LOCUS       NZ_CP043668             4593 bp    DNA     circular CON 03-JAN-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Kentucky strain 162835
            plasmid unnamed1, complete sequence.
ACCESSION   NZ_CP043668
VERSION     NZ_CP043668.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12688792
            Assembly: GCF_009667835.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Kentucky
  ORGANISM  Salmonella enterica subsp. enterica serovar Kentucky
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4593)
  AUTHORS   Cohen,E., Davidovich,M., Rokney,A., Valinsky,L., Rahav,G. and
            Gal-Mor,O.
  TITLE     Emergence of new variants of antibiotic resistance genomic islands
            among multidrug-resistant Salmonella enterica in poultry
  JOURNAL   Environ Microbiol 22 (1), 413-432 (2020)
   PUBMED   31715658
REFERENCE   2  (bases 1 to 4593)
  AUTHORS   Cohen,E. and Gal-Mor,O.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-SEP-2019) The Infectious Diseases Research Laboratory,
            Sheba Medical Center, Tel Hashomer, Tel Hashomer 5262100, Israel
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.3
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 137.6349x
            Sequencing Technology :: Illumina & Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/03/2024 06:35:30
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,703
            CDSs (total)                      :: 4,582
            Genes (coding)                    :: 4,472
            CDSs (with protein)               :: 4,472
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 110
            CDSs (without protein)            :: 110
            Pseudo Genes (ambiguous residues) :: 0 of 110
            Pseudo Genes (frameshifted)       :: 37 of 110
            Pseudo Genes (incomplete)         :: 80 of 110
            Pseudo Genes (internal stop)      :: 21 of 110
            Pseudo Genes (multiple problems)  :: 26 of 110
            Pseudo Genes (short protein)      :: 1 of 110
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP043668.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4593
                     /organism="Salmonella enterica subsp. enterica serovar
                     Kentucky"
                     /mol_type="genomic DNA"
                     /strain="162835"
                     /serovar="Kentucky"
                     /isolation_source="animal"
                     /sub_species="enterica"
                     /db_xref="taxon:192955"
                     /plasmid="unnamed1"
                     /geo_loc_name="Israel"
                     /lat_lon="31.0461 N 34.8516 E"
                     /collection_date="2015-10-27"
     gene            complement(396..587)
                     /locus_tag="F1B87_RS23415"
                     /old_locus_tag="F1B87_23715"
     CDS             complement(396..587)
                     /locus_tag="F1B87_RS23415"
                     /old_locus_tag="F1B87_23715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165986.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            650..973
                     /locus_tag="F1B87_RS23420"
                     /old_locus_tag="F1B87_23720"
     CDS             650..973
                     /locus_tag="F1B87_RS23420"
                     /old_locus_tag="F1B87_23720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001677263.1"
                     /translation="MLTIRVSDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGHWSSIDRVHVVAALMAIEGELRQLRQAVREQGGR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1182..>1616
                     /locus_tag="F1B87_RS23820"
                     /old_locus_tag="F1B87_23725"
                     /pseudo=""
     CDS             1182..>1616
                     /locus_tag="F1B87_RS23820"
                     /old_locus_tag="F1B87_23725"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1651..2211
                     /locus_tag="F1B87_RS23430"
                     /old_locus_tag="F1B87_23730"
     CDS             1651..2211
                     /locus_tag="F1B87_RS23430"
                     /old_locus_tag="F1B87_23730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_000067488.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKQQLDTLSTTVSTQLSTTEAELSRQQKNLLWQVIKGRVLFPALTA
                     LSVTGGIFLGCWGLIQWQESRIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     gene            2218..2451
                     /locus_tag="F1B87_RS23435"
                     /old_locus_tag="F1B87_23735"
     CDS             2218..2451
                     /locus_tag="F1B87_RS23435"
                     /old_locus_tag="F1B87_23735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137388.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHAVTQQNNA
                     ILNERVVNLSQQVQLLAGQVDRLSRLFITNNR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(3139..3978)
                     /locus_tag="F1B87_RS23440"
                     /old_locus_tag="F1B87_23745"
     CDS             complement(3139..3978)
                     /locus_tag="F1B87_RS23440"
                     /old_locus_tag="F1B87_23745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001354646.1"
                     /translation="MLTLFIFFVLLIAACFFCFAPPRRGYDRNEIIPYKIKLSINKYRL
                     YIYSSGKVRQYLLFLVILSLYYSIAEPFKSELIKNISYSLMAAFIFDTGLNFSKENITK
                     GVISTRWHNDLYSSFERMKAINKIYYPSNKEINTEGLSKAITSSLFNDDANSFAKRDFR
                     LMWDLSSEKYLSYKEIIIRKGDKLDAVCLRFINDDYKFLVNFNRDEEVFKYFPSIMQPS
                     LKTYRALSRLVNSIKDPSRFKFTTESLEMELLEYLELRNELFNDIEEVMGSYAQRAP"
                     /name="hypothetical protein"
     gene            complement(4170..4319)
                     /locus_tag="F1B87_RS23885"
     CDS             complement(4170..4319)
                     /locus_tag="F1B87_RS23885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001326446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032194431.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPERHVKTPLAAAIGNRLEELVLK
                     LCAG"
                     /name="hypothetical protein"
     Typing          224..308
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.03e-37"
     Typing          complement(2..213)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.72"
                     /coverage="100.0"
                     /evalue="1.22e-69"
     Typing          3978..4429
                     /name="ColRNAI_rep_cluster_1857"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="83.0"
                     /evalue="0.0"
     Typing          964..2549
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttcctgttcc tggccttttg ctcacatgtt tcttttggcg ttatcccctg attctgtgga
       61 taaccgcatc accgtctttg agtgagctga taccgctcgc cgcagccgaa cgaccgagcg
      121 tagcgagtca gtgagcgagg aagcggaaga gcgcctgatg cggcattttc tccttacgca
      181 tctgtgcggt atttcacacc gcatatggtg cacttttctt ataatccgca ctgatgccac
      241 atagttaagc cagtatacac tccgctatcg ctacgtgact gggtcagggc tgcgccccga
      301 cacccgctaa aacccgctga cgcgccctga cgggcttgtc tgctcccggc atccgctcac
      361 aggcaagctg tgaacgtctc cgggagctgc atgtttcagt tgctttcacc gtcatcgccg
      421 aagcgtgcga ggcaactacg gtagagttcg tcggcgtggt cgtgaagtga ttcgcagatg
      481 tctgcctgtt cgtccgcgtc cagctcgttg agtttttcca gcagggtcag cgtctggctt
      541 ctgataaagc gggccatgtt aagggctgtt ttttcctgtt tggtcatggt cttaaggctc
      601 cttaataggg gattttttag ggggaatgat accgatgaaa cgcgagaaga tgctcacgat
      661 acgggttagc gatgaggagc acgcccggtt actggaacgc tgcgagggta aacgactggc
      721 agaatggatg cggcgggtct gtctggggga gccggttgcg cgcacaggaa aactgccgac
      781 actatcgccg ccattgctgc ggcatctggc tgccatcggg aacaatctga accagacagc
      841 ccggaaggtg aacagcggcc actggtcttc gattgaccgg gttcatgtgg tggccgctct
      901 gatggccatc gagggtgaat tgcgccagtt gcggcaggct gtcagggaac aggggggacg
      961 ggatgatagt taaatttcat gccaggggga aaggcggtgg aagtggcccg gtcgattacc
     1021 tgctggggcg ggagcgtaac cgcgaaggcg caacggtgct ccggggtaac ccggaagaaa
     1081 tccgggaact cattgatgcc acgccatttt cgaagaaata cacgtcaggc gttctgtcgt
     1141 tcgcggagaa ggagttaccg ccgggtgaac gcgaaagagt gatgacgagc tttgagcgtg
     1201 ttcttatgcc cggtctcgaa aaagaccagt acagcattct ctgggtggaa caccaggata
     1261 aggggcggct cgaactgaat tttgtcattc cgaacatgga actacagagc ggtaagcgcc
     1321 tccagccgta ctacgaccgt gcggacaggc cgaggataaa tgcctggcag acgctggtta
     1381 atcatcatta cgggctgcgt gacccgaacg caccggagaa cagacggacg cttgtcacac
     1441 cgaataatct gccaaaagcg aaacaggagg ccgcagaagc gattacacgg ggtcttgagg
     1501 cgctttaccg tgccggagca ataaaaacgc gtcaggatgt cactgaggcg ctcacagcgg
     1561 caggttttga ggtggtgagg acaaccagaa gcagtatcag tattgccgac ccggaggggg
     1621 ggcggaatct caggctaaag ggggcgctgt atgagcaatc ttttacaaat gggaacggac
     1681 ttcgagaaga aactgaaaga gcgagccgct tctaccgaga acatgctgaa cagcgagttc
     1741 aggaagctag aagagtctgt agacaaggca ctgagcttaa acaggcagaa aatcagagac
     1801 gctatcagcg aacatacaac atccgtgaaa cagcaactgg atacgctgag caccaccgtg
     1861 agcacgcagc tcagcaccac agaggccgaa ctgtcccggc agcagaaaaa cctgctctgg
     1921 caggtgatca aagggcgggt actgtttccg gcgctgaccg cgctcagcgt cacgggcggc
     1981 attttcctgg ggtgctgggg gctgattcag tggcaggaaa gcaggattgc gaaaaatatc
     2041 ttgaccatca gagagcagga aaacacgctg gcgaaactcg aggcaaaaac ctggggggtg
     2101 acgttcgtca atggcgagaa cgggaaattt ctggtgctgc cggacggggt gaaaggggaa
     2161 aacacctgga cggtgggcga caagaacgcc gtgaggctgg tcagggagta aacgagtatg
     2221 acggaactgg aagggcattt gctgaacgcc ttagagcatt tgcaacagga ctatatgcgg
     2281 cggctgaacg agtgggagag cgccttcgca gaattgcaga agatgcacgc ggttacgcaa
     2341 cagaacaacg cgatactgaa cgagcgtgtc gtgaacttga gtcagcaggt gcagctatta
     2401 gccggacaag tcgaccgctt gagtcggtta tttatcacga acaacagata agggatgaac
     2461 aggagcgtca ggcgcaggag cttgcccggc gctggcatga agagcaggaa cccgaagcgc
     2521 ggatctggcg tggcccgtca atggggatgt gaccggggta ccccctgaaa tcgagccagt
     2581 ttgtggcacg ccctacccgg atggcgccaa tgttaatgta cgtacattag cattaacaat
     2641 atccaaacct ccccattttg ccccgttcga cggctggaac gtgcgaaact gatcgtcatt
     2701 cagtttcgcg cataactatg catgaggtta aaatttacca ggcgcgatcg cggcagtttt
     2761 tcgggtggtt tgttgctgtt tttacctgtc tgctgccgtg atcgcgctga acgcgtttaa
     2821 gcggtacgcg caatgcgacg ttatggtaaa tacggagtat tttaattgcg ggcctttgtt
     2881 gtatatctct gtcgtttgtc cccgggggga agcattactg ctaacaagtc ccgtgagaaa
     2941 actgcgcaat cgtattgcgc accatgaacc tattctcaac cgcaatctgg aggatgattt
     3001 tgctacgata aagagaatta tcgcgtatcg gtgtcagcat tcattggagt ggatgctgaa
     3061 aaaccaggtg ttactccctc tacttacact taaacctctc taaaaatata agtaagtact
     3121 atcgagggct atcatgaact atggtgccct ctgagcatag ctacccatta cttcttctat
     3181 gtcattgaat aattcatttc ttaactctaa gtattctagt aactccattt ctaatgactc
     3241 tgtcgtgaac ttaaatctag aaggatcttt gattgagttt actagtcttg ataacgctct
     3301 atatgttttg agtgaaggtt gcattataga tggaaagtat ttgaaaacct cttcatctct
     3361 gttgaaatta actaaaaact tgtagtcatc atttataaat ctcaagcata cagcgtcaag
     3421 cttatcgcct tttcttatta ttatttcttt ataggaaaga tatttttcag aagataagtc
     3481 ccacatcaag cgaaaatctc tctttgcgaa cgagttcgcg tcatcattga aaagagatga
     3541 tgtgatggct ttggatagac cttctgtgtt tatctctttg ttggatgggt agtaaatttt
     3601 attaattgct ttcattctct caaatgatga atataggtca ttatgccacc ttgttgaaat
     3661 cactccttta gttatattct ccttgctaaa attaagccct gtatcaaaaa taaatgcagc
     3721 catcagtgaa tatgatatgt tttttattaa ctcagactta aatggttccg ctatggagta
     3781 gtacagtgat aaaataacta aaaataaaag gtattgtctt acctttcccg atgagtatat
     3841 gtaaaggcga tatttattta ttgatagttt tattttgtat ggaatgatct catttctgtc
     3901 atatcctctt cgtggtggag caaaacaaaa gaaacatgca gctattaata aaacaaaaaa
     3961 gatgaacagt gtaagcaagt tcggctcctg tgtatgctca ctatgcatga ttgtcttgag
     4021 atctaacgat cctgaaggta gtcttgtccg taaacgaaaa aaccgcccag caaggcggct
     4081 tttcgaaggt tctcagagca gcaactcttt gaaccaaggt aactggcttg gaggagcaca
     4141 gccaccaaat ctgtcctttc agtttagcct taaccggcgc ataacttcaa gactaactcc
     4201 tctaaacggt taccaatggc tgctgccagt ggcgttttta cgtgtctttc cgggttggac
     4261 tcaagacgat agttaccgga taaggcgcag cggtcgggct gaacgggggg ttcgtgcaca
     4321 cagcccagct tggagcgaac gacctacacc gggccgagat accaacagcg tgagctatga
     4381 gaaagcgcca cgcttcccga agggagaaag gcggacaggt atccggtaag cggcagggtc
     4441 ggaacaggag agcgcacgag ggagcttcca gggggaaacg cctggtatct ttatagtcct
     4501 gtcgggtttc gccacctctg acttgagcat ctgtttttgt gatgctcgtc aggggggcgg
     4561 agcctatgga aaaacgccag cggcgcggcc ttc
//
