LOCUS       NZ_CP044472             5770 bp    DNA     circular CON 09-JAN-2024
DEFINITION  Acinetobacter schindleri strain HZE23-1 plasmid pHZE23-1-9, complete
            sequence.
ACCESSION   NZ_CP044472
VERSION     NZ_CP044472.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12478518
            Assembly: GCF_010918635.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter schindleri
  ORGANISM  Acinetobacter schindleri
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 5770)
  AUTHORS   Cui,C., Chen,C., Sun,J. and Liu,Y.
  TITLE     Non-baumannii Acinetobacter spp. carrying blaNDM-1 isolated in China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5770)
  AUTHORS   Cui,C., Chen,C., Sun,J. and Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-SEP-2019) College of Veterinary Medicine, South China
            Agricultural University, 483 Wushan Street, Guangzhou 510642, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology             :: PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/09/2024 03:25:27
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,281
            CDSs (total)                      :: 3,169
            Genes (coding)                    :: 3,073
            CDSs (with protein)               :: 3,073
            Genes (RNA)                       :: 112
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 96
            CDSs (without protein)            :: 96
            Pseudo Genes (ambiguous residues) :: 0 of 96
            Pseudo Genes (frameshifted)       :: 28 of 96
            Pseudo Genes (incomplete)         :: 72 of 96
            Pseudo Genes (internal stop)      :: 23 of 96
            Pseudo Genes (multiple problems)  :: 23 of 96
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP044472.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5770
                     /organism="Acinetobacter schindleri"
                     /mol_type="genomic DNA"
                     /strain="HZE23-1"
                     /isolation_source="stool"
                     /host="goose"
                     /db_xref="taxon:108981"
                     /plasmid="pHZE23-1-9"
                     /geo_loc_name="China:Huizhou City, Guangdong Province"
                     /lat_lon="23.12 N 114.42 E"
                     /collection_date="2018-01-20"
                     /collected_by="chaoyuecui"
     gene            complement(729..1544)
                     /locus_tag="FSC10_RS16275"
                     /old_locus_tag="FSC10_16400"
     CDS             complement(729..1544)
                     /locus_tag="FSC10_RS16275"
                     /old_locus_tag="FSC10_16400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005253922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_163172893.1"
                     /translation="MLKQSSLERTEFKEEELAPIKKLDLNDLKVPMPKNLDQLLIWTSE
                     LAQYNYAQFLNQSEQLKLVDEDNLEEQAEISQKLRFYRGNALIENQIKDFYLKKLLDQG
                     EATVKGYIKSPTKKNTRYAVISYHDYDFVSFATPEILNKFPADLINFVQKETPKTLADI
                     YPEEAVFLSAIKKFIKPFKEQYKKLADKNREIKEHNTVAHKIYIKIKNKEATLQKPTEL
                     KPKESNPKTTENSAVPVEMKQGTIQKNMAPQEKPLTVIKKRKFALNKNK"
                     /name="hypothetical protein"
     gene            complement(1626..2126)
                     /locus_tag="FSC10_RS16280"
                     /old_locus_tag="FSC10_16405"
     CDS             complement(1626..2126)
                     /locus_tag="FSC10_RS16280"
                     /old_locus_tag="FSC10_16405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018680098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_163172895.1"
                     /translation="MTPDEKKLYALMAVAEQQQNLVNQAVKELQITKEHIQSTIAGQTH
                     HTISKAVNEGLQDGTAELIKTAKALGRLKNSIESASDQFSWKIITMILGIFSVFILTMT
                     WLFASYIKPLENIPKIESLRQQGIHFDIQSCAVGEESKPCVRVMKEQCGYGKHGDLCVI
                     DPK"
                     /name="hypothetical protein"
     gene            complement(2123..3052)
                     /locus_tag="FSC10_RS16285"
                     /old_locus_tag="FSC10_16410"
     CDS             complement(2123..3052)
                     /locus_tag="FSC10_RS16285"
                     /old_locus_tag="FSC10_16410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005249378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_100358227.1"
                     /translation="MAIARLSVKVGKAGKAAPHAEYIDRDEEKKKKEEQAKTDLEHRDY
                     GNMPKWAEHNPINFWQAADLYERKNGSTYREYEIALPREMNAEQRLELVEDFIQSEIGS
                     KYPYQFAIHNPKAMDGNDQPHVHLMFNERLQDGIERDPEQYFKRYNSKNPERGGAKKDN
                     TGKTYQERKTDIKDLRQRWADLCNSHLEKHQIDSRIDMRSYKEQGVEKEPEKKLLPSQA
                     KDPEIREALQQSRIAYKELEQLDLGDPKKDLKDLKNSPISDKEIKQGIESFKADFDSFK
                     QLALEQYKQQQKLEREQQKTMKFRGMSR"
                     /name="MobA/MobL family protein"
     gene            complement(3052..3207)
                     /locus_tag="FSC10_RS16410"
     CDS             complement(3052..3207)
                     /locus_tag="FSC10_RS16410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005098410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_169031083.1"
                     /translation="MQLKQVWGKIKDIIFGVIAAPLLILIMVLASIFDQRAFKKERNQK
                     KEQDKT"
                     /name="hypothetical protein"
     gene            3489..3896
                     /locus_tag="FSC10_RS16290"
                     /old_locus_tag="FSC10_16415"
     CDS             3489..3896
                     /locus_tag="FSC10_RS16290"
                     /old_locus_tag="FSC10_16415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005207259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="WP_087696036.1"
                     /translation="MNNDWLSEKITYISALKNPSDAQKLLLELAKIQYRTPDQEKKLNA
                     LIKAEKAIDRANKQKIAVKKLLNAEKEAERKARTRHLIQLGALFEIANLDKRDPAELLG
                     VLLKTAEIDPNDMKWQIWKDLGQETLNQRKN"
                     /name="conjugal transfer protein TraD"
     gene            4570..5091
                     /locus_tag="FSC10_RS16295"
                     /old_locus_tag="FSC10_16420"
     CDS             4570..5091
                     /locus_tag="FSC10_RS16295"
                     /old_locus_tag="FSC10_16420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007992540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_087696054.1"
                     /translation="MNDEFRTVTDISSSLNEFKKLISSNIFNQPDNPFFKSALIHLLIL
                     SRDLTQKSYIKGKTIDFTDDMVVTDKIKNVTFLIKHARDAVCHIDSQNHVLCKENNIMF
                     SFNVIFGKGTLAQIGDLTMTSDYDDDICIFFGDQKIYLVRHIIRAVKEAELYLKEYYKN
                     TEYSFFLSNC"
                     /name="hypothetical protein"
     gene            complement(5094..5390)
                     /locus_tag="FSC10_RS16300"
                     /old_locus_tag="FSC10_16425"
     CDS             complement(5094..5390)
                     /locus_tag="FSC10_RS16300"
                     /old_locus_tag="FSC10_16425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012987797.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antitoxin"
                     /protein_id="WP_213069658.1"
                     /translation="MMNNPAHAGELVSEWLDGLKEEGQAITITELAERIQVTRPLLSRI
                     INGKAPVTADVALRLHDALGISADLLMRVQSKYSLWMESQKQRPQIQPFFVNC"
                     /name="HigA family addiction module antitoxin"
     gene            complement(5401..5679)
                     /locus_tag="FSC10_RS16305"
                     /old_locus_tag="FSC10_16430"
     CDS             complement(5401..5679)
                     /locus_tag="FSC10_RS16305"
                     /old_locus_tag="FSC10_16430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006746770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="WP_087704769.1"
                     /translation="MIVDFNHKGLERFFKTSSTAGIQSVHSTKLKRQLTALNEAQSIDE
                     MNFPGWKLHPLKGKLKDHWSITVSANWRLTFIFKDGNAYIVDYQDYH"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     Typing          complement(2127..3052)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="94.175"
                     /coverage="100.0"
                     /evalue="1.77e-180"
ORIGIN
        1 aaaacaaatg tgctcactct ctcaactcgc ccccaaagcg tcgcacttcg tgctttggct
       61 ttggaaacgg ttgagagagt ttcggcaata ctcaccctaa gggcagccat ttgaaaaaat
      121 gacatatccc ctaagtattg ccgatttacc tgtatatatt tggcttcgga gccacgtata
      181 tcggtcgtat ccgcacatag ctttgctgac tatgcagaca aggactcaaa gtcttgcacc
      241 tcgctccacg cgctccctgt cgttacattg cctgtatctc tgcgagggtt tccccaacgt
      301 acaacttaac aagtcctatg taactactcc taacgctccg cctatgtgaa gttcccctgt
      361 aagcggttta gcctttcgac tatagctaca atacgccagt gacacttatt cctaccacac
      421 gtactgcatg ccgaccgtaa aacggacacg cagaagcggg caaagctcga tctaggatgc
      481 ttatttgatg gtttaaaaca cgaattaacg aagacttatc attttgaggc ttgatataaa
      541 cactgtttat tgtgaaaata gagttcaggt acaagccttt tggtgaaatc ataacggtcg
      601 ccaaacctta tgatcttcgt tacttgatgt tagttccatc aaataactgc gtaccgctga
      661 atttacttga aaacccctct aagttgcaag acttagaggg gtttttgttt agaattttac
      721 attacaagtt acttattctt gtttaaagca aattttcgct tcttaatcac agtaagtggc
      781 ttttcttgtg gagccatatt tttctgaatg gttccctgct tcatctctac tgggacagca
      841 ctattttcag tagtctttgg attagattct ttaggcttta actctgttgg cttttgcaga
      901 gttgcttcct tatttttaat ttttatataa attttatgag caactgtatt gtgctcctta
      961 atttccctgt tcttatcagc caatttttta tactgttcct taaaaggttt tataaatttt
     1021 ttgatagctg ataagaacac ggcttcttca ggatatatgt ccgctaatgt cttaggtgtt
     1081 tccttttgca cgaaattgat gagatcggct ggaaatttat taagaatctc tggagtagca
     1141 aagcttacaa aatcatagtc atgataagaa attacagcat atcgggtatt tttcttagtc
     1201 ggacttttaa tataaccttt aactgttgcc tccccttgat caagtaactt tttcaaatag
     1261 aaatctttga tttggttttc tataagcgca ttacctctat agaacctaag cttctgacta
     1321 atttccgcct gttcttccag gttgtcttca tcaacaagtt ttagctgttc ggattggtta
     1381 aggaattgag cataattata ttgagccagt tcggatgtcc aaatcagtaa ctgatcaagg
     1441 tttttaggca taggaacttt caaatcattc aaatcaagct ttttaatggg cgcaagttct
     1501 tcttccttaa actctgttct ttctaaactt gattgcttta acataataat ttccttaact
     1561 tccactaatt ttaaacataa taaaaattat aaatgagtgc ttagagcctt cattttcaga
     1621 ttcagctatt tggggtcaat aacgcataaa tccccatgct tcccatagcc acactgctct
     1681 ttcatcactc ggacgcaggg cttggactct tctccaacgg cacaactttg aatatcaaaa
     1741 tgaatacctt gctgccttaa actctcaatc tttggaatat tttctaaagg cttaatataa
     1801 gatgcaaata accatgtcat agtcagtatg aaaactgaaa aaattcctaa aatcattgtg
     1861 atgattttcc acgagaattg atcactggct gattcaatcg agtttttcaa gcgtccaagc
     1921 gctttagcgg tcttaataag ttctgctgta ccgtcctgta agccctcatt taccgctttt
     1981 gatatagtgt ggtgggtttg cccagcaata gtgctttgaa tgtgttcttt cgtgatttga
     2041 agctctttaa cggcctgatt gactaggttc tgctgttgtt ctgcaactgc catcagtgca
     2101 tatagctttt tttcatcagg tgtcatcggc tcatccctct aaacttcatt gttttctgtt
     2161 gctctctttc taatttctgc tgttgtttgt actgttccaa agcaagctgt ttaaagctgt
     2221 caaaatcagc cttaaagctc tcaataccct gtttaatttc tttgtctgaa attgggctgt
     2281 ttttgaggtc tttcaggtct tttttagggt cgcctaaatc tagttgctca agctctttat
     2341 aggctatacg tgactgttgc aaggcttccc tgatttcagg gtctttagct tggcttggta
     2401 atagtttctt ttcgggttct ttctctacgc cttgctcttt gtagcttcgc atatcaatac
     2461 ggctgtcaat ttggtgtttt tctaaatggc tgttgcataa atctgcccat ctttggcgta
     2521 ggtctttaat atcggttttt cgttcctggt aagtcttgcc tgtattgtct tttttagctc
     2581 cgccacgttc aggattcttg ctgttatagc gtttaaaata ttgctctgga tctcgctcga
     2641 ttccatcttg tagacgttca ttaaacatga ggtgaacgtg aggctgatcg ttgccgtcca
     2701 ttgctttagg gttatggatc gcaaactgat acggatattt tgagccaatt tcagactgaa
     2761 tgaagtcctc aaccagttct aggcgttgct cggcattcat ctctctaggc agggcaattt
     2821 catattctcg ataggtactg ccatttttgc gctcgtacag gtcggctgcc tgccaaaagt
     2881 taatcggatt atgttctgcc catttcggca tgtttccata gtcacgatgt tcaaggtcag
     2941 ttttagcctg ttcctctttt ttcttttttt cttcatcccg atctatatat tcggcatgcg
     3001 gtgctgcctt gcctgcctta ccaactttga cacttaaacg agcaatcgcc attaggtttt
     3061 atcctgttcc tttttttggt tgcgttcctt cttaaacgct ctttgatcga atatcgaagc
     3121 aagcaccata atgaggatga gtagcggtgc tgcgatcacg ccaaaaataa tatctttgat
     3181 ctttccccat acctgtttta gttgcatgtt gtcgctccta gcgttggtac ttcttttttt
     3241 cattcaattt tcaattgaac gaaaaaaaga agtttcaggg ttttagggat gaagtcccta
     3301 acgtgcttag gtttctcaat gaaattgaga aacgtctaag cgcgccatca aatttttgat
     3361 ggaagtacag gcgaacctct ctagaacgaa ctttaacaaa attgcggaca ttggacgtaa
     3421 ttattttgtt atcgttcttt gagaaaagag cctgtacttt tgcggtgcct gaattaatgg
     3481 aatcaaatat gaataatgat tggctatctg aaaaaatcac gtatatttct gctttaaaga
     3541 atccaagtga tgctcaaaaa cttttattgg aattagcaaa aatccaatat cgcacacccg
     3601 atcaagagaa aaaactgaat gccttgatta aagccgaaaa agctattgat cgagctaata
     3661 aacaaaagat tgcagttaaa aaattattga atgcagaaaa ggaagctgaa cgcaaagctc
     3721 gtacacgaca cctcatccaa ttaggcgcac tttttgaaat tgctaacctg gataaaagag
     3781 atccggctga gctacttggc gtcctgctta aaaccgctga aattgatcca aatgatatga
     3841 aatggcagat ttggaaagac ttagggcaag aaaccctgaa tcagcgtaaa aattaaaatt
     3901 gaaataataa acggctcaga agccttgcta ttataagcat atgagccttt tagaattgga
     3961 tcatgagaac atattaacat ccactagttt ttttttttaa gtgccatact cgatttactt
     4021 ttgaatgtaa tgtatccctt taatataaga agaaaaatac tcttacatag agacaaaacg
     4081 aagattagat cttttaatgg ggcgataaat tggcacatca tattaaccac gtattccatc
     4141 acacatatac ctctgaatag tttgataagt tctattctgc atgatttatc gaccaaacac
     4201 aaaaaatttt taaataacaa ggacttatta ataatatatt aacatagttg cactaatttc
     4261 attaaaaatc tttcatttga tcctacttat acgaaatgta aaattaggaa aaatttagct
     4321 cgaaaggtgt taaatcagcg taaaaagact gaaaaacaaa gtaattgatt atgcagttaa
     4381 gctacttaaa accgtggaac attgctcact tattgagcgt ggaacatgaa aaatcattaa
     4441 aaaagcccat tcgagggtaa atgggctttt gagtagtata taagagattg atttttaaag
     4501 gaataaaaaa agcatttcgt ataatctgca ttatgttaat tttagaaaat atttataaag
     4561 gatcatccaa tgaatgatga atttcgtaca gtaactgata tatcaagctc attgaatgag
     4621 tttaaaaaac ttatatctag caatatattt aaccaaccag ataatccatt ttttaagtct
     4681 gctttaattc atctacttat tctttctaga gatttaactc aaaaatcata tatcaaagga
     4741 aaaaccattg atttcacaga tgatatggtt gtaactgata aaatcaagaa tgtaaccttt
     4801 cttatcaaac atgcaagaga tgctgtttgc catattgatt ctcaaaacca tgttctatgt
     4861 aaagaaaata atattatgtt ttctttcaat gtcatatttg gaaaaggaac attagcacaa
     4921 ataggtgatt taactatgac ctcagactat gatgatgaca tttgtatatt ttttggtgat
     4981 caaaaaattt accttgttcg tcacattata agagcagtta aagaagctga actttactta
     5041 aaagaatatt ataagaatac agaatatagt tttttcttaa gtaactgtta aaactaacaa
     5101 ttaacaaaaa atggttgaat ctgtgggcgc tgtttttgtg attccatcca aagtgaatac
     5161 ttagattgga cacgcattaa caggtctgca ctgattccca aagcatcatg caagcgtaaa
     5221 gctacatctg ctgtcactgg cgctttaccg ttaataattc gagaaagtaa aggacgtgtc
     5281 acttgaatac gttcagcaag ttctgtaatg gtgatcgctt gtccttcttc ttttaagcca
     5341 tctaaccatt ctgacactaa ctcacctgca tgagctggat tattcatcat catattcacc
     5401 tcaatggtag tcctgatagt ccacgatata cgcattacca tctttaaaaa taaaagtcag
     5461 acgccaattg gcactcacag tgattgacca atgatccttt aatttacctt tcaaaggatg
     5521 aagcttccat ccaggaaaat tcatttcatc aatgctttgc gcttcattca aagcagttaa
     5581 ttgtcttttt aacttggttg aatgaacaga ctgaatacct gctgtagaac tggttttaaa
     5641 aaatcgttcc agtcccttat gattaaaatc tacaatcaca aaaaatcatc ctttgtatag
     5701 ttttaatata cagcaattcg ttcagtaaaa ctatacagaa atatagaatc aaataaaatc
     5761 aaaagcttta
//
