loc_name="Canada: BC"
                     /collection_date="2016-10-01"
                     /collected_by="BC Centre for Disease Control"
                     /note="I 1,4,[5],12:i:-"
     gene            1..237
                     /locus_tag="E5O18_RS25680"
                     /old_locus_tag="E5O18_25680"
     CDS             1..237
                     /locus_tag="E5O18_RS25680"
                     /old_locus_tag="E5O18_25680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001676031.1"
                     /translation="MNRLTNLTPAEKKFLDDAIAAAERASGKKLNQPNRHIVLNRARAQ
                     IESQRYADRQRALREDERQQSEFAWSRPRAPRR"
                     /name="hypothetical protein"
     gene            complement(1079..1192)
                     /locus_tag="E5O18_RS26190"
                     /old_locus_tag="E5O18_25690"
     CDS             complement(1079..1192)
                     /locus_tag="E5O18_RS26190"
                     /old_locus_tag="E5O18_25690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001517211.1"
                     /translation="MHEPPVQSDCCACSGNYRLESNPERHAKAPLAAATGN"
                     /name="hypothetical protein"
     Typing          complement(1084..1567)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.277"
                     /coverage="80.0"
                     /evalue="0.0"
ORIGIN
        1 atgaacagac tgacaaacct gacacctgca gagaaaaaat ttcttgatga tgctattgcc
       61 gcagctgaga gagcgtcagg caaaaagcta aatcagccga accggcatat cgtcctgaac
      121 agagcgcgtg cgcagattga gtcgcagcgt tacgccgacc gccagcgtgc attacgtgag
      181 gatgagcggc agcagtccga gtttgcctgg tcacgtccgc gcgcgccgcg ccgctgattg
      241 cgccttttgg cggtttagtg gtgctgacac tccgaaatcg tctgccattc acccgcgtgc
      301 atagccatgc agtcgcgcag aaatcatcag gtgcgttttt cagggttatg gccagggaaa
      361 ggtgctggaa atggctaact cgttacagag tggcgctgag ggcctctcag gcggtgcggg
      421 caacggatgt tatggtaaat agagcgtttt ggtgactcgc ccgccacatc tttagctgtg
      481 atataatttt acagaaggat gaaagggcaa aaaaaaagaa tccgtaagga ttctttttct
      541 cgcctcagtc agcgactgcg aatcgctgac tgctacccga aaacatgtac cgaagctcac
      601 gttgtcgtta cttatcacaa agtaatttta cccctggggt gaatctacgt caattgagcc
      661 ggtattcctt tctatcaata tgaaggaata aacgtatggc cgaactgctt acggcgttta
      721 ttaaagcacc acttataagc caggtgctga ccatcattct gtgtctgatc tttgtagtac
      781 acagtctttt aaattgatgt accacccata aaaaaagcca cttatgtggc tttttttatg
      841 aatcgagaga taggtatctg ttgaatatca cagatgatct tcttgagatc cttttcgttg
      901 cgtcgtaatc tcttgctctg gaaacgaaaa aaaccgccca gcaaggcggt ttttcgaagg
      961 ttctcagagc agcaactctt tgaaccgcgg taactggctt aagaggagcg cagtaaccaa
     1021 atctgtcctt tcagtttagc cttaactggc acataacttc aagactaact cctctaaatc
     1081 agttaccagt ggctgctgcc agtggcgctt ttgcatgtct ttccgggttg gactcaagtc
     1141 gatagttacc ggaacaggcg cagcagtcgg actgaacggg gggttcgtgc atacagtcca
     1201 gcttggagcg aactgccttc ccggaactga gtgtcaggcg tggaatgaga gaccgcggcc
     1261 ataacagcgg aatgacaccg gtaaaccgaa aggcaggaac aggagagcgc acgagggagc
     1321 caccaggggg aaacgcctgg tatctttaag tcctgtcggg tttcgccacc actgatttga
     1381 gcgtcagatt tcgtgatgct tgtcaggggg gcggagccta tggaaaaacg gctttgccgc
     1441 ggccttatgg tttccctgtt aagtttcttc ctggcatcca ctaggaaatt tccgccccat
     1501 tagtaagcct gcaccgctcg ccgcagccga acgaccgagc ggagcgagtc agtgagcgag
     1561 gaagcggcat ttctccggca gtgcatcttc tgctgacgca tacgaatctc atttttcacc
     1621 tgctttatgt ggcagctatg cctgatgttt ctgcgatgtt acattttaag ccagtataca
     1681 ctccgctagc gctatgtgac tggttcaggg ctgcgccccg aaacccgcta aaaccactga
     1741 cgcgcctgcg gcttgcccaa cgtctcacgt caccggatta aaatccgctc ccgttcaccg
     1801 tttctggctg tctttcagca ccgccagcgc ttcatcggtt ctgctgtgtc tggcagactg
     1861 tgcggagtta ttctgacggg agaatgct
//
